Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > BY3548 > Z43/S366 > Z144 > BY28794 > BY41133

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
35655
26202050-G-GA 24055903-G-GA P1_Y1 9×AA*
18321209-G-A 16209329-G-A FT157725 P6_Prx A*
19773992-G-A 17662112-G-A P5_Prx A*
19800747-C-A 17688867-C-A P5_Prx A*
19812254-C-G 17700374-C-G P5_Prx A*
6294474-A-G 6426433-A-G IR3_Dst A*
25994829-A-T 23848682-A-T P1_Y1 A*
13687801-G-T 11532125-G-T A*
13449825-C-A 11294149-C-A A*
22466903-A-T 20305017-A-T BY221805 DYZ19 +
18419407-C-T 16307527-C-T BY121865 P6_Gap +
22466189-A-T 20304303-A-T BY221683 DYZ19 +
22475784-G-A 20313898-G-A BY223426 DYZ19 +
22457548-C-T 20295662-C-T BY219938 DYZ19 +
22596184-A-C 20434298-A-C BY139377 YY+
21529891-A-T 19368005-A-T BY133617 YY+
22961907-G-A 20800021-G-A BY142069 YY+
23239506-G-A 21077620-G-A BY143949 Y+
18895353-T-G 16783473-T-G BY124600 YY+
15924294-G-A 13812414-G-A BY104914 YY+
18102896-C-T 15991016-C-T BY120030 YY+
18065249-TC-T 15953369-TC-T +
23745565-C-A 21583679-C-A BY147320 +
15559445-AAAAT-A 13447565-AAAAT-A +
15536814-T-C 13424934-T-C BY102339 YY+
15484802-T-C 13372922-T-C BY101892 YY+
14914315-G-T 12802382-G-T BY98448 YY+
14893062-G-A 12781128-G-A BY98305 YY+
7943154-T-A 8075113-T-A BY68944 YY+
8662418-A-G 8794377-A-G BY75032 YY+
9376993-G-A 9539384-G-A BY78902 Y+
9454845-C-G 9617236-C-G BY79508 YY+
9468119-C-G 9630510-C-G BY79632 +
9856098-T-C 10018489-T-C BY81495 YY+
23729554-T-C 21567668-T-C BY147139 +
16716313-G-A 14604433-G-A BY109598 YY+
28782438-A-G 26636291-A-G BY151192 +
13828127-G-A 11707421-G-A BY90799 +
33181-C-T *
22335028-T-G 20173142-T-G DYZ19 *
13452849-C-T 11297173-C-T *
22268619-C-T 20106733-C-T DYZ19 *
19663304-T-C 17551424-T-C P5_Prx *
14508664-A-T 12396869-A-T **
14483304-C-A 12362573-C-A **
14468310-C-A 12347579-C-A **
14295353-C-A 12174647-C-A **
14525878-A-G 12414079-A-G **
14463373-T-C 12342646-T-C **
14395747-C-A 12275043-C-A **
14531368-AT-A 12419569-AT-A **
14392892-C-A 12272188-C-A **
14354491-G-T 12233786-G-T FT116640 **
14295441-G-T 12174735-G-T **
14532047-G-C 12420248-G-C **
21753383-T-C **
14272198-C-A 12151492-C-A **
14279108-C-A 12158402-C-A **
14029131-T-C 11908425-T-C **
13938374-C-A 11817668-C-A **
13953098-C-A 11832392-C-A **
28747870-C-A 26601723-C-A **
13953437-T-A 11832731-T-A **
13961392-C-A 11840686-C-A **
13963072-C-A 11842366-C-A **
14076106-C-A 11955400-C-A **
14279066-C-A 12158360-C-A **
14086005-C-A 11965299-C-A **
14122904-C-T 12002198-C-T **
14175098-C-A 12054392-C-A **
14184254-C-A 12063548-C-A **
14226475-A-T 12105769-A-T **
14539675-C-A 12427876-C-A **
14537906-C-A 12426107-C-A **
