Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > BY653 > BY21118 > BY21141

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
728518
24304576-G-A 22158429-G-A P3_t1 A*
22313916-G-A 20152030-G-A DYZ19 A*
24302017-G-A 22155870-G-A P3_t1 A*
18297294-C-T 16185414-C-T P6_Prx A*
25985884-C-T 23839737-C-T P1_Y1 A*
20799497-A-G 18637611-A-G P4_Prx A*
25873008-C-A 23726861-C-A P1_Y1 A*
22289984-C-G 20128098-C-G DYZ19 A*
19751713-C-T 17639833-C-T P5_Prx A*
19604684-G-A 17492804-G-A P5_Prx YA*
28817431-A-T 26671284-A-T A*
2733022-A-AT 2864981-A-AT 11×TA*
24255782-C-T 22109635-C-T P3_b1 A*
24351306-C-T 22205159-C-T P3_t1 A*
23145109-T-C 20983223-T-C Y129487 YY+
19440199-G-A 17328319-G-A BY36418 Y129730 YY+
23238637-CT-C 21076751-CT-C +
23236949-T-G 21075063-T-G BY36422 Y129744 Y+
15306804-A-T 13194906-A-T PH1652 YY+
14063856-A-G 11943150-A-G Y128898 BY36410 YY+
14219940-C-A 12099234-C-A BY36411 Y128802 YY+
22476561-A-AT 20314675-A-AT DYZ19 +
22466900-G-C 20305014-G-C BY36420 DYZ19 +
17241324-G-A 15129444-G-A BY36416 YY+
22256515-G-T 20094629-G-T BY36419 DYZ19 +
22241116-G-T 20079230-G-T BY213959 DYZ19 +
15611682-T-C 13499802-T-C BY36413 Y130047 YY+
15268317-C-T 13156406-C-T BY36412 Y129978 YY+
3609988-T-G 3741947-T-G BY57739 +
22468807-T-C 20306921-T-C BY36421 DYZ19 +
23567260-C-T 21405374-C-T BY36423 YY+
18425830-G-A 16313950-G-A BY36417 P6_Gap +
16820705-A-G 14708825-A-G Y128026 BY36415 YY+
7960122-G-A 8092081-G-A Y128622 YY+
24499544-T-A 22353397-T-A Y128443 +
7221900-AGACAAGGTCTCACTC-A 7353859-AGACAAGGTCTCACTC-A +
7221883-GT-G 7353842-GT-G +
9424886-G-T 9587277-G-T Y130465 BY36408 YY+
8162002-C-T 8293961-C-T BY36407 YY+
16462031-A-G 14350151-A-G Y129846 BY36414 YY+
10029834-A-T 10192225-A-T BY83163 Y+
7068867-G-C 7200826-G-C BY36406 Y128127 YY+
16957114-CAT-C 14845234-CAT-C +
9853945-C-T 10016336-C-T Y129173 BY36409 YY+
22320052-C-A 20158166-C-A BY217455 DYZ19 *
22253683-A-T 20091797-A-T FGC16611 F7626 DYZ19 *
28813268-G-T 26667121-G-T *
22257872-A-T 20095986-A-T DYZ19 *
13142899-T-TATTCC 10632385-T-TATTCC 4×ATTCC*
22294650-G-T 20132764-G-T BY216573 DYZ19 *
6154582-C-G 6286541-C-G BY59355 IR3_Dst *
15542061-C-A 13430181-C-A **
15146390-A-C 13034477-A-C **
14931900-C-A 12819965-C-A **
16004490-C-A 13892610-C-A **
15622638-G-A 13510758-G-A **
16738522-T-C 14626642-T-C **
16501372-C-A 14389492-C-A **
15682924-G-T 13571044-G-T **
15731366-G-T 13619486-G-T **
15763223-G-T 13651343-G-T **
15843036-T-C 13731156-T-C **
15843039-A-G 13731159-A-G **
16298379-C-A 14186499-C-A **
16291925-C-A 14180045-C-A **
16053457-C-A 13941577-C-A **
15893316-G-T 13781436-G-T **
14765187-C-A 12653256-C-A **
