Cooper
BigY2: 206663MDKA Birth: United States > New York
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 206663 |
---|---|---|---|---|---|---|---|---|
13695088-A-G | 11539412-A-G | A* | ||||||
19846787-A-G | 17734907-A-G | P5_Prx | A* | |||||
6140205-A-G | 6272164-A-G | BY59217 | IR3_Dst | + | ||||
7336664-A-G | 7468623-A-G | BY64642 | Y | Y | + | |||
14652714-A-G | 12540779-A-G | BY96989 | Y | Y | + | |||
16246338-C-T | 14134458-C-T | BY106298 | Y | Y | + | |||
16301784-T-C | 14189904-T-C | BY106782 | Y | Y | + | |||
17159327-G-C | 15047447-G-C | BY112737 | Y | Y | + | |||
21413747-C-A | 19251861-C-A | BY24297 | Y | Y | + | |||
21604773-C-A | 19442887-C-A | BY134103 | Y | Y | + | |||
22270894-C-A | 20109008-C-A | FT454210 | DYZ19 | + | ||||
9852970-G-A | 10015361-G-A | Y | Y | * | ||||
9852974-G-A | 10015365-G-A | Y | Y | * | ||||
26100572-G-A | 23954425-G-A | P1_Y1 | ** | |||||
25709386-GT-G | 23563239-GT-G | P1_b3 | 31×T | ** | ||||
8288850-G-A | 8420809-G-A | ** | ||||||
8902011-G-T | 9033970-G-T | ** | ||||||
15655326-C-A | 13543446-C-A | M3986 | ** | |||||
8288839-G-A | 8420798-G-A | ** | ||||||
20389089-A-T | 18227203-A-T | P5_Dst | ** | |||||
27461990-G-T | 25315843-G-T | P1_Y2 | ** | |||||
25246425-T-C | 23100278-T-C | P2_r1 | ** | |||||
13460466-G-A | 11304790-G-A | ** | ||||||
25246421-T-C | 23100274-T-C | P2_r1 | ** | |||||
19745023-G-T | 17633143-G-T | P5_Prx | ** | |||||
21241758-A-T | 19079872-A-T | 14×T | ** | |||||
59022603-AAAC-A | 56876456-AAAC-A | ** | ||||||
9429480-T-A | 9591871-T-A | 18×A | ** | |||||
16598676-G-A | 14486796-G-A | ** | ||||||
58854648-G-C | 56736223-C-G | ** | ||||||
10877770-C-T | ** | |||||||
10661294-CTTCAT-C | ** | |||||||
10927893-G-T | ** | |||||||
18756403-C-A | 16644523-C-A | ** | ||||||
10763332-TTTCC-A | ** | |||||||
15823716-AT-A | 13711836-AT-A | 9×T | ** | |||||
10840784-C-A | ** | |||||||
17300713-G-A | 15188833-G-A | ** | ||||||
23425395-C-CA | 21263509-C-CA | ** | ||||||
18297909-A-T | 16186029-A-T | P6_Prx | ** | |||||
10757989-A-ATAGTC | ** | |||||||
10958763-C-T | ** | |||||||
4134018-C-A | 4265977-C-A | ** | ||||||
14546772-C-A | 12434973-C-A | ** | ||||||
10958797-TTCCCA-T | ** | |||||||
10958833-T-C | ** | |||||||
10958842-A-G | ** | |||||||
25246585-A-T | 23100438-A-T | P2_r1 | ** | |||||
19775345-A-T | 17663465-A-T | P5_Prx | ** | |||||
10661345-T-C | ** | |||||||
19927002-A-C | 17815122-A-C | P5_Prx | ** | |||||
7414264-C-A | 7546223-C-A | ** | ||||||
16598703-A-G | 14486823-A-G | ** | ||||||
10958788-T-A | ** | |||||||
19272166-C-T | 17160286-C-T | ** | ||||||
25995485-C-T | 23849338-C-T | P1_Y1 | ** | |||||
15653350-C-A | 13541470-C-A | ** | ||||||
6682225-C-A | 6814184-C-A | ** | ||||||
19235708-C-A | 17123828-C-A | ** | ||||||
11001526-C-A | ** | |||||||
23825100-C-T | 21663214-C-T | ** | ||||||
17716835-C-A | 15604955-C-A | ** | ||||||
14065526-C-A | 11944820-C-A | ** | ||||||
10661304-T-C | ** | |||||||
10661309-A-C | ** | |||||||
10763120-T-A | ** | |||||||
10763123-C-G | ** | |||||||
10983937-C-T | ** | |||||||
15475320-C-A | 13363440-C-A | ** | ||||||
20242491-G-T | 18080605-G-T | P5_Dst | ** | |||||
13460453-A-T | 11304777-A-T | ** | ||||||
4957742-G-T | 5089701-G-T | ** | ||||||
10672228-C-G | ** | |||||||
10672231-T-C | ** | |||||||
10672240-T-A | ** | |||||||
7211296-C-A | 7343255-C-A | ** | ||||||
56842238-C-A | ** | |||||||
56842252-T-A | ** | |||||||
11001563-C-G | ** | |||||||
19293757-C-G | 17181877-C-G | ** | ||||||
4065968-C-A | 4197927-C-A | ** | ||||||