14625519-C-A 12513787-C-A **
14558553-A-G 12446754-A-G **
15364050-A-T 13252170-A-T **
15142519-A-T 13030606-A-T **
15193594-C-A 13081680-C-A **
15221067-C-A 13109153-C-A **
15363936-T-A 13252056-T-A **
15363953-G-C 13252073-G-C **
15363957-G-A 13252077-G-A **
15396783-C-G 13284903-C-G **
15142280-C-A 13030367-C-A **
15402568-T-C 13290688-T-C **
15403496-GACGGG-T 13291616-GACGGG-T **
28598397-C-A 26452250-C-A **
28534423-A-T 26388276-A-T **
28516747-T-G 26370600-T-G **
15685730-A-G 13573850-A-G **
15142307-A-G 13030394-A-G **
15140958-G-A 13029045-G-A **
13913741-TAAA-T 11793035-TAAA-T 13×A**
28712866-T-G 26566719-T-G **
14667965-A-C 12556031-A-C **
14717590-AG-A 12605658-AG-A **
14718609-G-T 12606677-G-T **
14718786-C-A 12606854-C-A **
14724647-C-A 12612715-C-A **
14757330-C-A 12645399-C-A **
28620621-T-C 26474474-T-C **
15117030-C-G 13005117-C-G **
14933877-T-G 12821942-T-G **
28609580-C-G 26463433-C-G FT97362 **
15045586-C-T 12933676-C-T **
15045603-T-TG 12933693-T-TG **
15045606-A-G 12933696-A-G **
15045619-T-C 12933709-T-C **
15098649-C-T 12986737-C-T **
13921621-A-G 11800915-A-G **
11676574-C-A **
13904965-T-G 11784259-T-G **
10947753-A-C **
11009649-T-C **
10996642-C-A **
10995333-C-A **
10994884-A-T **
10993430-C-A **
10992666-C-A **
10989316-C-A **
10980112-C-A **
10977069-T-TCCA **
10972399-C-A **
10972319-C-A **
10969470-C-T FT92138 **
10963347-C-A **
10950596-C-A **
10935956-C-A **
11011253-C-G **
10933327-T-A **
10932207-A-T **
10932176-C-T **
10932173-C-T **
10932163-T-C **
10931608-G-T **
10928999-A-T **
10908042-G-T **
10901883-C-A **
10901108-C-A **
10885378-T-G **
10884266-C-A **
10884242-C-A **
10876828-C-A **
11010139-A-T **
11014060-C-A **
13904942-T-G 11784236-T-G **
56848656-T-C **
15742201-G-A 13630321-G-A **
11668524-G-C **
11664206-G-T **
11664151-G-A **
11662721-C-A **
11647188-A-C **
11647153-A-G **
13690244-C-A 11534568-C-A **
28803705-G-T 26657558-G-T **
13632760-C-T 11477084-C-T **
13527074-A-G 11371398-A-G **
13525683-T-C 11370007-T-C **
13462258-C-G 11306582-C-G **
56841641-C-A **
56870182-C-A **
11016551-C-A **
11037139-A-G **
11018661-G-T **
11020957-C-A **
11027595-C-A **
11032437-C-A **
11037098-C-T **
11037119-A-ATTCCT **
11037146-T-C **
13411866-T-A 11256190-T-A **
11037164-A-T **
13215476-T-C 11059800-T-C **
13240722-G-A 11085046-G-A **
13308681-A-C 11153005-A-C **
13317355-T-A 11161679-T-A **
13405665-C-A 11249989-C-A **
15741762-C-A 13629882-C-A **
15844835-C-A 13732955-C-A **
15748252-G-T 13636372-G-T **
21243346-G-T 19081460-G-T **
27561688-G-T 25415541-G-T P1_Y2 **
21523248-C-T 19361362-C-T **
21495501-T-G 19333615-T-G FT119046 **
