Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > BY3332

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
493823
BigY2
493823
5043106-G-A 5175065-G-A A+
56827238-A-G A*
24344097-T-G 22197950-T-G P3_t1 A*A*
13450227-C-G 11294551-C-G A*
25968043-A-G 23821896-A-G P1_Y1 A*A*
19807078-T-G 17695198-T-G P5_Prx A*
13448310-C-A 11292634-C-A A*
19820516-C-T 17708636-C-T P5_Prx A*
28816660-A-G 26670513-A-G A*
13448201-A-G 11292525-A-G A*
19796599-A-C 17684719-A-C P5_Prx A*A*
26317852-C-T 24171705-C-T P1_Y1 A*
8360384-C-G 8492343-C-G BY71985 YY++
17342544-C-A 15230664-C-A BY114009 YY++
6869659-CA-C 7001618-CA-C 10×A***+
8377184-T-C 8509143-T-C BY72123 YY++
8361750-G-C 8493709-G-C BY71996 YY++
28805421-T-C 26659274-T-C BY151816 ++
14243285-A-C 12122579-A-C BY94250 YY++
14430109-GAGT-G 12309382-GAGT-G ++
8362689-T-A 8494648-T-A BY72003 YY++
21200706-C-T 19038820-C-T BY131050 YY++
8364268-G-C 8496227-G-C BY72020 YY++
8366092-G-T 8498051-G-T BY72039 YY++
6857607-A-G 6989566-A-G BY61760 YY++
8716511-A-G 8848470-A-G BY75398 YY++
24482782-C-T 22336635-C-T BY150291 ++
16447379-T-C 14335499-T-C BY107865 YY++
9959084-T-C 10121475-T-C Y+**
9927718-G-T 10090109-G-T BY82020 Y++
16802198-T-C 14690318-T-C BY110265 YY++
9865455-G-A 10027846-G-A BY81585 YY++
23632781-T-C 21470895-T-C BY146885 YY++
25520769-T-C 23374622-T-C P1_gr1 +*
22287411-C-G 20125525-C-G BY216129 DYZ19 ***+
15494644-C-A 13382764-C-A BY101976 YY++
16965490-G-T 14853610-G-T BY111467 YY++
6881066-C-T 7013025-C-T BZ1081 YY++
16967981-G-A 14856101-G-A BY111497 YY**+
15365392-G-A 13253512-G-A BY101148 YY++
17421775-T-C 15309895-T-C BY114675 YY++
17090579-C-T 14978699-C-T BY112224 YY++
17361835-A-C 15249955-A-C BY114180 YY++
13881287-C-T 11760581-C-T FT93924 Y+**
17708363-A-G 15596483-A-G BY116828 YY++
13312441-G-A 11156765-G-A +**
8482874-G-C 8614833-G-C L643BY4071 YY++
18668359-A-G 16556479-A-G BY122977 YY++
7664486-CT-C 7796445-CT-C +
18690073-TTA-T 16578193-TTA-T **+
6745758-A-T 6877717-A-T BY61055 YY++
21475590-G-A 19313704-G-A FT94117 Y+
18885202-A-T 16773322-A-T BY124498 YY++
7082658-T-C 7214617-T-C FT93869 YY+**
6632147-C-G 6764106-C-G BY60424 YY++
19157744-C-T 17045864-C-T BY156834 YY++
19283267-G-T 17171387-G-T BY127941 YY++
19444723-G-A 17332843-G-A FT94103 YY+**
17880119-C-T 15768239-C-T BY118056 YY++
18263411-G-A 16151531-G-A FT94071 +**
4168124-T-C 4300083-T-C FT93638 +
4007612-C-T 4139571-C-T FT93615 +
16611392-G-T 14499512-G-T BY108987 YY++
7185179-A-T 7317138-A-T FT93874 Y+
6427601-C-A 6559560-C-A FT93843 +**
6433108-C-T 6565067-C-T FT93844 +
13650519-G-A 11494843-G-A BY87050 ++
5373385-T-A 5505344-T-A FT93762 +
13669191-G-T 11513515-G-T BY87735 ++
7324876-G-A 7456835-G-A BY64568 YY++
6395790-A-AT 6527749-A-AT 8×T++
13457242-A-AATTCC 11301566-A-AATTCC 5×ATTCC*