14195237-C-A | 12074531-C-A | ** | ||||||
16701901-G-T | 14590021-G-T | ** | ||||||
25709436-G-T | 23563289-G-T | P1_b3 | ** | |||||
18035703-A-T | 15923823-A-T | ** | ||||||
10826923-C-A | ** | |||||||
6944971-AG-A | 7076930-AG-A | ** | ||||||
22357283-T-G | 20195397-T-G | DYZ19 | ** | |||||
26314907-C-A | 24168760-C-A | P1_Y1 | ** | |||||
8124968-G-A | 8256927-G-A | ** | ||||||
10683506-GTTCCA-G | ** | |||||||
10826893-C-CCATTA | ** | |||||||
13935609-C-A | 11814903-C-A | ** | ||||||
17300700-G-A | 15188820-G-A | ** | ||||||
21919388-A-T | 19757502-A-T | ** | ||||||
7238285-A-G | 7370244-A-G | ** | ||||||
18309163-T-C | 16197283-T-C | P6_Prx | ** | |||||
24017409-T-TG | 21871262-T-TG | ** | ||||||
16336922-A-G | 14225042-A-G | ** | ||||||
10684224-C-A | ** | |||||||
10652642-T-C | ** | |||||||
10892252-A-C | ** | |||||||
22703580-T-G | 20541694-T-G | ** | ||||||
7221773-C-A | 7353732-C-A | ** | ||||||
7156961-T-A | 7288920-T-A | ** | ||||||
28497055-C-A | 26350908-C-A | ** | ||||||
13621650-C-A | 11465974-C-A | ** | ||||||
23881908-T-A | 21720022-T-A | ** | ||||||
23825105-T-C | 21663219-T-C | ** | ||||||
16336931-C-T | 14225051-C-T | ** | ||||||
18819261-C-A | 16707381-C-A | ** | ||||||
17622739-C-A | 15510859-C-A | ** | ||||||
16336939-A-T | 14225059-A-T | ** | ||||||
16558532-GAAA-G | 14446652-GAAA-G | 14×A | ** | |||||
8776662-C-A | 8908621-C-A | ** | ||||||
2762066-A-G | 2894025-A-G | ** | ||||||
2817045-A-C | 2949004-A-C | ** | ||||||
2885687-C-G | 3017646-C-G | ** | ||||||
2975609-C-A | 3107568-C-A | ** | ||||||
2981372-G-T | 3113331-G-T | ** | ||||||
3060044-T-G | 3192003-T-G | ** | ||||||
3092551-C-A | 3224510-C-A | ** | ||||||
3109710-C-A | 3241669-C-A | ** | ||||||
3151709-G-T | 3283668-G-T | ** | ||||||
3165277-G-T | 3297236-G-T | ** | ||||||
3244342-C-T | 3376301-C-T | ** | ||||||
3390341-C-T | 3522300-C-T | ** | ||||||
3620908-C-A | 3752867-C-A | ** | ||||||
3621380-TA-T | 3753339-TA-T | ** | ||||||
3697077-A-C | 3829036-A-C | ** | ||||||
3774595-CAATAAATGG-C | 3906554-CAATAAATGG-C | ** | ||||||
3818174-C-A | 3950133-C-A | FT85706 | ** | |||||
3833466-T-G | 3965425-T-G | ** | ||||||
3965254-C-A | 4097213-C-A | ** | ||||||
3990195-G-A | 4122154-G-A | ** | ||||||
4018328-G-A | 4150287-G-A | ** | ||||||
4072047-C-G | 4204006-C-G | FT38726 | ** | |||||
4079324-T-C | 4211283-T-C | FTA54431 | ** | |||||
4178937-G-A | 4310896-G-A | ** | ||||||
4213333-C-A | 4345292-C-A | ** | ||||||
4223344-T-C | 4355303-T-C | ** | ||||||
4256448-G-T | 4388407-G-T | ** | ||||||
4321106-T-G | 4453065-T-G | ** | ||||||
4329094-G-T | 4461053-G-T | ** | ||||||
4375284-G-T | 4507243-G-T | ** | ||||||
4438790-C-T | 4570749-C-T | ** | ||||||
4443007-G-C | 4574966-G-C | ** | ||||||
4443025-T-C | 4574984-T-C | ** | ||||||
4443048-A-G | 4575007-A-G | ** | ||||||
4443053-A-C | 4575012-A-C | ** | ||||||
4443100-T-C | 4575059-T-C | ** | ||||||
4444147-G-T | 4576106-G-T | ** | ||||||
4470657-C-A | 4602616-C-A | ** | ||||||
4472415-C-T | 4604374-C-T | ** | ||||||
4497264-C-A | 4629223-C-A | ** | ||||||
4516090-C-A | 4648049-C-A | ** | ||||||
4530613-C-A | 4662572-C-A | ** | ||||||
4533380-T-C | 4665339-T-C | ** | ||||||
4596852-T-A | 4728811-T-A | ** | ||||||
4646368-G-T | 4778327-G-T | ** | ||||||
4687500-C-A | 4819459-C-A | ** | ||||||
4751997-G-T | 4883956-G-T | ** | ||||||
4861950-T-G | 4993909-T-G | ** | ||||||
4887708-C-A | 5019667-C-A | ** | ||||||
4887726-A-G | 5019685-A-G | ** | ||||||
4888580-C-A | 5020539-C-A | ** | ||||||