21476375-C-A 19314489-C-A **
21412299-C-CA 19250413-C-CA **
21412294-TTTTA-T 19250408-TTTTA-T **
21409660-A-T 19247774-A-T **
21394846-C-A 19232960-C-A **
21380685-T-C 19218799-T-C **
21375822-C-A 19213936-C-A **
21375617-C-A 19213731-C-A **
21325571-C-G 19163685-C-G **
21325133-G-T 19163247-G-T **
21268646-T-A 19106760-T-A **
21207674-G-C 19045788-G-C **
21677527-A-G 19515641-A-G **
27979802-T-TC 25833655-T-TC P1_Y2 **
19479363-C-A 17367483-C-A **
19532555-C-T 17420675-C-T **
19701461-C-G 17589581-C-G P5_Prx **
19720760-G-A 17608880-G-A P5_Prx **
28429533-C-G 26283386-C-G P1_gr2 **
19775337-GA-G 17663457-GA-G P5_Prx **
27979731-T-G 25833584-T-G P1_Y2 **
21189627-A-T 19027741-A-T **
20617549-A-T 18455663-A-T P4_Prx **
20631064-C-A 18469178-C-A P4_Prx **
20685108-C-A 18523222-C-A P4_Prx **
20824935-T-C 18663049-T-C P4_Gap **
21042722-C-A 18880836-C-A **
21068451-A-T 18906565-A-T 17×AT**
21581820-G-T 19419934-G-T **
21791626-G-T 19629740-G-T **
19463640-GC-G 17351760-GC-G **
23144212-C-A 20982326-C-A **
22965513-C-T 20803627-C-T **
23007252-G-A 20845366-G-A **
23038017-C-T 20876131-C-T **
23038089-C-A 20876203-C-A **
23087562-C-A 20925676-C-A **
23110842-G-T 20948956-G-T **
23184876-C-A 21022990-C-A **
22811839-T-G 20649953-T-G **
23188516-G-T 21026630-G-T **
23225670-A-T 21063784-A-T **
24127292-A-C 21981145-A-C P3_b1 **
23464882-C-A 21302996-C-A **
23569686-G-A 21407800-G-A **
23997213-A-G 21851066-A-G **
24405117-A-G 22258970-A-G **
22739559-C-CA 20577673-C-CA 8×A**
21794815-T-A 19632929-T-A **
26135605-T-TA 23989458-T-TA P1_Y1 **
21920377-T-A 19758491-T-A **
22130118-C-A 19968232-C-A Y108464 **
22134849-GA-G 19972963-GA-G **
22155461-C-A 19993575-C-A **
22241518-A-T 20079632-A-T DYZ19 **
22366347-G-C 20204461-G-C DYZ19 **
26057923-A-G 23911776-A-G P1_Y1 **
22690892-G-T 20529006-G-T **
24673085-A-G 22526938-A-G P3_b2 **
24614213-T-C 22468066-T-C P3_t2 **
22536828-A-T 20374942-A-T **
22537006-G-T 20375120-G-T **
22541213-C-A 20379327-C-A **
24407521-G-C 22261374-G-C **
19465662-C-A 17353782-C-A **
19462273-T-A 17350393-T-A **
15762531-G-A 13650651-G-A **
17163749-G-A 15051869-G-A **
10849962-T-C **
16729196-C-CT 14617316-C-CT **
16743106-C-T 14631226-C-T **
16987741-G-T 14875861-G-T **
17027476-C-A 14915596-C-A **
17029215-A-T 14917335-A-T **
17211318-C-A 15099438-C-A **
16657863-C-A 14545983-C-A **
17214804-A-G 15102924-A-G **
17222736-A-G 15110856-A-G **
17270632-G-A 15158752-G-A **
17285200-C-A 15173320-C-A **
17346195-T-G 15234315-T-G **
17433921-C-A 15322041-C-A **
16686740-G-T 14574860-G-T **
16475275-T-G 14363395-T-G **
17504940-C-A 15393060-C-A **
16012122-G-T 13900242-G-T **
