Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > FGC20747 > FGC20764 > ZZ57

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
254224
22456355-A-G 20294469-A-G DYZ19 A*
25984089-C-T 23837942-C-T P1_Y1 A*
19866798-C-G 17754918-C-G P5_Prx A*
22192077-G-T 20030191-G-T BY138363 YY+
16452635-C-T 14340755-C-T BY107912 YY+
3621627-G-C 3753586-G-C BY57743 +
7765646-C-T 7897605-C-T BY67461 YY+
7671947-T-A 7803906-T-A BY66719 YY+
21756742-C-T 19594856-C-T BY135224 YY+
20804006-G-T 18642120-G-T BY43587 P4_Gap +
20816738-G-C 18654852-G-C BY212560 P4_Gap +
7205165-A-G 7337124-A-G BY63875 YY+
21258441-G-T 19096555-G-T BY131505 YY+
22899324-T-C 20737438-T-C Z42616 YY+
6795633-A-G 6927592-A-G BY61352 YY+
22475166-C-A 20313280-C-A BY223298 DYZ19 +
6767374-G-C 6899333-G-C BY61181 YY+
21304257-G-A 19142371-G-A BY131905 YY+
22099903-A-G 19938017-A-G BY137615 YY+
22079559-A-G 19917673-A-G BY137479 YY+
22024596-T-C 19862710-T-C BY137149 YY+
16751321-A-G 14639441-A-G BY109809 YY+
15715172-C-T 13603292-C-T BY103531 YY+
17804173-C-A 15692293-C-A BY156712 YY+
15661095-C-T 13549215-C-T BY54751 YY+
8773695-C-A 8905654-C-A BY75802 YY+
18683260-C-T 16571380-C-T PH3912 YY+
19104865-G-T 16992985-G-T BY126282 YY+
19368186-G-A 17256306-G-A BY128529 YY+
18097058-G-T 15985178-G-T BY119990 YY+
13689717-A-G 11534041-A-G BY88602 +
13679451-G-A 11523775-G-A BY88157 +
13657642-C-T 11501966-C-T BY87285 +
8452091-G-A 8584050-G-A BY72894 YY+
8055673-T-C 8187632-T-C BY69652 YY+
14828458-C-T 12716525-C-T BY97829 YY+
17918434-C-T 15806554-C-T BY118424 YY+
8426377-GCTTCTTCTT-G,GCTT 8558336-GCTTCTTCTT-G,GCTT 22×CTT*
6953210-CACACACACACAC-C,CACACACACACACACAG 7085169-CACACACACACAC-C,CACACACACACACACAG *
22340486-C-G 20178600-C-G DYZ19 *
17547810-G-T 15435930-G-T **
17006646-C-A 14894766-C-A **
17038740-A-T 14926860-A-T **
18322899-T-G 16211019-T-G P6_Prx **
18276209-G-T 16164329-G-T P6_Prx **
17061635-G-T 14949755-G-T **
18270396-G-T 16158516-G-T **
17127311-T-A 15015431-T-A **
17882837-C-A 15770957-C-A **
18211390-G-T 16099510-G-T **
17545470-G-T 15433590-G-T **
17923538-C-G 15811658-C-G **
17884622-G-A 15772742-G-A **
17257311-A-T 15145431-A-T **
17270742-G-T 15158862-G-T **
17306578-C-A 15194698-C-A **
17490149-C-A 15378269-C-A **
17561526-C-A 15449646-C-A **
17923534-G-A 15811654-G-A **
17923533-T-C 15811653-T-C **
17002477-C-A 14890597-C-A **
4758-C-A **
16990292-T-A 14878412-T-A **
14614680-C-A 12502878-C-A **
15380415-T-C 13268535-T-C **
15297538-T-C 13185637-T-C **
15168382-C-A 13056468-C-A **
15131620-CATTGTGGTTTT-C 13019707-CATTGTGGTTTT-C **
15044222-C-A 12932312-C-A **
14871279-C-A 12759349-C-A **
14757397-C-A 12645466-C-A **
14715900-G-T 12603967-G-T **
