Youngs

BigY2: 133827

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > Z2185 > BY44331 > A287 > BY62794

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
133827
19623949-A-G 17512069-A-G P5_Prx A*
19830047-C-A 17718167-C-A P5_Prx A*
19888941-C-T 17777061-C-T P5_Prx A*
22252725-A-T 20090839-A-T DYZ19 A*
22254357-A-T 20092471-A-T DYZ19 A*
22305076-A-T 20143190-A-T DYZ19 A*
22313867-G-A 20151981-G-A BY21014 DYZ19 A*
28811168-G-C 26665021-G-C A*
7035274-G-T 7167233-G-T BY62945 YY+
2659770-T-C 2791729-T-C BY55705 YY+
2829926-A-C 2961885-A-C BY56708 YY+
7055046-C-T 7187005-C-T BY63070 YY+
7681008-C-G 7812967-C-G FGC29661 YY+
8050417-C-A 8182376-C-A BY69615 YY+
8051297-G-T 8183256-G-T PR4813 YY+
8081406-A-T 8213365-A-T BY69784 YY+
8999550-C-G 9161941-C-G BY77170 Y+
14197309-C-T 12076603-C-T BY93749 YY+
14408799-T-G 12288097-T-G BY95550 YY+
15064380-A-G 12952472-A-G BY99519 YY+
15438283-G-GA 13326403-G-GA 8×A+
15817659-T-C 13705779-T-C BY49195 YY+
15822835-G-A 13710955-G-A BY104354 YY+
16223774-G-T 14111894-G-T BY106085 YY+
16459301-G-A 14347421-G-A BY107982 YY+
17090217-G-A 14978337-G-A BY112217 YY+
17566190-A-T 15454310-A-T BY115766 YY+
17949873-T-C 15837993-T-C BY118664 YY+
18028915-C-T 15917035-C-T BY211738 Y+
18070191-C-A 15958311-C-A Y21747 YY15×T+
18105485-T-A 15993605-T-A BY120061 YY+
18662991-G-A 16551111-G-A Y73822 YY+
19067753-A-G 16955873-A-G BY125972 YY+
20129497-A-C 18017617-A-C BY212122 P5_Dst +
21192935-C-T 19031049-C-T BY131014 YY+
21876600-G-C 19714714-G-C BY136116 YY+
21876763-A-C 19714877-A-C BY136118 YY+
22203212-C-T 20041326-C-T BY138434 YY+
22458239-T-A 20296353-T-A BY220078 DYZ19 +
22470730-T-A 20308844-T-A FT459155 DYZ19 +
22474240-T-A 20312354-T-A BY223110 DYZ19 +
22484575-G-C 20322689-G-C FT460454 DYZ19 +
22506577-G-T 20344691-G-T BY44065 DYZ19 +
22861719-A-C 20699833-A-C BY141310 YY+
22903081-C-T 20741195-C-T BY141564 YY+
23486241-A-G 21324355-A-G BY145664 YY+
26334942-C-G 24188795-C-G BY53468 P1_Y1 +
28428748-C-T 26282601-C-T BY227113 P1_gr2 +
7195501-CTGTG-C 7327460-CTGTG-C 17×TG*
15021237-T-TTA 12909326-T-TTA *
22302854-G-T 20140968-G-T DYZ19 *
58833950-C-T 56756921-G-A **
25990620-T-G 23844473-T-G P1_Y1 **
13859380-A-T 11738674-A-T **
19126436-C-CAAAAAA 17014556-C-CAAAAAA 25×A**
13976485-C-T 11855779-C-T **
10023819-T-C 10186210-T-C **
6403579-C-A 6535538-C-A **
27499310-C-CA 25353163-C-CA P1_Y2 30×A**
28556382-T-G 26410235-T-G **
10953615-G-T FT437999 **
10887970-T-TGTA **
10958267-G-T **
11033179-A-T **
13717918-T-A 11562242-T-A **
13256635-GTT-G 11100959-GTT-G 16×T**
14181588-G-T 12060882-G-T **
16305824-C-T 14193944-C-T **