4900926-G-T | 5032885-G-T | ** | ||||||
4946347-G-A | 5078306-G-A | ** | ||||||
4951708-C-A | 5083667-C-A | ** | ||||||
4951709-A-C | 5083668-A-C | ** | ||||||
4964894-A-C | 5096853-A-C | ** | ||||||
4964900-A-G | 5096859-A-G | ** | ||||||
4969064-A-G | 5101023-A-G | ** | ||||||
4969989-A-G | 5101948-A-G | ** | ||||||
4989872-T-A | 5121831-T-A | ** | ||||||
5103118-C-A | 5235077-C-A | ** | ||||||
5103252-AT-A | 5235211-AT-A | ** | ||||||
5107845-C-A | 5239804-C-A | ** | ||||||
5177244-A-G | 5309203-A-G | ** | ||||||
5179712-G-T | 5311671-G-T | ** | ||||||
5215551-GC-G | 5347510-GC-G | ** | ||||||
5219323-A-T | 5351282-A-T | ** | ||||||
5249690-C-A | 5381649-C-A | ** | ||||||
5303645-C-A | 5435604-C-A | ** | ||||||
5309598-C-A | 5441557-C-A | ** | ||||||
5346213-C-A | 5478172-C-A | ** | ||||||
5353098-G-A | 5485057-G-A | ** | ||||||
5358453-G-T | 5490412-G-T | ** | ||||||
5361856-C-A | 5493815-C-A | ** | ||||||
5395403-T-A | 5527362-T-A | ** | ||||||
5515651-G-T | 5647610-G-T | ** | ||||||
5524051-G-A | 5656010-G-A | ** | ||||||
5524716-G-C | 5656675-G-C | ** | ||||||
5548487-G-T | 5680446-G-T | ** | ||||||
5604043-T-C | 5736002-T-C | ** | ||||||
5604140-C-T | 5736099-C-T | ** | ||||||
5632148-G-T | 5764107-G-T | ** | ||||||
5710674-C-A | 5842633-C-A | ** | ||||||
5747010-G-T | 5878969-G-T | ** | ||||||
5755205-T-C | 5887164-T-C | ** | ||||||
5810382-G-T | 5942341-G-T | ** | ||||||
5818703-A-C | 5950662-A-C | ** | ||||||
5846006-A-G | 5977965-A-G | ** | ||||||
5874220-C-A | 6006179-C-A | ** | ||||||
5874226-C-A | 6006185-C-A | ** | ||||||
5889450-A-T | 6021409-A-T | ** | ||||||
5991015-G-T | 6122974-G-T | ** | ||||||
5996592-C-A | 6128551-C-A | ** | ||||||
5999180-T-A | 6131139-T-A | ** | ||||||
6023374-G-T | 6155333-G-T | ** | ||||||
6029199-A-G | 6161158-A-G | ** | ||||||
6085397-A-C | 6217356-A-C | ** | ||||||
6105768-A-AC | 6237727-A-AC | ** | ||||||
6114939-C-T | 6246898-C-T | FGC70853 | ** | |||||
6116959-C-A | 6248918-C-A | ** | ||||||
6148727-CAAA-C | 6280686-CAAA-C | IR3_Dst | 17×A | ** | ||||
6190629-A-T | 6322588-A-T | IR3_Dst | ** | |||||
6505182-C-A | 6637141-C-A | ** | ||||||
6580016-G-T | 6711975-G-T | ** | ||||||
6642887-A-C | 6774846-A-C | ** | ||||||
6655026-C-A | 6786985-C-A | ** | ||||||
6757690-A-T | 6889649-A-T | ** | ||||||
6826795-A-G | 6958754-A-G | ** | ||||||
6882061-A-C | 7014020-A-C | ** | ||||||
6892447-T-G | 7024406-T-G | ** | ||||||
6892531-G-A | 7024490-G-A | ** | ||||||
6892532-A-T | 7024491-A-T | ** | ||||||
6920686-C-A | 7052645-C-A | ** | ||||||
6934607-A-G | 7066566-A-G | ** | ||||||
7006521-C-A | 7138480-C-A | ** | ||||||
7029872-A-G | 7161831-A-G | ** | ||||||
7031087-C-A | 7163046-C-A | FTB35277 | ** | |||||
7085438-C-A | 7217397-C-A | ** | ||||||
7180090-T-C | 7312049-T-C | ** | ||||||
7201504-C-T | 7333463-C-T | ** | ||||||
7363961-C-A | 7495920-C-A | ** | ||||||
7418416-C-A | 7550375-C-A | ** | ||||||
7423876-C-A | 7555835-C-A | ** | ||||||
7424306-C-A | 7556265-C-A | ** | ||||||
7427958-G-A | 7559917-G-A | ** | ||||||
7444154-A-T | 7576113-A-T | ** | ||||||
7621945-A-G | 7753904-A-G | ** | ||||||
7629943-C-G | 7761902-C-G | ** | ||||||
7640774-C-A | 7772733-C-A | ** | ||||||
7670771-T-A | 7802730-T-A | ** | ||||||
7670774-A-T | 7802733-A-T | ** | ||||||
7704811-G-C | 7836770-G-C | ** | ||||||
7862075-G-T | 7994034-G-T | ** | ||||||
7874126-A-G | 8006085-A-G | ** | ||||||
7874866-A-T | 8006825-A-T | ** | ||||||
7898746-C-A | 8030705-C-A | ** | ||||||
7990341-A-T | 8122300-A-T | ** | ||||||