14584696-C-G 12472896-C-G **
15731398-C-A 13619518-C-A **
14584658-A-T 12472858-A-T **
14511190-G-C 12399395-G-C **
14508622-C-A 12396827-C-A **
14505279-T-G 12393484-T-G **
14380225-A-C 12259521-A-C **
14339263-T-A 12218558-T-A **
14178582-A-T 12057876-A-T **
14176495-T-G 12055789-T-G **
15731278-C-A 13619398-C-A **
15734286-C-A 13622406-C-A **
16990140-C-A 14878260-C-A **
16539737-C-T 14427857-C-T **
16987861-A-T 14875981-A-T **
16926139-T-A 14814259-T-A **
18539098-C-A 16427218-C-A **
16652224-C-A 14540344-C-A **
16652053-C-A 14540173-C-A **
16588304-C-A 14476424-C-A **
16583277-C-A 14471397-C-A **
16550815-T-A 14438935-T-A **
16394789-G-C 14282909-G-C **
15761986-T-A 13650106-T-A **
16246307-G-T 14134427-G-T **
16216521-A-T 14104641-A-T **
16177284-C-A 14065404-C-A **
16028472-T-G 13916592-T-G **
16027787-C-A 13915907-C-A **
15999832-G-T 13887952-G-T **
15995529-C-A 13883649-C-A **
15932312-C-A 13820432-C-A **
15920960-C-A 13809080-C-A **
18423902-A-T 16312022-A-T P6_Gap **
19706169-C-A 17594289-C-A P5_Prx **
18547001-A-T 16435121-A-T **
26098096-C-G 23951949-C-G P1_Y1 **
28458607-C-A 26312460-C-A **
27971826-T-A 25825679-T-A P1_Y2 **
27966857-GTATATATATATATA-G 25820710-GTATATATATATATA-G P1_Y2 21×TA**
27952030-T-G 25805883-T-G P1_Y2 **
27903143-T-C 25756996-T-C P1_Y2 **
26098111-C-A 23951964-C-A P1_Y1 **
26035157-T-A 23889010-T-A P1_Y1 **
28507345-C-A 26361198-C-A **
25930994-G-T 23784847-G-T P1_Y1 **
25521888-G-T 23375741-G-T P1_gr1 **
24343481-C-A 22197334-C-A P3_t1 **
24305686-A-T 22159539-A-T P3_t1 **
24278290-G-GAC 22132143-G-GAC P3_b1 **
24245697-T-A 22099550-T-A P3_b1 **
24245666-G-A 22099519-G-A P3_b1 **
28462205-G-T 26316058-G-T **
28536303-C-A 26390156-C-A **
23807525-G-T 21645639-G-T **
28742137-T-G 26595990-T-G **
56846456-T-G **
56724817-T-A **
56724804-G-T **
56724802-T-TCATCA **
56724798-G-A **
58866074-A-G 56724797-T-C **
28792997-G-T 26646850-G-T **
28742125-A-C 26595978-A-C **
28542410-C-A 26396263-C-A **
28729033-T-A 26582886-T-A **
28656820-G-A 26510673-G-A **
28653909-A-T 26507762-A-T **
28640316-C-A 26494169-C-A **
28575104-A-T 26428957-A-T **
28558880-T-C 26412733-T-C **
28549928-C-A 26403781-C-A **
21751056-C-G **
23395834-A-T 21233948-A-T **
18626582-CTTTTT-C 16514702-CTTTTT-C 25×T**
13948466-G-T 11827760-G-T **
20707135-T-A 18545249-T-A P4_Prx **
20434666-C-A 18272780-C-A P5_Dst **
20428141-T-TG 18266255-T-TG P5_Dst **
20275231-T-A 18113345-T-A P5_Dst **
20048661-A-T 17936781-A-T P5_Prx **
19706176-AT-A 17594296-AT-A P5_Prx **
19706167-A-G 17594287-A-G P5_Prx **
21054379-C-A 18892493-C-A 18×A**
19517867-C-A 17405987-C-A **
19499079-C-A 17387199-C-A **
19425776-C-G 17313896-C-G **