18329043-CTTTT-C 16217163-CTTTT-C P6_Prx 17×T**
10825256-G-T **
10764511-T-C **
28545694-TAC-T 26399547-TAC-T **
10937682-T-C **
10824186-C-G **
24290819-C-A 22144672-C-A P3_t1 **
6816711-G-T 6948670-G-T **
10932639-G-T **
10872972-C-A **
10656834-T-C **
10656835-A-AT **
19979865-T-C 17867985-T-C P5_Prx **
10936244-C-T **
2699702-AAAAGAG-A 2831661-AAAAGAG-A **
3158892-C-A 3290851-C-A **
3523404-C-A 3655363-C-A **
3591241-C-A 3723200-C-A **
3831390-T-C 3963349-T-C **
3883321-A-G 4015280-A-G **
4096476-C-A 4228435-C-A **
4256925-C-A 4388884-C-A **
4326419-G-A 4458378-G-A FT129798 **
4366153-G-GTC 4498112-G-GTC **
4507077-C-A 4639036-C-A **
4624214-G-A 4756173-G-A **
4630883-G-T 4762842-G-T **
4868231-C-T 5000190-C-T **
4868289-G-T 5000248-G-T **
4993562-G-T 5125521-G-T **
4995983-GTC-G 5127942-GTC-G **
5084312-G-T 5216271-G-T **
5249156-C-A 5381115-C-A **
5678533-G-T 5810492-G-T **
5690003-C-A 5821962-C-A **
5814501-A-G 5946460-A-G **
5829763-C-A 5961722-C-A **
5851942-C-G 5983901-C-G **
6056576-G-T 6188535-G-T **
6459757-T-C 6591716-T-C **
6487751-G-T 6619710-G-T **
6513547-T-C 6645506-T-C **
6535358-C-A 6667317-C-A **
6699534-C-A 6831493-C-A **
6765991-A-C 6897950-A-C **
6826663-A-T 6958622-A-T **
6934820-G-A 7066779-G-A **
7050266-T-G 7182225-T-G **
7109453-C-A 7241412-C-A **
7135441-A-G 7267400-A-G **
7156802-G-A 7288761-G-A **
7348664-G-A 7480623-G-A **
7783403-C-A 7915362-C-A **
7783494-A-C 7915453-A-C **
8273781-ATTATT-A 8405740-ATTATT-A **
8344221-G-T 8476180-G-T **
8678621-A-G 8810580-A-G **
8911585-G-T 9043544-G-T **
9125505-G-T **
9172699-G-A 9335090-G-A **
9601586-C-T 9763977-C-T IR3_Prx 16×T**
9887052-C-T 10049443-C-T **
10018009-T-C 10180400-T-C **
10023805-G-C 10186196-G-C **
10023805-G-GTC 10186196-G-GTC **
10648083-A-G **
10648098-A-G FT428123 **
10648102-C-T **
10648113-A-T **
10656829-T-A **
10656831-T-C **
10656845-T-C **
10663659-C-CTCCAA **
10678553-C-A **
10679146-C-A **
10683235-C-T FT428897 **
10687020-T-C **
10689021-TC-T **
10744659-C-A **
10755047-C-T FT429776 **
10757342-CT-C **
10760284-G-C **
10760290-CGAATG-T **
10760302-C-T **
10760304-A-T **
10764514-C-T **
10764540-AT-A **
10764543-C-T **
10764544-C-CGGGTTT **
10772285-C-A **
10773846-G-T **
10780834-C-A **
10787307-T-C **
10791311-C-A **
10792813-C-T **
10795305-C-A **
10797422-A-T **
10799492-A-G **
10799515-T-A **
10799518-C-TA **
10799520-CA-C **
10799530-TTCA-T **
10799561-ATTCTATTTCATTCCT-A **
10814978-C-A **
10824173-A-G **
10824178-A-T **
10824197-C-A **
10824201-C-T **
10831770-T-A **
10851949-A-T **
10851953-C-A **
10858880-C-A **
10869507-T-C **
10869511-T-A **
