Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > Z193

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
345651
18278203-G-A 16166323-G-A P6_Prx A*
25934501-C-A 23788354-C-A P1_Y1 A*
20722909-T-C 18561023-T-C P4_Prx A*
20757706-G-A 18595820-G-A P4_Prx A*
20758009-G-A 18596123-G-A P4_Prx A*
22313515-T-G 20151629-T-G DYZ19 A*
22290962-C-A 20129076-C-A DYZ19 A*
15129421-G-A 13017508-G-A Y140060 YY+
17382982-ATATG-A 15271102-ATATG-A +
16869861-G-C 14757981-G-C Y140068 YY+
16733217-C-T 14621337-C-T Y140072 YY+
16688758-G-T 14576878-G-T Y140066 YY+
15935904-AAAG-A 13824024-AAAG-A +
18041-G-T +
14762889-T-C 12650958-T-C Y140085 YY+
17488764-TAAG-T 15376884-TAAG-T +
14327764-G-C 12207058-G-C Y49378 YY+
14322115-T-C 12201409-T-C Y140057 YY+
14188263-G-C 12067557-G-C Y140078 YY+
13656099-A-G 11500423-A-G Y140059 +
9158587-T-C 9320978-T-C Y140067 +
8535724-C-T 8667683-C-T Y140077 YY+
8396461-G-A 8528420-G-A Y140061 YY+
14418452-C-G 12297727-C-G Y140070 YY+
19089089-T-G 16977209-T-G Y140056 YY+
17711232-C-T 15599352-C-T Y140076 YY+
22356554-G-C 20194668-G-C BY217641 DYZ19 +
24871227-A-C 22725080-A-C BY226130 P3_b2 +
24470629-C-T 22324482-C-T F3655 Y+
22775853-T-C 20613967-T-C Y140062 YY+
22582238-T-C 20420352-T-C Y140081 YY+
22582132-C-G 20420246-C-G Y140073 YY+
22507448-G-C 20345562-G-C BY225352 DYZ19 +
22263116-T-G 20101230-T-G BY214667 DYZ19 +
17842689-G-A 15730809-G-A Y140086 YY+
21234044-C-A 19072158-C-A Y140058 YY+
21231784-C-T 19069898-C-T Y140084 YY+
21210755-C-T 19048869-C-T Y140075 YY+
19454736-C-T 17342856-C-T S3009 YY+
19244460-A-G 17132580-A-G Y140064 YY+
6112415-A-G 6244374-A-G BY59108 +
18381631-A-C 16269751-A-C Y140071 P6_Gap +
8242188-G-A 8374147-G-A Y140069 YY+
14044182-G-A 11923476-G-A FGC72499 Y133186 YY+
9095568-C-T 9257959-C-T Y140063 Y+
2806994-C-G 2938953-C-G Y140082 YY+
7230843-T-C 7362802-T-C FT133395 YY*
7230871-T-G 7362830-T-G FT133396 YY*
22254060-T-A 20092174-T-A DYZ19 *
7230679-T-C 7362638-T-C YY*
22299135-C-T 20137249-C-T DYZ19 *
3818317-C-A 3950276-C-A **
18205011-CA-C 16093131-CA-C **
18185611-G-T 16073731-G-T **
18158681-C-A 16046801-C-A Y54327 **
18124325-GA-G 16012445-GA-G **
18098899-C-A 15987019-C-A **
18024535-T-A 15912655-T-A **
18019053-C-A 15907173-C-A **
18374164-T-A 16262284-T-A P6_Prx **
17940039-G-A 15828159-G-A F22304 **
17913077-C-A 15801197-C-A **
17859881-C-A 15748001-C-A **
10982365-T-C **
17715487-C-T 15603607-C-T Y140065 **
10982427-A-T **
17503979-C-A 15392099-C-A **
2759992-C-A 2891951-C-A **
17342925-A-T 15231045-A-T **
9602719-G-T 9765110-G-T IR3_Prx **
6519695-C-A 6651654-C-A **
18374177-G-T 16262297-G-T P6_Prx **
14424019-G-T 12303294-G-T **
17081277-A-T 14969397-A-T **
19422087-C-A 17310207-C-A **
19356531-T-A 17244651-T-A **
19311092-T-C 17199212-T-C **
19310991-A-T 17199111-A-T **
19309454-TATATATAC-T 17197574-TATATATAC-T **