16729242-C-A 14617362-C-A **
17884578-C-A 15772698-C-A **
17950821-TTC-T 15838941-TTC-T **
17092644-T-C 14980764-T-C **
18565740-C-A 16453860-C-A **
16842684-C-A 14730804-C-A **
16847685-C-A 14735805-C-A **
18540176-G-T 16428296-G-T **
17994872-A-AC 15882992-A-AC P7_Prx **
18439254-GGTTTT-G 16327374-GGTTTT-G P6_Dst **
17126551-G-T 15014671-G-T **
16726243-C-A 14614363-C-A **
13453385-G-A 11297709-G-A **
16706027-T-G 14594147-T-G **
11037412-C-A **
13894523-C-A 11773817-C-A **
13855277-G-C 11734571-G-C **
11651870-T-A **
11650724-A-C **
11650698-A-C **
13722628-G-T 11566952-G-T **
13480870-C-G 11325194-C-G **
13458834-G-GCCATT 11303158-G-GCCATT 4×CCATT*****
13272801-C-A 11117125-C-A **
11035287-C-A **
14119357-C-A 11998651-C-A **
11031756-G-T **
11026709-T-G **
11025633-G-T **
11022857-TATTCCATTCCATTCTTTTCCATTCC-T **
11010083-C-A **
11009471-C-A **
2915006-TCTTCCTTC-T 3046965-TCTTCCTTC-T 10×CTTC*****
10989403-TTCGAC-T **
10985483-T-A **
10985475-C-A **
13929167-C-A 11808461-C-A **
14240491-C-A 12119785-C-A **
16498120-C-A 14386240-C-A **
15221354-G-A 13109440-G-A **
16430078-T-C 14318198-T-C **
16290796-T-C 14178916-T-C **
16179690-A-C 14067810-A-C **
16118579-T-TG 14006699-T-TG P8_Prx **
16054864-C-A 13942984-C-A **
16030071-C-A 13918191-C-A **
15763384-A-G 13651504-A-G **
15450080-T-A 13338200-T-A **
15394282-C-A 13282402-C-A **
15127975-A-C 13016062-A-C **
14328047-C-A 12207341-C-A **
14931709-A-C 12819774-A-C **
14931703-A-C 12819768-A-C **
14931696-T-A 12819761-T-A **
14835365-C-A 12723432-C-A **
14552288-G-T 12440489-G-T **
14527006-C-A 12415207-C-A **
14526714-A-C 12414915-A-C **
14508320-G-T 12396525-G-T **
14387781-G-A 12267077-G-A **
14380104-C-A 12259400-C-A **
15450064-T-G 13338184-T-G **
19793272-A-T 17681392-A-T P5_Prx **
18818873-C-A 16706993-C-A **
28791347-G-C 26645200-G-C **
3210-A-C **
56869631-T-G **
56846136-G-C **
56845838-C-A **
56843158-A-C **
56841208-C-T **
56841180-C-A **
56840148-G-T **
56742388-C-A **
28734849-C-A 26588702-C-A **
13453388-T-A 11297712-T-A **
28710728-G-T 26564581-G-T **
28695115-G-T 26548968-G-T **
28670360-C-A 26524213-C-A **
28664573-G-T 26518426-G-T FT122993 **
28555527-A-C 26409380-A-C **
28549497-G-C 26403350-G-C **
28549494-A-C 26403347-A-C **
28508693-G-T 26362546-G-T **
27714456-G-T 25568309-G-T P1_Y2 **
23475598-C-T 21313712-C-T **
13455909-C-T 11300233-C-T **
26465385-AG-A 24319238-AG-A P1_Y1 **
14724709-G-T 12612777-G-T **
26018401-G-GT 23872254-G-GT P1_Y1 **
22788829-T-C 20626943-T-C **
22423576-C-A 20261690-C-A DYZ19 **
21746890-C-T 19585004-C-T **
21746881-G-T 19584995-G-T **
19950184-G-GT 17838304-G-GT P5_Prx **
16214441-C-T 14102561-C-T **
15141737-T-A 13029824-T-A **
15103207-C-A 12991295-C-A **
14135551-C-A 12014845-C-A **
13453502-T-C 11297826-T-C **