10869514-G-A **
10869842-C-A **
10872979-T-A **
10878043-A-T **
10884292-C-A **
10885156-CT-C **
10885193-A-T **
10895859-T-A **
10895862-A-C **
10895876-C-G **
10929750-T-G **
10932974-A-C **
10935554-TTCCAG-T **
10935631-C-T **
10936198-GTTCCATTCCT-G **
10936224-C-T **
10936247-C-CACTCA **
10936664-A-T **
10936668-A-C **
10936674-C-CT **
10936677-TG-T **
10936713-C-A **
10936721-C-T **
10937661-A-T **
10937927-C-A **
10939075-C-T **
10939171-T-G **
10943739-T-G **
10943740-T-C **
10953604-A-T **
10953617-C-T **
10953626-C-T **
10953633-A-G **
10958260-A-T **
10958262-A-C **
10958263-A-C **
10958278-A-C **
10973552-AATTTC-A **
10973562-G-T **
10974122-C-A **
10978779-ATTCCT-A **
10995751-A-T **
10995962-G-T **
10997209-G-T **
11001401-C-A **
11004715-G-A **
11013198-TATTCCATTCC-T **
11017529-C-A **
11018391-G-T **
11020156-C-G **
11025588-G-T **
11026170-A-T FT440025 **
11028027-TTCCAC-T **
11033154-A-ATTCGGGTCCT **
11033163-C-T **
11033173-C-G **
11033173-C-CAATAA **
11033209-T-A **
13198013-G-T 11042337-G-T FGC69524 **
13226402-A-T 11070726-A-T **
13226408-C-A 11070732-C-A **
13301317-C-A 11145641-C-A **
13330276-C-A 11174600-C-A **
13453741-G-A 11298065-G-A **
13573369-A-T 11417693-A-T **
13691843-C-A 11536167-C-A **
13691845-C-A 11536169-C-A **
13710373-A-T 11554697-A-T **
13720836-T-A 11565160-T-A **
13720837-G-T 11565161-G-T **
11643608-G-T FT449697 **
11652761-T-A **
11652839-G-T **
11652878-A-T **
13857155-T-A 11736449-T-A **
13976489-G-A 11855783-G-A **
14022942-C-A 11902236-C-A **
14040920-C-A 11920214-C-A **
14239303-C-A 12118597-C-A **
14239315-C-A 12118609-C-A **
14272794-C-A 12152088-C-A **
14281132-C-A 12160426-C-A FT236564 **
14398239-GATA-G 12277535-GATA-G **
14421694-C-A 12300969-C-A **
14502019-C-A 12390224-C-A **
14517308-C-T 12405509-C-T **
14518342-C-A 12406543-C-A **
14570756-ATTTTTTT-A 12458956-ATTTTTTT-A 22×T**
15355066-C-A 13243185-C-A **
15392206-T-A 13280326-T-A **
15608146-C-A 13496266-C-A **
15864082-C-A 13752202-C-A **
15975244-G-T 13863364-G-T **
16017192-C-A 13905312-C-A **
16049004-C-A 13937124-C-A **
16176618-T-A 14064738-T-A **
16245452-A-C 14133572-A-C **
16279204-A-G 14167324-A-G **
16305753-G-A 14193873-G-A **
16305771-A-AAAAC 14193891-A-AAAAC **
16577677-C-A 14465797-C-A **
16588338-C-A 14476458-C-A **
17362744-C-A 15250864-C-A **
17385472-C-A 15273592-C-A **
17440621-C-G 15328741-C-G **
17464801-G-T 15352921-G-T **
17500899-A-T 15389019-A-T **
17618342-G-T 15506462-G-T **
17644116-G-T 15532236-G-T FGC64225 **
17813545-G-A 15701665-G-A **
17934036-G-T 15822156-G-T **
18343602-C-T 16231722-C-T P6_Prx 25×T**
18530997-C-T 16419117-C-T P6_Dst **