7994233-A-G | 8126192-A-G | ** | ||||||
8043125-C-A | 8175084-C-A | ** | ||||||
8043184-A-T | 8175143-A-T | ** | ||||||
8077836-T-C | 8209795-T-C | ** | ||||||
8112618-T-C | 8244577-T-C | ** | ||||||
8279659-A-C | 8411618-A-C | ** | ||||||
8288840-G-A | 8420799-G-A | ** | ||||||
8736842-C-A | 8868801-C-A | ** | ||||||
8902012-A-G | 9033971-A-G | ** | ||||||
9025420-C-A | 9187811-C-A | ** | ||||||
9030402-G-AAGAAA | 9192793-G-AAGAAA | ** | ||||||
9034571-C-A | 9196962-C-A | ** | ||||||
9076950-G-A | 9239341-G-A | ** | ||||||
9429472-G-A | 9591863-G-A | ** | ||||||
9429475-T-G | 9591866-T-G | ** | ||||||
9900255-G-T | 10062646-G-T | ** | ||||||
9929838-G-T | 10092229-G-T | ** | ||||||
9935916-C-A | 10098307-C-A | ** | ||||||
9965501-G-T | 10127892-G-T | ** | ||||||
10006089-C-T | 10168480-C-T | ** | ||||||
10019758-T-C | 10182149-T-C | ** | ||||||
10019773-T-A | 10182164-T-A | ** | ||||||
10019779-C-G | 10182170-C-G | ** | ||||||
10024975-A-G | 10187366-A-G | ** | ||||||
10654150-C-A | ** | |||||||
10654592-T-C | ** | |||||||
10661227-C-T | ** | |||||||
10661324-T-A | ** | |||||||
10661355-T-C | ** | |||||||
10663470-C-T | ** | |||||||
10672700-T-G | ** | |||||||
10683629-C-T | ** | |||||||
10684198-T-A | ** | |||||||
10684199-C-T | ** | |||||||
10684211-T-A | ** | |||||||
10745708-C-A | ** | |||||||
10750773-T-C | ** | |||||||
10750802-T-C | ** | |||||||
10763100-C-G | ** | |||||||
10764337-T-A | ** | |||||||
10767610-C-A | ** | |||||||
10769035-C-T | ** | |||||||
10770829-C-A | ** | |||||||
10772530-C-A | ** | |||||||
10783015-C-A | ** | |||||||
10786499-C-A | ** | |||||||
10790799-C-A | ** | |||||||
10798423-C-A | ** | |||||||
10809482-G-T | ** | |||||||
10818948-T-C | ** | |||||||
10823227-A-C | ** | |||||||
10843421-C-A | ** | |||||||
10845630-C-T | ** | |||||||
10850548-T-A | ** | |||||||
10862742-C-A | ** | |||||||
10866072-C-A | ** | |||||||
10872294-T-G | ** | |||||||
10881995-C-A | ** | |||||||
10889860-C-A | ** | |||||||
10894122-A-T | ** | |||||||
10900508-T-A | ** | |||||||
10900632-T-C | ** | |||||||
10900637-A-C | ** | |||||||
10921473-C-A | ** | |||||||
10924223-C-A | ** | |||||||
10927881-T-G | ** | |||||||
10943069-A-C | ** | |||||||
10958777-A-T | ** | |||||||
10965326-C-A | ** | |||||||
10965393-C-A | ** | |||||||
10974134-C-A | ** | |||||||
10974973-C-T | ** | |||||||
10978035-C-A | ** | |||||||
10982340-C-A | ** | |||||||
10982921-C-T | ** | |||||||
10984037-C-A | ** | |||||||
10984929-C-A | ** | |||||||
10995552-C-A | ** | |||||||
10997896-C-A | ** | |||||||
10998697-G-T | ** | |||||||
11001553-C-G | ** | |||||||
11001554-C-A | ** | |||||||
11001574-A-C | ** | |||||||
11003137-C-G | ** | |||||||
11006373-C-A | ** | |||||||
11007393-T-C | ** | |||||||
11012293-C-T | ** | |||||||
11012364-A-C | ** | |||||||
11012469-A-C | ** | |||||||
11020140-C-A | ** | |||||||
11024553-C-G | ** | |||||||
11031552-A-G | ** | |||||||
11036085-C-CACTGA | ** | |||||||
13195898-G-T | 11040222-G-T | ** | ||||||
13216566-C-A | 11060890-C-A | ** | ||||||
13326096-C-A | 11170420-C-A | ** | ||||||
13326108-C-A | 11170432-C-A | ** | ||||||
13446100-T-A | 11290424-T-A | ** | ||||||
13460496-C-T | 11304820-C-T | ** | ||||||
13481989-G-T | 11326313-G-T | ** | ||||||
13491130-C-T | 11335454-C-T | ** | ||||||
13512275-A-G | 11356599-A-G | ** | ||||||
13545792-C-T | 11390116-C-T | ** | ||||||
13545797-T-A | 11390121-T-A | ** | ||||||
13545804-T-A | 11390128-T-A | ** | ||||||
13545813-T-C | 11390137-T-C | ** | ||||||