13431030-T-G 11275354-T-G **
13315113-C-A 11159437-C-A **
9887346-A-G 10049737-A-G **
7344468-A-G 7476427-A-G **
7276774-T-C 7408733-T-C **
7123469-G-A 7255428-G-A **
5677965-A-AT 5809924-A-AT **
5115115-C-T 5247074-C-T **
4853216-T-C 4985175-T-C **
27579156-A-T 25433009-A-T P1_Y2 **
26059770-A-G 23913623-A-G P1_Y1 **
18847699-C-A 16735819-C-A **
20659340-G-T 18497454-G-T P4_Prx **
22218862-T-C 20056976-T-C DYZ19 **
21852575-C-A 19690689-C-A **
21802866-C-A 19640980-C-A **
21526818-C-A 19364932-C-A **
21455844-C-G 19293958-C-G **
20815597-C-A 18653711-C-A P4_Gap **
20757256-A-C 18595370-A-C P4_Prx **
20709604-G-T 18547718-G-T P4_Prx **
20709590-G-T 18547704-G-T P4_Prx **
20629073-T-G 18467187-T-G P4_Prx **
22325162-T-G 20163276-T-G DYZ19 **
20333872-C-A 18171986-C-A P5_Dst **
19866888-C-A 17755008-C-A P5_Prx **
19793289-A-T 17681409-A-T P5_Prx **
10983693-C-A **
19674826-A-C 17562946-A-C P5_Prx **
19674825-C-A 17562945-C-A P5_Prx **
19674790-A-C 17562910-A-C P5_Prx **
19244874-C-A 17132994-C-A **
19146582-T-G 17034702-T-G **
22236920-A-C 20075034-A-C BY213702 DYZ19 **
22360165-T-C 20198279-T-C DYZ19 **
25937327-T-C 23791180-T-C P1_Y1 **
22537356-T-A 20375470-T-A **
25530325-C-A 23384178-C-A P1_gr1 **
24302782-A-C 22156635-A-C P3_t1 **
23848607-G-T 21686721-G-T **
23442506-C-A 21280620-C-A **
23317800-A-T 21155914-A-T ****
23261575-C-A 21099689-C-A **
23087564-C-A 20925678-C-A **
23062646-A-T 20900760-A-T **
22633945-C-A 20472059-C-A **
22483996-T-G 20322110-T-G DYZ19 **
22435723-T-G 20273837-T-G DYZ19 **
22466292-A-T 20304406-A-T SUR16 DYZ19 **
22466069-T-C 20304183-T-C BY221656 DYZ19 **
22443598-A-T 20281712-A-T DYZ19 ****
22435799-TC-T 20273913-TC-T DYZ19 **
22435797-G-T 20273911-G-T DYZ19 **
22435763-T-A 20273877-T-A DYZ19 **
22435746-AAG-A 20273860-AAG-A DYZ19 **
22435734-A-G 20273848-A-G DYZ19 **
22435728-A-T 20273842-A-T DYZ19 **
10983954-CCAT-C **
11005171-C-A **
10977336-C-A **
3277941-C-A 3409900-C-A **
3961522-C-A 4093481-C-A **
3805595-G-T 3937554-G-T **
3753860-C-A 3885819-C-A **
3748087-CA-C 3880046-CA-C **
3658578-G-A 3790537-G-A **
3568490-C-A 3700449-C-A **
3549251-G-T 3681210-G-T **
3512653-C-A 3644612-C-A **
3506635-G-T 3638594-G-T **
3448364-C-A 3580323-C-A **
3267224-C-A 3399183-C-A **
4086637-G-A 4218596-G-A **
3224393-C-A 3356352-C-A **
3111620-T-C 3243579-T-C **
2771496-C-A 2903455-C-A **
2669938-T-C 2801897-T-C **
9377881-A-C 9540272-A-C **
5022341-C-A 5154300-C-A **
16598822-C-CA 14486942-C-CA 8×A**
10693103-C-A **
22363462-C-A 20201576-C-A DYZ19 **
10782956-C-A **
13485691-G-T 11330015-G-T **
4086343-T-G 4218302-T-G **
4357925-G-T 4489884-G-T **
11031785-G-T **
5446317-C-A 5578276-C-A **
6010501-C-A 6142460-C-A **
5956908-T-A 6088867-T-A **
5956887-T-G 6088846-T-G **
5944663-TAG-T 6076622-TAG-T **
5936575-T-G 6068534-T-G **