18867339-CTTTTTTTTTT-C 16755459-CTTTTTTTTTT-C 24×T**
18902379-A-C 16790499-A-C **
18902757-T-C 16790877-T-C **
18951317-T-G 16839437-T-G **
19052339-C-A 16940459-C-A **
19122076-C-A 17010196-C-A **
19129499-C-A 17017619-C-A **
19223122-G-C 17111242-G-C **
19223128-G-C 17111248-G-C **
19272166-C-A 17160286-C-A **
19449286-G-T 17337406-G-T **
19504174-G-T 17392294-G-T **
19510326-G-T 17398446-G-T **
19552149-C-A 17440269-C-A **
19949626-G-T 17837746-G-T P5_Prx **
20101757-C-A 17989877-C-A P5_Dst **
20376642-T-C 18214756-T-C P5_Dst **
20700664-C-A 18538778-C-A P4_Prx **
20700666-T-A 18538780-T-A P4_Prx **
20774832-C-T 18612946-C-T P4_Prx **
21422190-C-A 19260304-C-A **
21427345-C-A 19265459-C-A **
21427741-C-A 19265855-C-A **
21457260-A-T 19295374-A-T **
21473739-A-T 19311853-A-T **
21477008-C-A 19315122-C-A **
21578479-G-T 19416593-G-T **
21939522-C-A 19777636-C-A **
22048522-A-G 19886636-A-G **
22199444-A-G 20037558-A-G **
22297871-T-C 20135985-T-C DYZ19 **
22303591-G-A 20141705-G-A DYZ19 **
22537136-A-T 20375250-A-T **
22587955-A-T 20426069-A-T **
22587978-C-A 20426092-C-A **
23007055-T-A 20845169-T-A **
23438972-C-A 21277086-C-A **
23521027-G-T 21359141-G-T **
23952699-T-A 21806552-T-A **
24406247-C-T 22260100-C-T **
25990617-TC-G 23844470-TC-G P1_Y1 **
26099745-C-A 23953598-C-A P1_Y1 **
26730206-AAAG-A 24584059-AAAG-A P1_g2 **
28485844-G-C 26339697-G-C **
28491976-G-T 26345829-G-T **
28515417-TC-T 26369270-TC-T **
28549264-G-T 26403117-G-T **
28633058-C-A 26486911-C-A **
28633233-C-A 26487086-C-A **
28644318-T-A 26498171-T-A **
28660675-C-A 26514528-C-A **
28688326-C-A 26542179-C-A **
28698551-A-C 26552404-A-C **
28812504-A-C 26666357-A-C **
56734794-T-C **
56850776-G-T **
31647-C-A **
9702867-AACACAC-A 9865258-AACACAC-A IR3_Prx 19×AC***
17597154-CTTTT-C 15485274-CTTTT-C 20×T***
7203398-C-A 7335357-C-A ***
8008793-C-A 8140752-C-A ***
10682476-C-G ***
10895836-C-G ***
10895840-C-G ***
10895845-C-A ***
10895850-C-T ***
13809189-A-G 11688483-A-G ***
13809202-A-T 11688496-A-T ***
13809203-GGAATA-G 11688497-GGAATA-G ***
14686074-C-A 12574140-C-A ***
15151502-CAAAAAAAAA-C 13039589-CAAAAAAAAA-C 23×A***
15619797-C-A 13507917-C-A ***
17375948-G-T 15264068-G-T ***
17465029-C-A 15353149-C-A ***
18978793-C-T 16866913-C-T ***
19479759-C-A 17367879-C-A ***
21558700-A-ATT 19396814-A-ATT 10×T***
21990529-C-A 19828643-C-A ***
22314440-T-C 20152554-T-C DYZ19 ***
22339870-T-C 20177984-T-C DYZ19 ***
22669027-G-T 20507141-G-T ***
23277771-T-A 21115885-T-A ***
23395638-C-A 21233752-C-A ***
24406062-T-G 22259915-T-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.