15962396-G-T 13850516-G-T **
14785675-A-G 12673745-A-G **
14352914-C-A 12232209-C-A **
14688633-C-A 12576699-C-A **
11017433-C-A **
13231660-C-A 11075984-C-A **
13230466-TAGAACTTAA-T 11074790-TAGAACTTAA-T **
11034838-C-CCATTT **
11034835-A-G **
11031617-AT-A **
11018169-A-T **
11017446-T-C **
11017423-C-A **
13460644-C-A 11304968-C-A **
11017420-A-G **
11011987-C-A **
11006788-C-A **
11001591-C-CTCCTT **
10998232-A-T **
10994401-C-G **
10993046-C-T **
13271785-AAACAAC-A 11116109-AAACAAC-A **
13460651-C-A 11304975-C-A **
14681946-G-T 12570012-G-T **
14059296-C-A 11938590-C-A **
14505930-C-A 12394135-C-A **
14456180-C-A 12335453-C-A **
14447228-G-T 12326501-G-T **
14445550-G-A 12324823-G-A **
14413230-AAAAC-A 12292527-AAAAC-A **
14313645-A-C 12192939-A-C **
14225270-C-A 12104564-C-A **
14023025-C-A 11902319-C-A **
13460657-C-A 11304981-C-A **
13886001-C-A 11765295-C-A **
13809859-G-T 11689153-G-T **
11675603-C-T **
11643661-A-C **
13722157-T-G 11566481-T-G **
13635219-G-T 11479543-G-T **
13594457-C-A 11438781-C-A **
13483856-C-A 11328180-C-A **
16986996-C-A 14875116-C-A **
18996506-C-A 16884626-C-A **
17212300-T-TTA 15100420-T-TTA 12×A**
23276536-C-A 21114650-C-A **
24296184-T-A 22150037-T-A P3_t1 **
24050337-G-T 21904190-G-T P3_b1 **
24047569-G-T 21901422-G-T **
23544916-C-A 21383030-C-A **
23522365-G-T 21360479-G-T **
23285243-T-A 21123357-T-A **
23096808-C-A 20934922-C-A **
24545041-C-A 22398894-C-A P3_t2 **
23096629-G-A 20934743-G-A **
23026685-C-A 20864799-C-A **
22997447-C-A 20835561-C-A **
22520526-C-A 20358640-C-A **
22517179-C-A 20355293-C-A FT51423 **
22489478-G-A 20327592-G-A DYZ19 **
24544976-A-T 22398829-A-T P3_t2 **
24604613-G-T 22458466-G-T P3_t2 **
22354977-A-T 20193091-A-T DYZ19 **
28561856-C-A 26415709-C-A **
56846521-A-T **
28815222-T-G 26669075-T-G **
28792473-A-T 26646326-A-T BY39970 **
28754880-C-A 26608733-C-A **
28618866-C-A 26472719-C-A **
28607873-C-A 26461726-C-A **
28532669-C-A 26386522-C-A **
26010311-C-CAT 23864164-C-CAT P1_Y1 **
28517271-C-A 26371124-C-A **
28469380-T-C 26323233-T-C **
27971766-CA-C 25825619-CA-C P1_Y2 4×AAAGA**
27647767-G-T 25501620-G-T P1_Y2 **
27516039-G-T 25369892-G-T P1_Y2 **
26386458-G-T 24240311-G-T P1_Y1 **
22428007-T-C 20266121-T-C DYZ19 **
22341075-T-A 20179189-T-A DYZ19 **
17633684-T-C 15521804-T-C **
18579103-C-T 16467223-C-T **
19130737-TC-T 17018857-TC-T **
19125148-C-A 17013268-C-A **
19059375-A-T 16947495-A-T **
10993035-A-C **
18864675-C-A 16752795-C-A **
18758950-C-CTT 16647070-C-CTT 13×T**
18471760-G-T 16359880-G-T P6_Dst **
20052747-G-T 17940867-G-T P5_Prx **
18307693-C-A 16195813-C-A P6_Prx **
18246355-G-T 16134475-G-T **