19155869-C-A 17043989-C-A **
19146595-T-G 17034715-T-G **
18937372-G-A 16825492-G-A **
18892326-T-G 16780446-T-G **
21005627-A-T 18843741-A-T P4_Dst **
21154030-C-A 18992144-C-A **
23050315-C-A 20888429-C-A **
21888467-C-A 19726581-C-A **
23013655-T-C 20851769-T-C **
22808926-T-G 20647040-T-G **
22644130-A-T 20482244-A-T **
22356949-G-T 20195063-G-T DYZ19 **
22356906-T-C 20195020-T-C DYZ19 **
22205503-A-G 20043617-A-G **
21954838-C-T 19792952-C-T **
21836624-A-T 19674738-A-T **
21221178-C-A 19059292-C-A **
21836623-G-C 19674737-G-C **
21559036-G-T 19397150-G-T **
21511258-C-A 19349372-C-A **
21457982-C-A 19296096-C-A **
21410118-G-T 19248232-G-T **
21315238-C-A 19153352-C-A **
21281261-C-A 19119375-C-A **
13995952-G-A 11875246-G-A **
13861004-G-T 11740298-G-T **
13940978-T-A 11820272-T-A **
5828760-A-AG 5960719-A-AG **
6445275-C-A 6577234-C-A **
6444835-ACTAT-A 6576794-ACTAT-A **
6359287-G-T 6491246-G-T **
6212209-T-A 6344168-T-A IR3_Dst **
6086214-GTACCACA-G 6218173-GTACCACA-G **
6086037-C-G 6217996-C-G **
6052382-G-T 6184341-G-T **
5780974-G-T 5912933-G-T **
6581673-A-C 6713632-A-C **
5774121-A-G 5906080-A-G **
5774065-G-T 5906024-G-T **
5639030-C-A 5770989-C-A **
5638999-G-C 5770958-G-C **
5601015-C-A 5732974-C-A **
5187066-T-A 5319025-T-A **
5084713-A-T 5216672-A-T 10×T**
5048475-C-A 5180434-C-A **
6490649-C-A 6622608-C-A **
6712714-G-T 6844673-G-T **
4810358-T-A 4942317-T-A **
7345510-G-A 7477469-G-A **
8751125-C-A 8883084-C-A **
8738877-G-A 8870836-G-A BY75542 **
8720146-C-A 8852105-C-A **
8045319-T-C 8177278-T-C **
7964620-TA-T 8096579-TA-T **
7640972-A-T 7772931-A-T **
7422384-C-A 7554343-C-A **
7360491-C-A 7492450-C-A **
7308286-C-A 7440245-C-A **
6752033-TG-T 6883992-TG-T **
7240256-T-G 7372215-T-G **
7235828-CTTGT-C 7367787-CTTGT-C **
7201578-ACCCCT-A 7333537-ACCCCT-A **
7164467-C-CAA 7296426-C-CAA 24×A**
7109426-C-A 7241385-C-A **
7094345-T-A 7226304-T-A **
6765658-T-A 6897617-T-A **
6756083-G-T 6888042-G-T **
4964388-C-A 5096347-C-A **
4797918-C-A 4929877-C-A **
9113607-AGCCACT-A **
7181906-C-A 7313865-C-A **
2824429-C-A 2956388-C-A **
2740501-G-T 2872460-G-T **
2729646-GTC-G 2861605-GTC-G **
10692764-C-CACCACT **
10692672-C-T **
10692646-C-T **
9944820-C-A 10107211-C-A **
10794733-A-T **
3105038-A-C 3236997-A-C **
10831089-C-A **
4374893-C-A 4506852-C-A **
10792717-T-C **
10974810-C-T **
10974729-A-G **
58986090-G-T 56839943-G-T **
21834098-ATG-A 19672212-ATG-A **
17196594-A-G 15084714-A-G M6700 Z6245 **
3104937-G-T 3236896-G-T **
3250678-C-A 3382637-C-A **
4754463-C-A 4886422-C-A **
4154896-T-G 4286855-T-G **
4702938-C-A 4834897-C-A **
4558186-G-T 4690145-G-T **
4552661-T-C 4684620-T-C **
4545622-C-A 4677581-C-A **