5907875-G-T 6039834-G-T **
5775552-A-C 5907511-A-C **
5635195-C-A 5767154-C-A **
5623151-C-A 5755110-C-A **
5603805-A-T 5735764-A-T **
5123254-C-A 5255213-C-A **
4370895-C-A 4502854-C-A **
5022262-A-G 5154221-A-G **
4891995-G-T 5023954-G-T **
4871874-A-C 5003833-A-C **
4855007-C-A 4986966-C-A **
4752316-A-T 4884275-A-T **
4700324-A-C 4832283-A-C **
4480012-G-T 4611971-G-T **
4479962-T-C 4611921-T-C **
4447329-C-A 4579288-C-A **
4416701-C-A 4548660-C-A **
4401004-G-T 4532963-G-T **
4201617-C-A 4333576-C-A **
28497063-C-A 26350916-C-A **
6191208-C-T 6323167-C-T IR3_Dst **
23052555-TG-T 20890669-TG-T **
10821643-A-G **
13860849-A-G 11740143-A-G **
23380978-C-A 21219092-C-A **
26099764-C-A 23953617-C-A P1_Y1 **
10785250-T-C **
13940543-C-A 11819837-C-A **
56677982-T-A **
18053543-C-A 15941663-C-A **
10985002-G-T **
9088961-C-A 9251352-C-A **
10947030-C-A **
10950449-T-G **
10968660-A-T **
23475599-A-G 21313713-A-G **
11020136-C-T **
11020115-C-G **
10831592-A-T **
13973180-C-A 11852474-C-A **
17210889-C-A 15099009-C-A **
13298190-C-A 11142514-C-A **
17323424-T-A 15211544-T-A **
7008308-T-C 7140267-T-C **
58848499-G-A 56742372-C-T **
19950187-TG-T 17838307-TG-T P5_Prx **
10866975-C-T **
10785375-G-T **
10831587-C-T **
10024256-C-A 10186647-C-A **
21785988-C-A 19624102-C-A FT31298 **
17916541-C-A 15804661-C-A **
28761235-T-G 26615088-T-G **
25931647-G-T 23785500-G-T P1_Y1 **
10877974-C-A **
6512065-C-A 6644024-C-A **
13453468-C-CAGTTA 11297792-C-CAGTTA **
10831603-C-T **
10831600-C-T **
13625176-C-A 11469500-C-A **
10866982-C-G **
10820619-C-A **
10800522-T-C **
5873658-C-A 6005617-C-A **
23475595-C-T 21313709-C-T **
14357784-C-A 12237079-C-A **
9994876-C-A 10157267-C-A **
56838780-T-G **
5224926-CAAAA-C 5356885-CAAAA-C 19×A**
10791288-C-G **
15221361-G-A 13109447-G-A **
13884318-C-A 11763612-C-A **
6071219-C-A 6203178-C-A **
28572324-T-A 26426177-T-A **
6267738-G-T 6399697-G-T IR3_Dst **
10798686-C-A **
10847093-C-A **
10844635-CTCCAT-C **
10839826-C-A **
10812016-C-G **
10811241-C-A **
10807584-C-A **
10804655-T-G **
10802352-C-A **
10800511-A-T **
10791269-T-TCCACTCGACC **
10864780-T-C **
10785269-A-C **
10785240-T-TCTCACTCCAC **
10785200-T-C **
10785195-C-T FT73135 **
10777923-T-G **
10762538-A-T **
10761859-C-A **
10756676-T-C **
10752650-T-C **
10747010-T-G **
10856088-C-A **
10884693-C-A **
10664218-C-T **
10939652-C-G **
10963253-C-T **
10963247-C-G **
10963245-C-T **
10963216-A-C **
10963215-T-C **
10963011-T-C **
10960140-G-T **
10944397-T-G **
10944394-C-G **
10939654-T-G **
10939621-C-G **
10890279-T-A **
10939608-A-T **
10933724-A-T **
10929536-T-C **
10929352-C-A **
10921488-T-G **
10921145-C-CCACTCCACCA **
10921109-T-G **
10912312-C-T **
10906833-C-A **
10902096-C-A **
10666080-C-A **
10800515-C-G **