18246335-G-T 16134455-G-T **
18035739-G-A 15923859-G-A **
17859968-A-C 15748088-A-C **
17798691-C-A 15686811-C-A **
19992572-T-G 17880692-T-G P5_Prx **
20446462-G-GT 18284576-G-GT P5_Dst **
22176297-C-A 20014411-C-A **
21665644-G-A 19503758-G-A **
22167968-A-C 20006082-A-C **
22155545-C-A 19993659-C-A **
22092964-C-A 19931078-C-A **
22079621-C-G 19917735-C-G **
22057322-G-T 19895436-G-T **
21899803-A-C 19737917-A-C **
21574038-A-G 19412152-A-G **
20629002-A-T 18467116-A-T P4_Prx **
21554762-C-A 19392876-C-A **
21496915-G-T 19335029-G-T **
21443404-CT-C 19281518-CT-C **
21315051-A-C 19153165-A-C **
21306614-A-G 19144728-A-G **
21082072-C-A 18920186-C-A **
20705721-C-A 18543835-C-A P4_Prx **
10993045-A-G **
10992586-C-T **
22341095-T-A 20179209-T-A DYZ19 **
3078348-C-A 3210307-C-A **
4201160-C-A 4333119-C-A **
3887491-G-T 4019450-G-T **
3831485-C-T 3963444-C-T **
3725783-C-A 3857742-C-A **
3627423-C-A 3759382-C-A **
3541492-G-T 3673451-G-T **
3092661-G-T 3224620-G-T **
2938529-A-T 3070488-A-T **
4236027-G-T 4367986-G-T **
2773505-G-T 2905464-G-T **
2729712-A-T 2861671-A-T **
2669741-C-A 2801700-C-A **
2669069-C-A 2801028-C-A **
7098756-C-A 7230715-C-A **
15302762-T-A 13190861-T-A **
11030098-C-A **
19302747-G-T 17190867-G-T **
4230024-C-G 4361983-C-G **
4476808-C-A 4608767-C-A **
9629452-A-AG 9791843-A-AG IR3_Prx **
5619407-G-T 5751366-G-T **
7166815-C-T 7298774-C-T **
7140936-C-A 7272895-C-A **
7105143-G-A 7237102-G-A **
7045338-C-A 7177297-C-A **
10992004-C-A **
6770864-C-A 6902823-C-A **
5851233-C-A 5983192-C-A **
5446487-C-A 5578446-C-A **
4510048-G-A 4642007-G-A **
5322964-C-A 5454923-C-A **
5247399-T-G 5379358-T-G **
5189280-C-A 5321239-C-A **
5186851-T-C 5318810-T-C **
5112225-G-T 5244184-G-T **
4985158-C-A 5117117-C-A **
4985110-C-A 5117069-C-A **
4680026-G-T 4811985-G-T **
4388544-C-A 4520503-C-A **
10791367-C-T **
7320376-C-A 7452335-C-A **
22341085-T-A 20179199-T-A DYZ19 **
10887407-C-A **
16060335-C-A 13948455-C-A **
16450503-C-A 14338623-C-A **
13870717-C-A 11750011-C-A **
10935404-C-A **
10946654-G-C **
9025254-C-A 9187645-C-A **
16341060-C-A 14229180-C-A **
10776090-C-A **
13271806-C-A 11116130-C-A **
10899086-A-G **
4740731-G-A 4872690-G-A **
10899067-T-A **
10664395-A-T **
13491013-C-A 11335337-C-A **
15012756-C-A 12900844-C-A **
22356870-A-T 20194984-A-T DYZ19 **
10860802-G-T **
10667672-T-C **
7996928-C-A 8128887-C-A **
10799601-A-T **
11015199-C-T **
10987291-C-T **
4626125-C-A 4758084-C-A **
8159662-C-A 8291621-C-A **
11004801-G-T **
10646641-C-A **
13858028-T-A 11737322-T-A **
21285397-C-A 19123511-C-A **
10664428-G-C **
15334933-C-A 13223051-C-A **