13545819-T-A | 11390143-T-A | ** | ||||||
13592489-C-G | 11436813-C-G | ** | ||||||
13592614-G-C | 11436938-G-C | ** | ||||||
13594767-G-C | 11439091-G-C | ** | ||||||
13627181-C-A | 11471505-C-A | ** | ||||||
13628610-A-G | 11472934-A-G | ** | ||||||
13628657-C-A | 11472981-C-A | ** | ||||||
13637349-C-A | 11481673-C-A | ** | ||||||
13720554-C-T | 11564878-C-T | ** | ||||||
11646231-T-G | ** | |||||||
11646233-G-T | ** | |||||||
11647165-C-A | ** | |||||||
11650640-T-A | ** | |||||||
11659374-T-A | ** | |||||||
11664015-G-A | ** | |||||||
11667116-A-T | ** | |||||||
13835173-TA-T | 11714467-TA-T | ** | ||||||
13860430-G-A | 11739724-G-A | FT156898 | ** | |||||
13896252-C-A | 11775546-C-A | ** | ||||||
13919796-T-C | 11799090-T-C | FGC66970 | ** | |||||
13919813-T-G | 11799107-T-G | ** | ||||||
13947885-T-A | 11827179-T-A | ** | ||||||
13960399-C-A | 11839693-C-A | ** | ||||||
13963978-C-T | 11843272-C-T | ** | ||||||
13963990-C-T | 11843284-C-T | ** | ||||||
13966091-G-T | 11845385-G-T | ** | ||||||
13998192-A-G | 11877486-A-G | ** | ||||||
14187002-G-A | 12066296-G-A | ** | ||||||
14273711-T-G | 12153005-T-G | ** | ||||||
14352519-C-A | 12231814-C-A | ** | ||||||
14358348-C-A | 12237643-C-A | ** | ||||||
14358387-A-G | 12237682-A-G | ** | ||||||
14366361-C-T | 12245656-C-T | ** | ||||||
14380016-C-A | 12259312-C-A | ** | ||||||
14409081-C-A | 12288378-C-A | BY95553 | ** | |||||
14463429-A-T | 12342702-A-T | ** | ||||||
14472889-G-C | 12352158-G-C | ** | ||||||
14485964-T-G | 12365233-T-G | ** | ||||||
14502566-C-A | 12390771-C-A | ** | ||||||
14506756-C-A | 12394961-C-A | ** | ||||||
14531156-A-G | 12419357-A-G | ** | ||||||
14556364-C-A | 12444565-C-A | ** | ||||||
14559313-C-A | 12447514-C-A | ** | ||||||
14565409-C-A | 12453609-C-A | ** | ||||||
14593585-A-G | 12481785-A-G | ** | ||||||
14593590-G-T | 12481790-G-T | ** | ||||||
14630422-G-A | 12518491-G-A | ** | ||||||
14661448-C-A | 12549513-C-A | ** | ||||||
14667805-G-T | 12555870-G-T | ** | ||||||
14670236-A-T | 12558302-A-T | ** | ||||||
14680424-C-A | 12568490-C-A | ** | ||||||
14688585-T-G | 12576651-T-G | ** | ||||||
14698457-T-C | 12586523-T-C | ** | ||||||
14757268-C-A | 12645337-C-A | ** | ||||||
14757839-A-C | 12645908-A-C | ** | ||||||
14761424-C-A | 12649493-C-A | ** | ||||||
14786569-T-A | 12674639-T-A | ** | ||||||
14805985-C-A | 12694056-C-A | ** | ||||||
14871195-T-A | 12759265-T-A | ** | ||||||
14981768-G-A | 12869844-G-A | ** | ||||||
14981996-G-A | 12870064-G-A | ** | ||||||
14986510-C-A | 12874578-C-A | ** | ||||||
15040991-C-A | 12929081-C-A | ** | ||||||
15044688-G-A | 12932778-G-A | ** | ||||||
15202216-T-C | 13090302-T-C | ** | ||||||
15280349-A-C | 13168448-A-C | ** | ||||||
15286954-C-T | 13175053-C-T | ** | ||||||
15321303-C-A | 13209421-C-A | ** | ||||||
15335001-A-C | 13223119-A-C | ** | ||||||
15391390-A-G | 13279510-A-G | ** | ||||||
15424313-GAAAA-G | 13312433-GAAAA-G | 14×A | ** | |||||
15658118-G-A | 13546238-G-A | ** | ||||||
15700418-C-T | 13588538-C-T | ** | ||||||
15767096-C-A | 13655216-C-A | ** | ||||||
15789100-C-A | 13677220-C-A | ** | ||||||
15789208-C-A | 13677328-C-A | ** | ||||||
15866784-C-A | 13754904-C-A | ** | ||||||
15916577-T-C | 13804697-T-C | ** | ||||||
15928677-C-A | 13816797-C-A | ** | ||||||
16031681-T-C | 13919801-T-C | ** | ||||||
16070862-G-T | 13958982-G-T | ** | ||||||
16081291-G-T | 13969411-G-T | ** | ||||||
16108702-CTT-C | 13996822-CTT-C | P8_Prx | 10×TTTCT | ** | ||||
16108706-CTTT-C | 13996826-CTTT-C | P8_Prx | ** | |||||