19247039-C-G 17135159-C-G **
10692849-A-T **
19226540-C-A 17114660-C-A **
19106876-C-A 16994996-C-A **
19055578-A-C 16943698-A-C **
17191679-G-C 15079799-G-C **
19044270-T-G 16932390-T-G **
18991145-T-G 16879265-T-G **
18976739-C-A 16864859-C-A **
18750132-A-T 16638252-A-T **
18701669-ATGAATG-A 16589789-ATGAATG-A **
18659563-A-G 16547683-A-G **
18631876-C-A 16519996-C-A **
18628113-G-T 16516233-G-T **
18597986-A-C 16486106-A-C **
18544768-C-A 16432888-C-A **
18388253-CA-C 16276373-CA-C P6_Gap **
17227113-G-T 15115233-G-T **
17040648-C-A 14928768-C-A **
17098887-A-T 14987007-A-T **
14799963-T-A 12688034-T-A **
15776253-T-C 13664373-T-C FT89360 **
15734372-G-C 13622492-G-C **
15653364-C-G 13541484-C-G **
15622368-A-T 13510488-A-T **
15533734-A-G 13421854-A-G **
15401308-T-A 13289428-T-A **
15167914-T-C 13056000-T-C **
3016313-T-G 3148272-T-G **
15084662-C-A 12972752-C-A **
3048106-C-A 3180065-C-A **
2952618-C-A 3084577-C-A **
14726530-A-T 12614598-A-T **
14689209-A-C 12577275-A-C **
14689029-C-A 12577095-C-A **
3846929-C-A 3978888-C-A **
14568256-C-A 12456456-C-A **
14557641-C-A 12445842-C-A **
14553119-A-T 12441320-A-T **
14526960-C-G 12415161-C-G **
14513109-G-A 12401314-G-A **
12379383-T-G **
15808932-T-A 13697052-T-A **
16115698-G-T 14003818-G-T P8_Prx **
19477682-G-A 17365802-G-A **
16450308-A-C 14338428-A-C **
2817188-C-A 2949147-C-A **
16823720-C-A 14711840-C-A **
2839939-C-A 2971898-C-A **
2926381-T-C 3058340-T-C **
16620607-G-T 14508727-G-T **
16620599-A-T 14508719-A-T **
16620582-A-T 14508702-A-T **
16533797-T-A 14421917-T-A **
16531083-CAAAAAA-C 14419203-CAAAAAA-C 24×A**
16450315-A-C 14338435-A-C **
16266132-C-A 14154252-C-A **
16115704-A-T 14003824-A-T P8_Prx **
16266042-A-C 14154162-A-C **
16244910-C-T 14133030-C-T **
16243036-C-A 14131156-C-A **
16115753-A-T 14003873-A-T P8_Prx **
16115752-A-T 14003872-A-T P8_Prx **
16115741-C-G 14003861-C-G P8_Prx **
16115726-A-T 14003846-A-T P8_Prx **
16115720-A-T 14003840-A-T P8_Prx **
16115719-G-T 14003839-G-T P8_Prx **
16115715-G-T 14003835-G-T P8_Prx **
19465620-A-C 17353740-A-C **
19733359-G-T 17621479-G-T P5_Prx **
19539599-A-C 17427719-A-C **
24381308-C-T 22235161-C-T **
25958001-G-T 23811854-G-T P1_Y1 **
25957996-G-T 23811849-G-T P1_Y1 **
25957983-G-T 23811836-G-T P1_Y1 **
24878797-G-T 22732650-G-T g1 **
24474988-A-T 22328841-A-T **
20803091-T-A 18641205-T-A P4_Gap **
24421031-C-T 22274884-C-T **
24421022-C-A 22274875-C-A **
24421004-T-A 22274857-T-A **
24290890-G-T 22144743-G-T P3_t1 **
25958029-G-T 23811882-G-T P1_Y1 **
23823463-C-A 21661577-C-A **
23768829-C-A 21606943-C-A **
23569748-C-A 21407862-C-A **
23465790-C-T 21303904-C-T **
23391657-C-A 21229771-C-A **
23355340-C-A 21193454-C-A **
23306658-C-A 21144772-C-A **
23262480-T-G 21100594-T-G **
23180511-C-A 21018625-C-A **
23180492-T-A 21018606-T-A **