23952525-G-A 21806378-G-A **
28510252-A-C 26364105-A-C **
15928722-GT-G 13816842-GT-G **
15971377-C-T 13859497-C-T **
15986646-C-T 13874766-C-T **
16006783-G-T 13894903-G-T **
16055207-G-A 13943327-G-A **
16450448-C-T 14338568-C-T **
16091241-C-A 13979361-C-A **
16228109-A-G 14116229-A-G **
16273457-C-G 14161577-C-G **
16273618-A-T 14161738-A-T **
16384730-T-C 14272850-T-C **
16426719-C-A 14314839-C-A **
17503747-G-T 15391867-G-T **
17548484-T-C 15436604-T-C **
19302742-T-A 17190862-T-A **
19056028-C-G 16944148-C-G **
28480424-G-T 26334277-G-T **
18577156-C-A 16465276-C-A **
18733846-A-G 16621966-A-G **
18749412-G-A 16637532-G-A **
18844802-G-C 16732922-G-C **
28461998-C-A 26315851-C-A **
19071148-C-A 16959268-C-A **
18305890-G-GGA 16194010-G-GGA P6_Prx **
19071321-G-A 16959441-G-A **
19072629-A-G 16960749-A-G **
19088555-C-A 16976675-C-A **
19122012-C-A 17010132-C-A **
19246754-C-A 17134874-C-A **
19254199-C-A 17142319-C-A **
18354421-G-T 16242541-G-T P6_Prx **
18183319-T-C 16071439-T-C **
17621505-C-A 15509625-C-A **
17859354-G-A 15747474-G-A **
17627870-C-A 15515990-C-A **
17702139-C-A 15590259-C-A **
17714876-T-C 15602996-T-C **
17776247-G-T 15664367-G-T **
17785720-CTTTT-C 15673840-CTTTT-C **
17854403-C-A 15742523-C-A **
17882818-C-A 15770938-C-A **
28492574-C-A 26346427-C-A FT119998 **
17886206-T-A 15774326-T-A **
17968912-T-A 15857032-T-A **
18054441-G-A 15942561-G-A **
28510141-A-T 26363994-A-T **
18086973-A-G 15975093-A-G **
18094053-A-T 15982173-A-T **
10850716-G-T **
10899791-G-T **
10840224-C-A **
3988133-T-C 4120092-T-C **
3925713-C-T 4057672-C-T **
3939728-G-T 4071687-G-T **
3987712-C-A 4119671-C-A **
3988005-A-T 4119964-A-T **
3988038-A-G 4119997-A-G **
3988073-G-C 4120032-G-C **
3988123-C-T 4120082-C-T FT95217 **
4053367-C-A 4185326-C-A **
3892041-C-A 4024000-C-A **
4062648-A-G 4194607-A-G **
4080874-C-A 4212833-C-A **
4093462-C-A 4225421-C-A **
4094386-T-C 4226345-T-C **
4104178-G-T 4236137-G-T **
4129924-C-T 4261883-C-T **
4167129-C-T 4299088-C-T **
3922257-A-G 4054216-A-G **
3854240-C-A 3986199-C-A **
4224035-G-T 4355994-G-T **
3641309-C-A 3773268-C-A **
3478288-C-A 3610247-C-A **
3545911-G-C 3677870-G-C FT112941 **
3570157-G-A 3702116-G-A **
3571574-C-A 3703533-C-A **
3603447-C-A 3735406-C-A **
3620884-A-T 3752843-A-T **
3629959-C-A 3761918-C-A **
3649154-C-T 3781113-C-T **
3844237-T-C 3976196-T-C **
3665003-G-T 3796962-G-T FT113044 **
3702781-T-C 3834740-T-C **
3737858-C-A 3869817-C-A **
3771320-G-T 3903279-G-T **
3799864-C-A 3931823-C-A **
3811437-T-G 3943396-T-G **
3811638-G-A 3943597-G-A **
3844207-A-C 3976166-A-C **
4217822-G-T 4349781-G-T **