16244912-G-T | 14133032-G-T | ** | ||||||
16246113-G-T | 14134233-G-T | ** | ||||||
16308203-T-G | 14196323-T-G | ** | ||||||
16336932-T-C | 14225052-T-C | ** | ||||||
16354177-C-A | 14242297-C-A | ** | ||||||
16422104-C-A | 14310224-C-A | ** | ||||||
16506884-C-A | 14395004-C-A | ** | ||||||
16540140-G-T | 14428260-G-T | ** | ||||||
16545410-TCAC-T | 14433530-TCAC-T | ** | ||||||
16673443-T-G | 14561563-T-G | ** | ||||||
16783529-C-A | 14671649-C-A | Y52324 | ** | |||||
16786134-C-CAAA | 14674254-C-CAAA | 13×A | ** | |||||
16847719-T-G | 14735839-T-G | ** | ||||||
16881619-C-A | 14769739-C-A | ** | ||||||
16931137-C-A | 14819257-C-A | ** | ||||||
16938375-C-A | 14826495-C-A | ** | ||||||
16952596-C-A | 14840716-C-A | ** | ||||||
16952734-C-A | 14840854-C-A | ** | ||||||
16952762-T-G | 14840882-T-G | ** | ||||||
16987847-G-A | 14875967-G-A | ** | ||||||
17046744-T-A | 14934864-T-A | ** | ||||||
17103450-A-G | 14991570-A-G | ** | ||||||
17212315-T-A | 15100435-T-A | ** | ||||||
17217285-ATCT-A | 15105405-ATCT-A | ** | ||||||
17224414-C-G | 15112534-C-G | ** | ||||||
17263035-G-A | 15151155-G-A | ** | ||||||
17270625-C-A | 15158745-C-A | ** | ||||||
17300710-C-A | 15188830-C-A | ** | ||||||
17306661-C-A | 15194781-C-A | ** | ||||||
17315158-C-A | 15203278-C-A | ** | ||||||
17378859-C-A | 15266979-C-A | ** | ||||||
17434031-T-C | 15322151-T-C | ** | ||||||
17461945-A-G | 15350065-A-G | ** | ||||||
17461966-C-A | 15350086-C-A | ** | ||||||
17482835-C-T | 15370955-C-T | ** | ||||||
17545007-C-A | 15433127-C-A | ** | ||||||
17568449-C-A | 15456569-C-A | ** | ||||||
17601015-G-T | 15489135-G-T | ** | ||||||
17715454-C-A | 15603574-C-A | ** | ||||||
17779545-T-C | 15667665-T-C | ** | ||||||
17838714-T-G | 15726834-T-G | ** | ||||||
17840394-T-G | 15728514-T-G | ** | ||||||
17871684-C-A | 15759804-C-A | ** | ||||||
17963517-C-A | 15851637-C-A | ** | ||||||
18071872-A-C | 15959992-A-C | ** | ||||||
18185157-A-G | 16073277-A-G | ** | ||||||
18188006-G-T | 16076126-G-T | ** | ||||||
18206627-C-A | 16094747-C-A | ** | ||||||
18297912-C-A | 16186032-C-A | P6_Prx | ** | |||||
18297921-A-C | 16186041-A-C | P6_Prx | ** | |||||
18384336-CA-C | 16272456-CA-C | P6_Gap | ** | |||||
18389170-T-C | 16277290-T-C | P6_Gap | ** | |||||
18630663-T-C | 16518783-T-C | ** | ||||||
18853503-C-A | 16741623-C-A | ** | ||||||
18859145-GC-G | 16747265-GC-G | ** | ||||||
18950674-A-T | 16838794-A-T | ** | ||||||
18964020-T-A | 16852140-T-A | ** | ||||||
19023315-A-T | 16911435-A-T | ** | ||||||
19043216-A-C | 16931336-A-C | ** | ||||||
19112431-C-T | 17000551-C-T | FT338487 | ** | |||||
19125693-TCAAA-T | 17013813-TCAAA-T | ** | ||||||
19206740-GTAAAAAAA-G | 17094860-GTAAAAAAA-G | ** | ||||||
19235656-T-C | 17123776-T-C | ** | ||||||
19293765-CGTCTCAA-C | 17181885-CGTCTCAA-C | ** | ||||||
19304234-C-A | 17192354-C-A | ** | ||||||
19330355-A-G | 17218475-A-G | ** | ||||||
19330558-A-G | 17218678-A-G | ** | ||||||
19330606-A-T | 17218726-A-T | ** | ||||||
19376266-C-A | 17264386-C-A | ** | ||||||
19415635-C-A | 17303755-C-A | ** | ||||||
19423759-G-A | 17311879-G-A | ** | ||||||
19448339-G-A | 17336459-G-A | ** | ||||||
19448341-C-A | 17336461-C-A | ** | ||||||
19462020-T-C | 17350140-T-C | ** | ||||||
19512655-T-C | 17400775-T-C | ** | ||||||
19558978-C-A | 17447098-C-A | ** | ||||||
19737319-T-C | 17625439-T-C | P5_Prx | ** | |||||
19739347-A-AACC | 17627467-A-AACC | P5_Prx | ** | |||||
19817558-A-C | 17705678-A-C | P5_Prx | ** | |||||