25958015-G-T 23811868-G-T P1_Y1 **
25997414-C-A 23851267-C-A P1_Y1 **
23180468-T-A 21018582-T-A **
28659700-G-T 26513553-G-T **
56847943-C-T **
56846025-G-T **
56841323-G-T **
56825779-C-A **
28798267-G-GAGTGT 26652120-G-GAGTGT **
28798266-G-T 26652119-G-T **
28798236-T-G 26652089-T-G **
28761323-C-T 26615176-C-T **
28659723-G-T 26513576-G-T **
28600729-T-A 26454582-T-A **
26152673-C-A 24006526-C-A P1_Y1 **
28596790-C-A 26450643-C-A **
28560749-T-G 26414602-T-G **
28155679-G-T 26009532-G-T P1_b4 **
27949508-G-C 25803361-G-C P1_Y2 **
27916506-G-T 25770359-G-T P1_Y2 **
27856434-G-T 25710287-G-T P1_Y2 **
27541308-C-A 25395161-C-A P1_Y2 **
27466746-A-T 25320599-A-T P1_Y2 **
27396792-C-T 25250645-C-T P1_g3 **
26228686-T-G 24082539-T-G P1_Y1 **
23180478-T-A 21018592-T-A **
23048238-G-C 20886352-G-C **
19733340-T-A 17621460-T-A P5_Prx **
4932104-G-T 5064063-G-T **
21315044-A-G 19153158-A-G FT89621 **
3073758-C-A 3205717-C-A **
28462354-G-T 26316207-G-T **
9602732-G-T 9765123-G-T IR3_Prx **
21077054-A-T 18915168-A-T **
21077033-C-CA 18915147-C-CA **
20961651-A-T 18799765-A-T P4_Dst **
20815938-C-A 18654052-C-A P4_Gap **
8673915-C-A 8805874-C-A **
20652975-T-G 18491089-T-G P4_Prx **
21513958-C-A 19352072-C-A **
20651570-A-G 18489684-A-G P4_Prx **
20570307-T-A 18408421-T-A P5_Dst **
20560107-G-C 18398221-G-C P5_Dst **
20560104-G-TCCCCCCC 18398218-G-TCCCCCCC P5_Dst **
20560097-TAGAGATG-T 18398211-TAGAGATG-T P5_Dst **
19788361-T-TA 17676481-T-TA P5_Prx **
19733373-T-A 17621493-T-A P5_Prx **
19733366-C-A 17621486-C-A P5_Prx **
14371294-G-A 12250590-G-A **
19733354-T-A 17621474-T-A P5_Prx **
21513885-C-T 19351999-C-T **
21545306-C-CT 19383420-C-CT **
22974431-C-A 20812545-C-A **
22446644-A-T 20284758-A-T DYZ19 **
22974297-C-A 20812411-C-A **
22951102-C-A 20789216-C-A 13×T**
22869054-C-A 20707168-C-A **
22800660-G-A 20638774-G-A **
22775231-A-C 20613345-A-C **
15636163-A-G 13524283-A-G FGC34775 **
22341305-C-A 20179419-C-A DYZ19 **
22564552-C-G 20402666-C-G **
16996654-C-CT 14884774-C-CT 15×T**
22483288-G-T 20321402-G-T DYZ19 **
24401977-C-A 22255830-C-A **
21635336-A-T 19473450-A-T **
22315957-T-G 20154071-T-G DYZ19 **
13726384-A-G 11570708-A-G **
13726428-T-C 11570752-T-C **
22210558-T-A 20048672-T-A **
22210534-T-A 20048648-T-A **
22168722-G-T 20006836-G-T **
22159385-A-C 19997499-A-C **
22122901-C-A 19961015-C-A **
22092840-T-A 19930954-T-A **
21691979-C-A 19530093-C-A **
3082594-T-G 3214553-T-G **
14662291-GTGGATGGA-G 12550356-GTGGATGGA-G 6×TGGA**
14354475-T-A 12233770-T-A **
8981543-T-C 9143934-T-C **
9504622-G-T 9667013-G-T **
9417015-A-C 9579406-A-C **
9381007-G-T 9543398-G-T Y140080 **
9194044-T-A 9356435-T-A **
9194011-T-A 9356402-T-A **
9194008-G-T 9356399-G-T **
3578975-A-C 3710934-A-C **
8988070-A-C 9150461-A-C **
8981609-G-T 9144000-G-T **
8761531-G-T 8893490-G-T FGC43368 **
