Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > S5488 > Z16294 > BY11121 > ZZ21 > FGC63891

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
B4NFE
22064714-G-A 19902828-G-A FGC72527 Y133685 Y+
23399263-C-G 21237377-C-G FGC72529 Y133711 Y+
6588538-T-C 6720497-T-C FGC72517 +
4688046-T-A 4820005-T-A FGC72515 +
4580224-G-T 4712183-G-T FGC72514 +
4238293-T-C 4370252-T-C FGC72513 +
3346303-G-A 3478262-G-A FGC72512 +
3260173-C-T 3392132-C-T FGC72511 A20824 +
15041968-C-T 12930058-C-T FGC72523 Y133699 YY+
13541925-A-G 11386249-A-G FGC72519 A20825 +
28625414-T-C 26479267-T-C FGC72530 Y133706 +
21154803-G-C 18992917-G-C FGC72526 Y133695 Y+
17802153-G-C 15690273-G-C FGC72524 YY+
8373744-C-A 8505703-C-A FGC72518 Y133712 YY+
22599402-C-T 20437516-C-T FGC72528 Y133668 YY+
18491804-A-G 16379924-A-G FGC72525 A20826 P6_Dst *
13606803-C-T 11451127-C-T FGC72520 Y133697 *
3245970-G-A 3377929-G-A FGC72510 A20823 *
4752766-C-T 4884725-C-T FGC72516 Y133730 *
22446536-G-A 20284650-G-A DYZ19 **
27417760-TTA-T 25271613-TTA-T P1_g3 24×TA**
28478038-T-TAG 26331891-T-TAG 23×AG**
23398944-A-G 21237058-A-G **
10058035-G-A 10220426-G-A **
19487511-T-C 17375631-T-C **
3902916-A-T 4034875-A-T **
15278736-T-TTTATA 13166825-T-TTTATA 6×TTATA**
2688624-T-A 2820583-T-A **
18795286-G-T 16683406-G-T **
13566948-CAT-C 11411272-CAT-C 12×AT**
15278821-T-TTTATA 13166915-T-. 6×TTATA**
15301382-A-G 13189481-A-G **
24910853-C-CATATATATATATAT 22764706-C-CATATATATATATAT g1 26×AT**
17320022-A-AAAGG 15208142-A-AAAGG **
9409771-C-T 9572162-C-T **
7121947-C-T 7253906-C-T **
5585934-GTAC-G 5717893-GTAC-G **
5465432-GTA-G 5597391-GTA-G **
13346776-C-CAA 11191100-C-CAA 13×A**
14486413-A-G 12365682-A-G Y133674 **
5067334-C-CTT 5199293-C-CTT 13×T**
10073428-A-T 10235819-A-T ***
19376186-G-A 17264306-G-A ***
19376193-A-G 17264313-A-G ***
19884944-T-A 17773064-T-A P5_Prx ***
19376202-T-A 17264322-T-A ***
13340610-G-T 11184934-G-T ***
10067585-A-G 10229976-A-G ***
20025822-A-T 17913942-A-T P5_Prx ***
20892325-G-T 18730439-G-T P4_Dst 11×A***
21068479-T-A 18906593-T-A ***
10067578-T-C 10229969-T-C ***
10067577-G-A 10229968-G-A ***
21394225-A-G 19232339-A-G ***
21474458-C-G 19312572-C-G ***
18875182-A-C 16763302-A-C ***
18135538-G-C 16023658-G-C ***
13446559-C-G 11290883-C-G ***
14162694-G-T 12041988-G-T ***
16829193-G-A 14717313-G-A ***
14738853-C-A 12626921-C-A ***
16999809-A-G 14887929-A-G ***
17164962-C-T 15053082-C-T ***
14661667-A-T 12549732-A-T ***
14514312-G-A 12402517-G-A ***
17324176-G-A 15212296-G-A ***
14100957-C-G 11980251-C-G ***
13581912-C-A 11426236-C-A ***
13979581-C-T 11858875-C-T ***
17796230-C-A 15684350-C-A ***
17797873-A-G 15685993-A-G ***
13854838-G-A 11734132-G-A ***
17858253-T-A 15746373-T-A ***
15636909-G-T 13525029-G-T ***
13732428-A-C 11576752-A-C ***
22477925-T-G 20316039-T-G BY25211 DYZ19 ***
22510246-C-T 20348360-C-T DYZ19 ***
21949334-G-T 19787448-G-T ***
5235847-T-TAC 5367806-T-TAC 11×AC***
58833754-A-T 56757117-T-A ***
58837700-T-C 56753171-A-G ***
58858793-T-A 56732078-A-T ***