19839147-T-C | 17727267-T-C | P5_Prx | ** | |||||
19895344-T-G | 17783464-T-G | P5_Prx | ** | |||||
20389108-T-TC | 18227222-T-TC | P5_Dst | ** | |||||
20557651-G-T | 18395765-G-T | P5_Dst | ** | |||||
20569388-A-G | 18407502-A-G | P5_Dst | ** | |||||
20673824-T-G | 18511938-T-G | P4_Prx | ** | |||||
20769020-A-T | 18607134-A-T | P4_Prx | ** | |||||
20959117-C-A | 18797231-C-A | P4_Dst | ** | |||||
21115715-A-T | 18953829-A-T | ** | ||||||
21162274-C-A | 19000388-C-A | ** | ||||||
21201834-C-A | 19039948-C-A | ** | ||||||
21234877-C-A | 19072991-C-A | ** | ||||||
21242753-T-A | 19080867-T-A | ** | ||||||
21316848-T-C | 19154962-T-C | ** | ||||||
21513797-C-A | 19351911-C-A | ** | ||||||
21582350-G-T | 19420464-G-T | ** | ||||||
21584595-C-T | 19422709-C-T | ** | ||||||
21691971-C-A | 19530085-C-A | ** | ||||||
21821476-C-A | 19659590-C-A | ** | ||||||
21821496-T-G | 19659610-T-G | ** | ||||||
21885829-T-G | 19723943-T-G | ** | ||||||
22077105-A-T | 19915219-A-T | ** | ||||||
22247361-G-T | 20085475-G-T | DYZ19 | ** | |||||
22357278-A-T | 20195392-A-T | DYZ19 | ** | |||||
22357352-T-A | 20195466-T-A | DYZ19 | ** | |||||
22537246-G-A | 20375360-G-A | ** | ||||||
22563000-C-T | 20401114-C-T | ** | ||||||
22598761-T-A | 20436875-T-A | ** | ||||||
22660760-C-A | 20498874-C-A | ** | ||||||
22703593-CTCAA-C | 20541707-CTCAA-C | ** | ||||||
22857401-C-A | 20695515-C-A | ** | ||||||
22857734-TCCTCAACC-T | 20695848-TCCTCAACC-T | ** | ||||||
22885007-G-C | 20723121-G-C | ** | ||||||
22963727-G-T | 20801841-G-T | ** | ||||||
22972837-T-A | 20810951-T-A | ** | ||||||
23049738-A-G | 20887852-A-G | ** | ||||||
23052555-T-G | 20890669-T-G | ** | ||||||
23061238-A-G | 20899352-A-G | ** | ||||||
23065112-A-C | 20903226-A-C | ** | ||||||
23128554-GA-G | 20966668-GA-G | 9×A | ** | |||||
23264050-T-C | 21102164-T-C | ** | ||||||
23289815-T-C | 21127929-T-C | ** | ||||||
23305976-T-A | 21144090-T-A | ** | ||||||
23433526-T-C | 21271640-T-C | ** | ||||||
23475534-C-A | 21313648-C-A | ** | ||||||
23512249-T-G | 21350363-T-G | ** | ||||||
23818374-A-T | 21656488-A-T | ** | ||||||
23876184-C-T | 21714298-C-T | ** | ||||||
21755087-C-A | ** | |||||||
23953032-T-C | 21806885-T-C | ** | ||||||
23954174-C-A | 21808027-C-A | ** | ||||||
24402112-C-A | 22255965-C-A | ** | ||||||
24518585-G-T | 22372438-G-T | ** | ||||||
24751230-A-C | 22605083-A-C | P3_b2 | ** | |||||
24870200-G-T | 22724053-G-T | IR1_R | ** | |||||
25246442-T-C | 23100295-T-C | P2_r1 | ** | |||||
25647080-C-A | 23500933-C-A | P1_b3 | ** | |||||
25647088-A-T | 23500941-A-T | P1_b3 | ** | |||||
25647089-A-T | 23500942-A-T | P1_b3 | ** | |||||
25709428-C-T | 23563281-C-T | P1_b3 | ** | |||||
25709433-T-C | 23563286-T-C | P1_b3 | ** | |||||
25935003-T-C | 23788856-T-C | P1_Y1 | ** | |||||
25963902-G-T | 23817755-G-T | P1_Y1 | ** | |||||
25970543-T-G | 23824396-T-G | P1_Y1 | ** | |||||
26120139-T-G | 23973992-T-G | P1_Y1 | ** | |||||
26142647-A-T | 23996500-A-T | P1_Y1 | ** | |||||
26153705-A-G | 24007558-A-G | P1_Y1 | ** | |||||
26249387-A-G | 24103240-A-G | P1_Y1 | ** | |||||
26563903-A-G | 24417756-A-G | P1_g2 | ** | |||||
26908764-C-A | 24762617-C-A | P1_r3 | ** | |||||
27423856-C-G | 25277709-C-G | P1_g3 | ** | |||||
27585938-AG-T | 25439791-AG-T | P1_Y2 | ** | |||||
27963548-C-CTT | 25817401-C-CTT | P1_Y2 | ** | |||||
27963576-G-T | 25817429-G-T | P1_Y2 | ** | |||||
28505349-C-A | 26359202-C-A | ** | ||||||
28514414-C-A | 26368267-C-A | ** | ||||||
28514713-T-A | 26368566-T-A | ** | ||||||