9513319-C-A 9675710-C-A **
8672912-A-T 8804871-A-T **
3657213-C-A 3789172-C-A **
8408488-T-A 8540447-T-A **
3688508-T-A 3820467-T-A **
3723233-G-T 3855192-G-T **
8135427-A-T 8267386-A-T **
8092108-C-A 8224067-C-A **
7939325-T-A 8071284-T-A **
7755337-A-C 7887296-A-C **
7455037-T-TC 7586996-T-TC IR1_L **
9507979-G-C 9670370-G-C **
9557585-A-AT 9719976-A-AT IR3_Prx **
7416652-G-T 7548611-G-T **
10673075-T-C **
10792729-A-T **
10787284-G-T **
10783058-T-G **
10760009-C-T **
10760004-C-A **
10757213-C-CCACTCCATTT **
10692132-T-G **
14339018-C-A 12218313-C-A **
10677378-CTCCAT-C **
10672715-C-A **
9602705-A-T 9765096-A-T IR3_Prx **
10656299-C-A **
10654409-T-A **
10654404-A-C **
10654396-TAGTTC-T **
10039499-C-A 10201890-C-A **
9959209-C-A 10121600-C-A **
9936292-T-A 10098683-T-A **
9899400-C-A 10061791-C-A **
9773413-C-A 9935804-C-A **
9624851-A-C 9787242-A-C IR3_Prx **
7430647-C-A 7562606-C-A **
7371641-C-A 7503600-C-A **
10800796-G-T **
4780040-C-A 4911999-C-A **
5203233-T-C 5335192-T-C **
5190899-A-C 5322858-A-C **
5018562-T-C 5150521-T-C **
5018541-T-A 5150500-T-A **
5018519-T-A 5150478-T-A **
4959450-C-A 5091409-C-A **
4957128-C-A 5089087-C-A **
4906211-G-T 5038170-G-T **
4870291-G-T 5002250-G-T **
4506342-C-A 4638301-C-A FT88576 **
5577301-C-A 5709260-C-A **
4480069-C-A 4612028-C-A **
4452558-G-T 4584517-G-T **
4447390-C-A 4579349-C-A **
4240419-A-G 4372378-A-G **
4214265-A-C 4346224-A-C **
4172222-A-C 4304181-A-C **
3999197-A-T 4131156-A-T **
3969032-C-A 4100991-C-A **
3938391-G-T 4070350-G-T **
3883603-C-A 4015562-C-A **
5367528-A-T 5499487-A-T **
5587071-G-T 5719030-G-T **
7358237-A-T 7490196-A-T **
6784537-A-C 6916496-A-C **
7353083-T-A 7485042-T-A **
7336186-A-T 7468145-A-T **
7186759-G-T 7318718-G-T **
7185231-T-G 7317190-T-G **
7160926-T-G 7292885-T-G **
7156668-C-A 7288627-C-A **
7115953-C-A 7247912-C-A **
6926935-C-A 7058894-C-A **
6831329-C-A 6963288-C-A **
6688625-C-A 6820584-C-A **
5644706-G-T 5776665-G-T **
6666182-T-A 6798141-T-A **
6651286-G-C 6783245-G-C **
6432721-G-T 6564680-G-T **
6368061-T-A 6500020-T-A **
3733457-G-T 3865416-G-T **
6106126-T-A 6238085-T-A **
6106098-T-G 6238057-T-G **
6106087-A-C 6238046-A-C **
6096860-C-T 6228819-C-T **
5887682-C-A 6019641-C-A **
10794193-C-A **
13323521-C-A 11167845-C-A **
10801050-C-T **
11036211-A-T **
13584876-C-A 11429200-C-A **
13510636-C-T 11354960-C-T **
13474098-C-T 11318422-C-T **
13472039-A-T 11316363-A-T **
13446555-C-T 11290879-C-T **
13316228-T-A 11160552-T-A **
13217056-G-T 11061380-G-T **
13198121-C-G 11042445-C-G **
11036212-C-CCAAAT **
11036195-C-G **
13705477-AATGGAATGGAATG-A 11549801-AATGGAATGGAATG-A **
11036192-C-G **
11036154-C-G **
11033753-C-T **
10806533-T-A **
11019479-C-T **
11019105-A-T **
11019078-C-A **
11019072-A-T **
11017558-C-A **
3501864-C-A 3633823-C-A **
13708964-G-T 11553288-G-T **
11010953-C-A **