4241512-C-A 4373471-C-A **
3470278-A-G 3602237-A-G **
4999648-C-A 5131607-C-A **
4805327-C-T 4937286-C-T **
4877585-A-C 5009544-A-C **
4890019-T-A 5021978-T-A **
4964509-T-A 5096468-T-A **
4969254-C-A 5101213-C-A **
4979007-G-T 5110966-G-T **
4979021-T-C 5110980-T-C **
5006479-A-G 5138438-A-G **
4717192-C-A 4849151-C-A **
5050975-G-T 5182934-G-T **
5058864-TT-A 5190823-TT-A **
5089972-C-A 5221931-C-A **
10831200-T-G **
5217551-C-A 5349510-C-A **
5219619-CT-C 5351578-CT-C **
5225910-G-T 5357869-G-T **
4801902-A-C 4933861-A-C **
4656950-C-A 4788909-C-A **
4242149-C-A 4374108-C-A **
4438731-C-A 4570690-C-A **
4286512-T-A 4418471-T-A **
4301323-C-A 4433282-C-A **
4301709-T-A 4433668-T-A **
4302445-T-C 4434404-T-C **
4307263-C-A 4439222-C-A **
4356950-T-A 4488909-T-A **
4437639-C-A 4569598-C-A **
4443255-T-C 4575214-T-C **
4647499-G-T 4779458-G-T **
4447050-G-T 4579009-G-T **
4532159-G-T 4664118-G-T **
4532590-A-T 4664549-A-T **
4554730-C-A 4686689-C-A **
4563519-T-C 4695478-T-C **
4586352-CTT-C 4718311-CTT-C 11×T**
4620653-T-G 4752612-T-G **
4630513-G-T 4762472-G-T **
3475622-G-T 3607581-G-T **
3461244-C-CT 3593203-C-CT 9×T**
5230485-C-A 5362444-C-A **
9731618-T-TG 9894009-T-TG IR3_Prx **
17317463-C-A 15205583-C-A **
21078969-C-A 18917083-C-A **
26060205-A-G 23914058-A-G P1_Y1 **
18756294-C-A 16644414-C-A **
10949191-G-T **
16039351-C-A 13927471-C-A **
10773164-C-T **
16520941-G-A 14409061-G-A **
3848543-C-A 3980502-C-A **
10982406-C-A **
17492324-G-T 15380444-G-T **
10986024-C-A **
15864238-C-A 13752358-C-A **
10896081-C-A **
10781232-C-T **
10781237-C-T **
10994197-T-G **
15986592-C-A 13874712-C-A **
5393362-C-CGGA 5525321-C-CGGA 10×GGA**
6024572-ATG-A 6156531-ATG-A **
7363891-G-A 7495850-G-A S3796 CTS1365 **
4240397-C-A 4372356-C-A **
15442442-G-C 13330562-G-C CTS4164 **
3734665-C-T 3866624-C-T **
14499529-C-T 12387734-C-T F19007 **
22113714-T-A 19951828-T-A PF2190 **
59008339-G-A 56862192-G-A **
5358558-C-A 5490517-C-A **
20570265-C-A 18408379-C-A P5_Dst **
10830984-C-A **
10975760-C-G **
20809847-A-G 18647961-A-G P4_Gap **
10914548-G-T **
10946546-C-T **
22170603-C-A 20008717-C-A **
28484520-C-A 26338373-C-A **
10949186-G-T **
11654649-G-A **
7138311-C-A 7270270-C-A **
3454837-TTG-T 3586796-TTG-T **
3368499-C-A 3500458-C-A **
2915264-T-C 3047223-T-C **
3025178-T-C 3157137-T-C **
3112504-G-A 3244463-G-A **
3119407-T-C 3251366-T-C **
3146614-T-C 3278573-T-C **
3188926-C-A 3320885-C-A **
3197417-C-A 3329376-C-A **
3380046-C-G 3512005-C-G **
2792523-G-T 2924482-G-T **
3390597-C-A 3522556-C-A **
3397052-C-A 3529011-C-A **
3410845-C-A 3542804-C-A **
3435063-A-G 3567022-A-G **