58890933-T-C 56699938-A-G ***
58890935-C-A 56699936-G-T ***
58893740-A-G 56697131-T-C ***
58893796-A-G 56697075-T-C ***
58893797-T-C 56697074-A-G ***
58972695-G-C 56826548-G-C ***
59015758-A-C 56869611-A-C ***
4826400-T-TTATATA 4958359-T-TTATATA 22×TA***
6440991-TAAAA-T 6572950-TAAAA-T 19×A***
28397171-T-A 26251024-T-A P1_gr2 ***
8644324-CAAAAAAAAA-C 8776283-CAAAAAAAAA-C 32×A***
13194676-AAGC-GAGT 11039000-AAGC-GAGT ***
13270288-A-ATTTT 11114612-A-ATTTT 10×T***
13452374-TTC-CTG 11296698-TTC-CTG ***
13661295-G-GGAATA 11505619-G-GGAATA ***
13950947-CTTTTTT-C 11830241-CTTTTTT-C 23×T***
16601600-CA-C 14489720-CA-C 31×A***
18329043-CT-C 16217163-CT-C P6_Prx 17×T***
22366298-CAT-GAG 20204412-CAT-GAG DYZ19 ***
27791977-TCTG-GCTT 25645830-TCTG-GCTT P1_Y2 ***
28577939-TACACACATTATAC-T 26431792-TACACACATTATAC-T ***
58978641-CCGCA-GTGCG 56832494-CCGCA-GTGCG ***
28786390-G-A 26640243-G-A ***
28353217-C-T 26207070-C-T P1_gr2 ***
22348224-A-T 20186338-A-T DYZ19 ***
24170059-C-A 22023912-C-A P3_b1 ***
22349313-C-A 20187427-C-A DYZ19 ***
22424018-G-T 20262132-G-T DYZ19 ***
22479822-T-C 20317936-T-C DYZ19 ***
22490114-G-T 20328228-G-T DYZ19 ***
22503192-T-A 20341306-T-A DYZ19 ***
22530873-A-G 20368987-A-G ***
22757475-A-G 20595589-A-G ***
23004520-G-A 20842634-G-A ***
23048447-C-T 20886561-C-T ***
23104228-C-T 20942342-C-T ***
23290684-A-C 21128798-A-C ***
24182138-C-G 22035991-C-G P3_b1 ***
28120823-C-T 25974676-C-T P1_b4 ***
24278333-A-G 22132186-A-G P3_b1 ***
24895624-G-T 22749477-G-T g1 ***
24928360-C-A 22782213-C-A g1 ***
25004912-A-G 22858765-A-G g1 ***
25095360-T-A 22949213-T-A g1 ***
25606787-G-A 23460640-G-A P1_gr1 ***
26024375-C-A 23878228-C-A P1_Y1 ***
26455400-T-C 24309253-T-C P1_Y1 ***
26794640-T-C 24648493-T-C P1_g2 ***
27417945-G-A 25271798-G-A P1_g3 ***
27453874-C-T 25307727-C-T P1_Y2 ***
27873379-G-C 25727232-G-C P1_Y2 ***
10067567-A-T 10229958-A-T ***
7345392-C-T 7477351-C-T ***
9916745-A-G 10079136-A-G ***
13661294-T-TGGAAG 11505618-T-TGGAAG ***
59020363-G-A 56874216-G-A ***
59021219-T-G 56875072-T-G ***
58884875-C-A 56705996-G-T ***
58884897-T-C 56705974-A-G ***
58893627-A-G 56697244-T-C ***
9977384-C-T 10139775-C-T ***
25160616-C-T 23014469-C-T BY18102 g1 ***
25207898-T-A 23061751-T-A P2_r1 ***
22355095-T-C 20193209-T-C DYZ19 ***
58973695-TTTCCAT-ATGCGAG 56827548-TTTCCAT-ATGCGAG ***
5354713-CATAT-C 5486672-CATAT-C 16×AT***
4763450-C-A 4895409-C-A ***
59011965-G-A 56865818-G-A ***
8901076-CATAT-C 9033035-CATAT-C 15×AT***
15037752-A-AAC 12925840-A-AAC ***
13141868-T-A 10631354-T-A ***
13730459-TCATC-GCATG 11574783-TCATC-GCATG ***
28786378-C-T 26640231-C-T FGC50529 5×GGAAT***
58842951-A-G 56747920-T-C ***
58843019-C-A 56747852-G-T ***
3822962-G-GATATAT 3954921-G-GATATAT 26×AT***
5937240-CTC-ATA 6069199-CTC-ATA ***
8407603-G-GT 8539562-G-GT ***
13141035-T-A 10630521-T-A ***
59012923-A-G 56866776-A-G ***
59011960-T-C 56865813-T-C ***
6359095-CAA-C 6491054-CAA-C 30×A***
25207876-T-A 23061729-T-A P2_r1 ***
13446577-T-C 11290901-T-C ***