28520667-A-G | 26374520-A-G | ** | ||||||
28569937-G-A | 26423790-G-A | ** | ||||||
28579075-G-T | 26432928-G-T | ** | ||||||
28607764-C-A | 26461617-C-A | ** | ||||||
28614811-G-A | 26468664-G-A | ** | ||||||
28656880-C-A | 26510733-C-A | ** | ||||||
28660852-T-A | 26514705-T-A | ** | ||||||
28674686-C-T | 26528539-C-T | ** | ||||||
28682134-C-A | 26535987-C-A | ** | ||||||
28728390-T-A | 26582243-T-A | ** | ||||||
28741030-G-T | 26594883-G-T | ** | ||||||
28772097-C-A | 26625950-C-A | ** | ||||||
28796819-T-A | 26650672-T-A | ** | ||||||
28798728-C-A | 26652581-C-A | ** | ||||||
56705685-G-T | ** | |||||||
56736265-A-G | ** | |||||||
56841666-G-C | ** | |||||||
56845278-G-T | ** | |||||||
56858021-C-A | ** | |||||||
56862003-C-T | ** | |||||||
56869878-G-T | 9×A | ** | ||||||
24939-G-T | ** | |||||||
27498-A-C | ** | |||||||
8470541-T-C | 8602500-T-C | *** | ||||||
16666079-A-T | 14554199-A-T | 25×T | *** | |||||
19407605-TC-T | 17295725-TC-T | *** | ||||||
6359666-C-T | 6491625-C-T | *** | ||||||
8589494-G-GA | 8721453-G-GA | 12×A | *** | |||||
58977835-C-T | 56831688-C-T | *** | ||||||
2790390-C-A | 2922349-C-A | *** | ||||||
15980746-T-A | 13868866-T-A | *** | ||||||
10763269-T-C | *** | |||||||
10763319-T-C | *** | |||||||
10764576-A-G | *** | |||||||
10764580-C-A | *** | |||||||
10825264-C-T | *** | |||||||
2750859-T-A | 2882818-T-A | *** | ||||||
8078650-G-T | 8210609-G-T | *** | ||||||
58976269-G-A | 56830122-G-A | *** | ||||||
13708978-T-G | 11553302-T-G | *** | ||||||
56835111-C-A | *** | |||||||
56844241-G-T | *** | |||||||
18738134-A-T | 16626254-A-T | *** | ||||||
13218965-TCA-T | 11063289-TCA-T | *** | ||||||
18172887-C-A | 16061007-C-A | *** | ||||||
23981934-CTT-C,CT | 21835787-CTT-C,CT | 14×T | *** | |||||
2773691-TAAAAA-T | 2905650-TAAAAA-T | 19×A | *** | |||||
3151809-G-T | 3283768-G-T | *** | ||||||
7174399-G-T | 7306358-G-T | *** | ||||||
7359727-T-A | 7491686-T-A | 8×TA | *** | |||||
7364367-G-GTT | 7496326-G-GTT | 27×T | *** | |||||
7723881-AGAAAAGAAATGAAAC-A | 7855840-AGAAAAGAAATGAAAC-A | *** | ||||||
7759270-CCT-C | 7891229-CCT-C | *** | ||||||
10651932-C-A | *** | |||||||
10664797-T-TG | *** | |||||||
10664798-TC-T | *** | |||||||
10669169-A-G | *** | |||||||
10694008-C-T | *** | |||||||
10694010-C-CCATTCCATTCTATTCCACTT | *** | |||||||
10769012-C-T | *** | |||||||
10772606-C-A | *** | |||||||
10776072-CTCAAT-C,CTCCAT | *** | |||||||
10779684-C-A | *** | |||||||
10817373-C-G | *** | |||||||
10825234-C-T | *** | |||||||
10825270-C-G | *** | |||||||
10825275-C-CAATCGAGTTG | *** | |||||||
10825305-C-T | *** | |||||||
10926673-C-A | *** | |||||||
10926700-TTCCATTCC-T | *** | |||||||
10961394-T-C | *** | |||||||
13236471-C-T | 11080795-C-T | *** | ||||||
13469395-C-T | 11313719-C-T | *** | ||||||
14761240-G-T | 12649309-G-T | *** | ||||||
15375829-C-A | 13263949-C-A | *** | ||||||
15452611-C-A | 13340731-C-A | *** | ||||||
15557124-AATATATAT-A,AAT | 13445244-AATATATAT-A,AAT | 19×AT | *** | |||||
16309520-C-A | 14197640-C-A | *** | ||||||
16921209-C-A | 14809329-C-A | *** | ||||||
17547546-C-A | 15435666-C-A | *** | ||||||
21775339-T-G | 19613453-T-G | *** | ||||||
21839957-A-T | 19678071-A-T | *** | ||||||
21905310-T-A | 19743424-T-A | *** | ||||||
21912006-C-A | 19750120-C-A | *** | ||||||
22542511-C-A | 20380625-C-A | *** | ||||||
22564871-C-A | 20402985-C-A | *** | ||||||
23825219-C-A | 21663333-C-A | *** | ||||||
28813312-G-A | 26667165-G-A | BY152121 | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.