10664424-T-C **
56843488-C-T **
18892174-C-A 16780294-C-A **
13257446-G-A 11101770-G-A **
10792767-C-G **
14253177-C-A 12132471-C-A **
13902162-C-A 11781456-C-A **
10792753-C-A **
7185254-G-T 7317213-G-T **
30066-C-A **
7425214-T-G 7557173-T-G **
10770503-C-CT **
10792739-A-G **
10792730-T-TC **
10792728-CA-C **
10776320-A-T **
10776101-A-T **
10776100-C-T **
10773405-C-A **
10770502-C-CTATTGCTTT **
10792783-C-A **
10770475-G-A **
7469864-C-A 7601823-C-A IR1_L **
10753265-C-A **
10753259-C-T **
10753240-C-T **
10753226-ATTCC-A **
10753224-C-T **
10792776-T-TACGTG **
10822246-C-A **
10746700-C-T **
10899059-C-G **
10956479-C-A **
10954346-C-A **
10946646-T-TTCTGC **
10943149-T-C **
10943139-G-C **
10938594-C-A **
10899098-T-G **
10872361-C-A **
10823434-T-G **
10869311-C-A **
10862881-C-A **
10859681-A-C **
10859658-T-C **
10859651-A-T **
10844617-C-A **
10841070-C-TAAATT **
10841060-T-G **
10753217-T-A **
10753495-G-T **
10746653-CACTCA-C **
9964355-C-A 10126746-C-A **
9913329-G-T 10075720-G-T **
10023753-T-G 10186144-T-G **
10032651-T-G 10195042-T-G **
9657456-TCCATG-T 9819847-TCCATG-T IR3_Prx **
10654140-C-A **
8974507-T-C 9136898-T-C **
10746632-ACACTC-A **
10659981-T-TTGCAC **
8913802-G-T 9045761-G-T **
8849829-C-A 8981788-C-A **
8799720-A-C 8931679-A-C **
8350120-C-A 8482079-C-A **
10663906-G-T **
10664371-C-A **
10664376-T-G **
10673353-G-T **
10744970-T-TTCCAA **
7709331-C-A 7841290-C-A **
7757194-C-A 7889153-C-A **
10688998-CA-C **
10685881-C-G **
7935817-C-T 8067776-C-T **
9968420-C-A 10130811-C-A **
7986745-G-T 8118704-G-T **
10667988-C-G **
10664440-A-T **
10664421-C-T **
8333591-C-G 8465550-C-G **
15976646-C-A 13864766-C-A ***
10900704-C-A ***
18847786-C-A 16735906-C-A ***
10894538-C-A ***
18210272-T-TA 16098392-T-TA ***
56851458-C-A ***
11022669-C-A ***
10965551-CTCCATTCCAT-C ***
10842505-C-A ***
3923019-C-A 4054978-C-A ***
8280915-C-A 8412874-C-A ***
15198929-C-A 13087015-C-A ***
2833178-CTTT-C,CT 2965137-CTTT-C,CT 19×T***
15236025-T-C 13124111-T-C ***
14366627-C-A 12245922-C-A ***
22600308-C-A 20438422-C-A ***
11033158-C-CGGAAG ***
13846529-C-A 11725823-C-A ***
10652471-C-G ***
23419531-C-A 21257645-C-A ***
13811148-G-T 11690442-G-T ***
10663849-C-A ***
4243636-CTAACAAGCA-C 4375595-CTAACAAGCA-C ***
21754271-C-A ***
21308233-T-C 19146347-T-C ***
18082920-GTT-G 15971040-GTT-G 11×T***
10796687-C-CGGAGG ***
19057947-C-A 16946067-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 728518964888878820117767852
Used in age calculations964888878820117767852
Counts of SNPs1916
Variant counts last updated 2019-07-19 21:30:59.



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