22477922-C-A 20316036-C-A BY25210 DYZ19 ***
22477926-T-G 20316040-T-G BY25212 DYZ19 ***
25207880-T-A 23061733-T-A P2_r1 ***
14491321-T-A 12379518-A-. ***
13340609-A-G 11184933-A-G ***
13214289-A-ATCT 11058613-A-ATCT 19×T***
19411914-A-AAAG 17300034-A-AAAG 14×AAAG***
58890926-G-C 56699945-C-G ***
22511237-T-A 20349351-T-A DYZ19 ***
27232111-TTTTCTTTCTTTCTTTC-T 25085964-TTTTCTTTCTTTCTTTC-T P1_g3 18×TTTC***
22484128-T-G 20322242-T-G DYZ19 ***
22508036-G-A 20346150-G-A DYZ19 ***
58869182-G-A 56721689-C-T ***
9216148-A-G 9378539-A-G ***
25200991-AAAGA-GAAGG 23054844-AAAGA-GAAGG g1 ***
14456501-C-A 12335774-C-A 15×A***
21823564-C-G 19661678-C-G 12×G***
59021218-C-T 56875071-C-T ***
25207901-G-A 23061754-G-A P2_r1 ***
14191885-G-A 12071179-G-A ***
22355000-C-T 20193114-C-T DYZ19 ***
22355002-T-C 20193116-T-C DYZ19 ***
9216148-A-AG 9378539-A-AG ***
13452356-CCAT-GTAC 11296680-CCAT-GTAC ***
28786378-CGG-TGA 26640231-CGG-TGA 5×GGAAT***
9852999-A-G 10015390-A-G ***
6819213-G-T 6951172-G-T ***
5048566-T-C 5180525-T-C ***
5193893-G-A 5325852-G-A ***
5427937-T-C 5559896-T-C ***
5810974-C-A 5942933-C-A ***
5900371-A-G 6032330-A-G ***
6017943-C-A 6149902-C-A ***
6100712-G-A 6232671-G-A ***
6557865-A-C 6689824-A-C ***
6642366-C-A 6774325-C-A ***
6747203-C-A 6879162-C-A ***
6819163-G-T 6951122-G-T ***
7016147-C-A 7148106-C-A 16×A***
4228360-C-A 4360319-C-A ***
7117823-C-T 7249782-C-T ***
7175030-G-T 7306989-G-T ***
7313481-C-T 7445440-C-T ***
8333480-T-TTTCTTCTTCTTC 8465439-T-TTTCTTCTTCTTC 31×TTC***
7541457-C-A 7673416-C-A ***
7895883-T-C 8027842-T-C ***
8344283-A-G 8476242-A-G ***
8408628-G-T 8540587-G-T ***
9487464-A-G 9649855-A-G ***
9558575-C-T 9720966-C-T IR3_Prx ***
9654217-C-T 9816608-C-T IR3_Prx ***
4620350-G-T 4752309-G-T ***
4192662-A-C 4324621-A-C ***
13465219-C-T 11309543-C-T ***
13194611-C-A 11038935-C-A ***
13446484-TG-CA 11290808-TG-CA ***
13142903-C-T 10632389-C-T ***
13142920-ACACAATTCCT-A 10632406-ACACAATTCCT-A ***
59020166-ACA-GCG 56874019-ACA-GCG ***
3786768-T-G 3918727-T-G ***
58891018-T-C 56699853-A-G ***
58891025-C-G 56699846-G-C ***
24771118-G-T 22624971-G-T P3_b2 ***
14819059-GTTTGT-G 12707126-GTTTGT-G ***
22484109-TC-T 20322223-TC-T DYZ19 ***
28814983-GGG-TGA 26668836-GGG-TGA ***
15263359-A-AATTTAG 13151449-A-AATTTAG ***
2866153-C-T 2998112-C-T ***
20025480-TCT-CCC 17913600-TCT-CCC P5_Prx ***
28356711-G-A 26210564-G-A P1_gr2 ***
25207907-G-A 23061760-G-A P2_r1 ***
25207903-C-A 23061756-C-A P2_r1 ***
21402181-CTTTTTT-C 19240295-CTTTTTT-C 34×T***
13194631-C-A 11038955-C-A ***
7532276-GTATATATATATATA-G 7664235-GTATATATATATATA-G 28×TA***
14774253-CTTTTTTT-C 12662322-CTTTTTTT-C 28×T***
58972697-T-G 56826550-T-G ***
14530877-T-C 12419078-T-C FT50219 9×AC***
58890885-C-T 56699986-G-A ***
59012987-C-G 56866840-C-G ***
59007975-AA-G 56861828-AA-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B4NFE1538769394666938389349
Used in age calculations1538769394666938389349
Counts of SNPs74
Variant counts last updated 2019-09-10 00:05:49.



Big Tree Main Page