3435154-G-A 3567113-G-A **
3435245-G-T 3567204-G-T **
3435259-A-C 3567218-A-C **
2865855-G-A 2997814-G-A **
13896020-C-A 11775314-C-A **
24406598-G-T 22260451-G-T **
22730567-C-A 20568681-C-A **
20026763-T-TC 17914883-T-TC P5_Prx **
5447049-A-G 5579008-A-G **
10808160-C-A **
4129928-C-A 4261887-C-A **
23035980-G-GA 20874094-G-GA 9×A**
4521518-C-A 4653477-C-A **
8736617-C-A 8868576-C-A **
10856275-C-T **
10883857-C-A **
10856277-C-A **
10856281-T-C **
20661851-C-A 18499965-C-A P4_Prx **
28558869-C-A 26412722-C-A **
5368169-G-T 5500128-G-T **
14499523-G-A 12387728-G-A **
25966260-C-T 23820113-C-T P1_Y1 **
2974342-C-A 3106301-C-A **
5228553-A-C 5360512-A-C **
5188528-G-C 5320487-G-C **
5262962-A-T 5394921-A-T **
9501229-C-A 9663620-C-A **
9081629-C-A 9244020-C-A **
9082115-T-G 9244506-T-G **
9377908-G-C 9540299-G-C **
9427578-A-C 9589969-A-C **
9431655-A-G 9594046-A-G **
9444766-T-C 9607157-T-C **
9908524-G-T 10070915-G-T **
9109742-G-T **
9912991-G-A 10075382-G-A **
9956658-C-A 10119049-C-A **
9996448-C-T 10158839-C-T **
10034172-C-A 10196563-C-A **
10060764-C-A 10223155-C-A **
10070155-T-G 10232546-T-G **
8976855-G-T 9139246-G-T **
9056661-C-T **
10651540-C-G **
8074264-G-T 8206223-G-T **
7343756-G-T 7475715-G-T M12433 **
7369101-C-A 7501060-C-A **
7369121-C-A 7501080-C-A **
7503823-AT-A 7635782-AT-A IR1_L **
7753127-T-C 7885086-T-C **
7894728-A-C 8026687-A-C **
8112491-G-A 8244450-G-A **
9055557-G-T **
8237367-C-A 8369326-C-A **
8270038-A-G 8401997-A-G **
8325615-T-C 8457574-T-C **
5310220-C-A 5442179-C-A **
8712919-T-C 8844878-T-C **
8822488-G-A 8954447-G-A **
10083699-T-C 10246090-T-C **
10656205-G-T **
7277514-C-A 7409473-C-A **
10804944-C-T **
10781224-GGC-G **
10781229-A-ACT **
10788904-A-G **
10792862-T-C **
10795611-T-C **
10800273-T-C **
10812973-G-T **
10781191-G-A **
10818275-C-A **
10819831-A-T **
10820559-C-A **
10829142-C-A **
10829364-T-TTCC **
10831169-T-A **
10781212-C-G **
10781172-C-T **
10689102-C-A **
10756639-C-T **
10690566-C-A **
10690830-G-T **
10756559-C-G **
10756576-T-G **
10756589-C-T **
10756611-TTCCAC-T **
10756640-A-AT **
10781167-C-A **
10756643-GT-C **
10759135-C-A **
10761665-C-A **
10777082-C-A **
10781133-ATTCAT-A **
10781156-C-A **
7342209-T-C 7474168-T-C **
8668362-T-G 8800321-T-G **
7238061-C-A 7370020-C-A **
7209992-C-A 7341951-C-A **
5755038-T-C 5886997-T-C **
5755110-G-A 5887069-G-A **
5757739-G-T 5889698-G-T **
5803153-T-C 5935112-T-C **
5843125-A-G 5975084-A-G **
5851345-C-A 5983304-C-A **
5975001-C-A 6106960-C-A **
5674260-T-A 5806219-T-A **
5990725-G-T 6122684-G-T **
6001498-C-G 6133457-C-G **
6004319-C-A 6136278-C-A **
6019898-A-C 6151857-A-C **