4469976-C-T 4601935-C-T **
4462976-C-A 4594935-C-A **
4215835-G-T 4347794-G-T **
4171780-G-A 4303739-G-A **
4094235-C-A 4226194-C-A **
3287260-C-A 3419219-C-A **
4077636-A-C 4209595-A-C **
4006605-C-A 4138564-C-A **
3877087-C-A 4009046-C-A **
3769304-A-C 3901263-A-C **
3707429-GAAA-G 3839388-GAAA-G 11×A**
3550277-C-A 3682236-C-A **
3539170-G-C 3671129-G-C **
3407828-C-A 3539787-C-A **
13935085-C-A 11814379-C-A **
8792946-C-A 8924905-C-A **
8966552-G-T 9128943-G-T **
10992897-A-T **
11036187-C-T **
11036172-CTCAAA-C **
11036139-C-T **
11029421-C-A **
11022897-CT-C **
11001356-A-C **
10996556-A-T **
10986624-GCCATT-G **
13199198-C-A 11043522-C-A **
10982259-A-T **
10976286-C-A **
10972381-CT-C **
10972378-C-CCT **
10959574-C-A **
9577152-C-A 9739543-C-A IR3_Prx **
10958875-C-G **
13196009-G-T 11040333-G-T **
13213525-T-A 11057849-T-A **
10950991-C-A **
13698631-C-T 11542955-C-T **
13902030-G-T 11781324-G-T **
13861017-T-A 11740311-T-A **
5739769-A-AT 5871728-A-AT 10×T**
11664781-G-T **
13726269-T-G 11570593-T-G **
13726266-G-A 11570590-G-A **
13698900-A-T 11543224-A-T **
13461757-A-C 11306081-A-C **
13214406-C-A 11058730-C-A **
13461724-T-G 11306048-T-G **
13461722-A-G 11306046-A-G **
13461719-C-T 11306043-C-T **
13332888-C-T 11177212-C-T **
13313798-G-T 11158122-G-T **
13313693-C-A 11158017-C-A **
13290402-C-A 11134726-C-A **
13255161-G-A 11099485-G-A **
10957923-C-A **
10958885-C-T **
10940883-C-CTGAAT **
10751033-C-G **
10792385-C-T **
10790507-T-TA **
10931205-C-T **
10788243-C-A **
10781087-C-A **
10767858-T-G **
10751558-C-A **
10688942-G-T **
9865238-C-A 10027629-C-A **
10686586-CACTTCAT-C **
10672156-T-G **
10669047-C-A **
10662813-C-A **
10652965-C-A **
10652960-C-G **
10094190-C-A 10256581-C-A **
10792401-C-A **
10792744-AT-A **
10807979-C-A **
10828667-A-C **
10930548-T-G **
10927461-C-A **
10927444-T-C **
10904054-A-T **
9700673-C-A 9863064-C-A IR3_Prx **
10899072-T-A **
10889832-C-A **
10889600-C-T **
10889558-C-A **
10889543-G-A **
10877513-C-A **
10862229-C-A **
10852263-T-A **
10841052-C-CAATTA **
10839890-T-C **
56839373-C-A ***
56830344-A-T ***
19113723-TAAAAAAAA-T 17001843-TAAAAAAAA-T 28×A***
14194880-G-A 12074174-G-A ***
6929531-T-C 7061490-T-C ***
11677435-T-C ***
10009504-C-A 10171895-C-A ***
13483769-C-A 11328093-C-A ***
13296344-C-A 11140668-C-A ***
16467514-G-T 14355634-G-T Y69965 ***
23188205-C-A 21026319-C-A ***
21086154-A-C 18924268-A-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 254224982757880190087902022
Used in age calculations982757880190087902022
Counts of SNPs2727
Variant counts last updated 2019-07-19 21:29:39.



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