13962042-CTTTTTTTT-C 11841336-CTTTTTTTT-C 28×T**
3148638-C-A 3280597-C-A **
3274874-G-T 3406833-G-T **
14299855-G-T 12179149-G-T **
14299845-C-A 12179139-C-A **
14273757-A-T 12153051-A-T **
14267046-A-G 12146340-A-G **
14195181-G-T 12074475-G-T **
14184588-C-A 12063882-C-A **
14008763-C-A 11888057-C-A **
13824685-T-G 11703979-T-G **
13711358-T-A 11555682-T-A **
13824612-A-T 11703906-A-T **
11662730-A-T **
11651342-G-T **
11648233-A-T **
11648194-T-A **
11647019-A-C **
13726405-G-A 11570729-G-A **
13726372-A-G 11570696-A-G **
13726356-A-T 11570680-A-T **
13711381-A-T 11555705-A-T **
11016402-C-T **
11033728-CTCCAT-C **
10888916-A-T **
10916489-G-T **
10851047-T-C **
10942473-A-T **
10931852-TC-T **
10925364-CATTCA-C **
10839569-T-A **
10924999-A-C **
10924992-C-A **
10911738-G-C **
10961062-A-T **
10841504-C-T **
10888920-C-T **
11008778-C-A **
10859476-G-T **
10856409-T-C **
10851042-T-C **
10851043-T-A **
10830841-C-A **
10839563-A-T **
10829085-T-G **
10987214-TTCC-T **
10807642-C-A **
10808974-AC-A **
10828950-C-A **
10992124-G-T **
10987466-T-G **
10987220-TCC-T **
10828952-C-A **
10851090-C-A **
10972941-T-A **
10973732-G-T **
10754946-CC-C,CA ***
56884395-C-A ***
3343864-C-T 3475823-C-T ***
14557801-AC-A 12446002-AC-A ***
15312991-C-A 13201096-C-A ***
10764662-T-C ***
15181872-C-A 13069958-C-A ***
4841701-G-T 4973660-G-T ***
18636612-CTTT-C,CT 16524732-CTTT-C,CT 17×T***
56833850-C-CATTCCACTCT ***
10781644-C-G ***
18690177-TATATAC-T 16578297-TATATAC-T ***
14232925-C-A 12112219-C-A ***
14995166-C-A 12883251-C-A ***
56829970-CTCCAATCCAT-C,CTCCACTCCAC ***
56833353-CTCCACTCCAC-C,CTCCACTCCACTCCACACCATTCCAT ***
8976362-C-A 9138753-C-A ***
15620232-C-A 13508352-C-A ***
21425339-CTTTT-C,CTTT 19263453-CTTTT-C,CTTT 24×T***
17283366-C-A 15171486-C-A ***
8556313-GT-G,GTTT 8688272-GT-G,GTTT 17×T***
11014479-T-A,C ***
10999863-C-T ***
22147864-CT-C,CTT 19985978-CT-C,CTT 12×T***
22485966-T-A 20324080-T-A DYZ19 ***
8080932-T-C 8212891-T-C ***
7948036-C-A 8079995-C-A ***
22039875-A-G 19877989-A-G Z16153 ***
10967764-A-G ***
9461947-A-C 9624338-A-C ***
21505111-C-A 19343225-C-A ***
21255101-C-A 19093215-C-A ***
5800174-C-A 5932133-C-A ***
7256140-G-T 7388099-G-T ***
7230882-G-T 7362841-G-T FT133397 ***
16290775-GTATATATATATA-G 14178895-GTATATATATATA-G 19×TA***
13464422-T-A 11308746-T-A ***
7073504-G-A 7205463-G-A ***
13489422-G-A 11333746-G-A ***
20865487-GTATA-G,GTA 18703601-GTATA-G,GTA P4_Dst 9×TA***
10956561-CTCCATTCCAT-C,CTCCAT ***
10023228-C-A 10185619-C-A ***
13715148-C-A 11559472-C-A ***
15772579-C-T 13660699-C-T ***
5869745-C-A 6001704-C-A ***
10686658-CTCCTT-C,CTCCAC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 345651928626776173997532336
Used in age calculations928626776173997532336
Counts of SNPs2830
Variant counts last updated 2019-11-29 02:40:21.



Big Tree Main Page