6041778-G-T 6173737-G-T **
6051769-G-T 6183728-G-T **
5689094-T-C 5821053-T-C **
5669277-A-G 5801236-A-G **
6074603-G-T 6206562-G-T **
5548731-T-A 5680690-T-A **
5316805-T-A 5448764-T-A **
5334382-C-A 5466341-C-A **
5358940-C-A 5490899-C-A **
5365929-G-T 5497888-G-T **
5443977-A-C 5575936-A-C **
5527237-A-G 5659196-A-G **
5572541-G-A 5704500-G-A **
5649299-C-A 5781258-C-A **
5572553-G-C 5704512-G-C **
5572572-T-A 5704531-T-A **
5572574-C-T 5704533-C-T **
5572575-C-G 5704534-C-G **
5576669-C-G 5708628-C-G **
5603451-T-C 5735410-T-C **
5605964-TG-T 5737923-TG-T **
6051860-G-T 6183819-G-T **
5965688-C-A 6097647-C-A **
6305400-A-T 6437359-A-T IR3_Dst **
7029683-T-A 7161642-T-A **
6624691-G-T 6756650-G-T **
6713510-C-A 6845469-C-A **
6807151-C-T 6939110-C-T **
6807991-C-A 6939950-C-A **
6881283-C-A 7013242-C-A **
6923055-A-T 7055014-A-T **
7080815-A-AT 7212774-A-AT **
6605668-T-A 6737627-T-A **
7116377-C-A 7248336-C-A **
7138359-T-G 7270318-T-G **
7142740-T-C 7274699-T-C **
7148232-T-A 7280191-T-A **
7148255-C-A 7280214-C-A **
7170389-A-C 7302348-A-C **
7182024-G-A 7313983-G-A **
6605807-T-C 6737766-T-C **
33970-G-T **
6523984-C-A 6655943-C-A **
6492638-G-C 6624597-G-C **
6482642-A-G 6614601-A-G **
6475424-G-C 6607383-G-C **
6530004-C-A 6661963-C-A **
6530212-T-C 6662171-T-C **
6536362-A-G 6668321-A-G **
6459921-C-A 6591880-C-A **
6579993-A-G 6711952-A-G **
56834934-T-C ***
10017059-GTC-G 10179450-GTC-G ***
16065037-G-T 13953157-G-T ***
18249997-T-A 16138117-T-A ***
9513257-T-C 9675648-T-C ***
7332775-C-A 7464734-C-A ***
56851361-G-T ***
28550214-G-T 26404067-G-T ***
9979218-G-T 10141609-G-T ***
16429558-G-T 14317678-G-T ***
11016436-C-A ***
10816143-G-T ***
10826871-CACCAC-CTTCAC,T ***
16369735-GAAAA-G 14257855-GAAAA-G 15×A***
13457716-G-GATTCCATTCC 11302040-G-GATTCCATTCC 12×ATTCC***
10889862-C-A ***
23098815-TCAAAAAA-T,TAAAAAAA 20936929-TCAAAAAA-T,TAAAAAAA ***
10684002-C-A ***
19253120-G-T 17141240-G-T ***
17502857-C-T 15390977-C-T ***
10997578-A-G ***
11648569-G-A ***
17538149-G-T 15426269-G-T ***
11643014-G-A ***
9077096-G-T 9239487-G-T ***
10991264-C-G ***
10991251-A-G ***
10991215-C-T ***
21757416-G-T ***
10935484-A-C,G ***
10988670-C-A ***
10986459-C-T ***
10869807-C-A ***
10779381-TC-T ***
11666984-G-A ***
8481808-CT-C,CTT 8613767-CT-C,CTT 11×T***
10952230-T-A,C ***
15676820-C-A 13564940-C-A ***
11005105-C-A ***
10946676-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 356551020902781980178036481
Used in age calculations1020902781980178036481
Counts of SNPs1715
Variant counts last updated 2019-11-29 02:41:08.



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