10664216-C-T **
7254900-C-A 7386859-C-A **
8078771-C-A 8210730-C-A **
6664723-G-T 6796682-G-T **
7860296-C-A 7992255-C-A **
6490769-T-C 6622728-T-C **
6507274-G-T 6639233-G-T **
7414105-C-A 7546064-C-A **
6507401-G-T 6639360-G-T **
6536316-G-T 6668275-G-T **
7372638-C-A 7504597-C-A **
7154765-C-A 7286724-C-A **
8166934-C-A 8298893-C-A **
6599640-T-A 6731599-T-A **
10660872-A-T **
7128098-C-A 7260057-C-A **
7033417-C-A 7165376-C-A **
6917140-C-A 7049099-C-A **
6799121-C-A 6931080-C-A **
6773931-G-T 6905890-G-T **
6732571-C-A 6864530-C-A **
6709100-T-G 6841059-T-G **
8111299-G-T 8243258-G-T **
8076880-C-A 8208839-C-A **
6690277-C-A 6822236-C-A **
9131149-C-A 9293540-C-A **
10656327-T-C **
10656294-A-G **
10645906-C-A **
6403679-C-A 6535638-C-A **
6458431-C-A 6590390-C-A **
10628544-ATCCACTCCCCTCAAC-A **
10628527-CACTCAACTAA-C **
10628519-C-T **
10024175-G-T 10186566-G-T **
9923281-C-T 10085672-C-T **
10628522-A-C **
9112738-G-T **
8698830-C-A 8830789-C-A **
9111315-A-T **
8816845-A-C 8948804-A-C **
8786818-A-C 8918777-A-C **
8379488-C-A 8511447-C-A **
15658221-A-G 13546341-A-G ***
21104437-TAAA-T,TAA 18942551-TAAA-T,TAA 22×A***
16503712-A-G 14391832-A-G ***
22466296-C-G 20304410-C-G SUR17 DYZ19 ***
16629352-AAAG-A,AAA 14517472-AAAG-A,AAA ***
21915632-C-T 19753746-C-T ***
16897455-T-C 14785575-T-C ***
17923389-A-G 15811509-A-G ***
17452977-G-C 15341097-G-C ***
21056131-T-C 18894245-T-C ***
18688500-C-CA,CAAA 16576620-C-CA,CAAA 20×A***
23518966-A-T 21357080-A-T ***
23475277-C-T 21313391-C-T ***
10988869-C-T ***
23475285-C-T 21313399-C-T ***
10994156-A-C ***
22509999-C-T 20348113-C-T DYZ19 ***
6134343-A-G 6266302-A-G ***
15374441-GTT-G,GT 13262561-GTT-G,GT 20×T***
2769059-A-G 2901018-A-G ***
10760667-C-A ***
15424466-C-A 13312586-C-A ***
15380076-C-T 13268196-C-T ***
23789409-G-A 21627523-G-A ***
6354248-T-C 6486207-T-C ***
22466279-G-A 20304393-G-A DYZ19 ***
10818945-C-A FGC79868 ***
4031678-CA-C 4163637-CA-C 9×A***
14153112-C-A 12032406-C-A ***
16693136-CT-C 14581256-CT-C 10×T***
3561559-C-T 3693518-C-T ***
14914672-CTT-C,CTTT 12802739-CTT-C,CTTT 17×T***
3838364-T-TA 3970323-T-TA ***
11677394-G-A ***
17914618-C-A 15802738-C-A ***
22339948-A-T 20178062-A-T DYZ19 ******
10949973-T-A ***
13457383-ATTCCATTCCA-A,ATTCCATTCAATAC 11301707-ATTCCATTCCA-A,ATTCCATTCAATAC ***
8648172-GATATAT-G,GAT 8780131-GATATAT-G,GAT 14×AT***
10976176-C-A ***
13505768-G-A 11350092-G-A ***
14672755-C-G 12560821-C-G ***
11033122-G-T ***
22077357-TAA-T,TAAA 19915471-TAA-T,TAAA 14×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 493823993198880835327953845
Kit: 4938231477139092549818239922
Used in age calculations1477139092549818239922
Counts of SNPs4136
Variant counts last updated 2019-12-30 02:43:12.



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