Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > ZZ28 > FGC18441 > FGC18447 > FGC18453 > FGC18448

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
6MVR8
13216943-T-A 11061267-T-A FGC18449 +
22200870-G-A 20038984-G-A FGC18452 YY+
17072822-A-G 14960942-A-G FGC18450 YY+
6645913-C-G 6777872-C-G FGC18446 Y+
5910637-A-G 6042596-A-G FGC18445 +
3563516-C-G 3695475-C-G FGC18443 +
2923038-A-T 3054997-A-T FGC18442 +
17355460-C-CA 15243580-C-CA FGC18454 +
4110749-C-T 4242708-C-T FGC18444 *
8462064-C-CAAAA 8594023-C-CAAAA 26×A**
9429667-C-CAAAAAAAA 9592058-C-CAAAAAAAA 25×A**
14565557-G-T 12453757-G-T **
13205595-AATAT-A 11049919-AATAT-A 9×AT**
5652187-A-T 5784146-A-T **
14088008-CT-C 11967302-CT-C **
19183814-C-CTTTT 17071934-C-CTTTT 28×T**
9939130-A-G 10101521-A-G **
9939336-A-G 10101727-A-G **
22495815-A-C 20333929-A-C DYZ19 ***
58869603-T-A 56721268-A-T ***
58874476-A-T 56716395-T-A ***
58870766-T-G 56720105-A-C ***
58870738-T-C 56720133-A-G ***
22360739-A-T 20198853-A-T DYZ19 ***
22361619-G-A 20199733-G-A DYZ19 ***
58868132-A-C 56722739-T-G ***
58874589-G-C 56716282-C-G ***
22361631-G-C 20199745-G-C DYZ19 ***
58865834-C-A 56725037-G-T ***
22364759-T-A 20202873-T-A DYZ19 ***
58865793-A-C 56725078-T-G ***
58848687-C-T 56742184-G-A ***
58848676-A-T 56742195-T-A ***
22364862-A-G 20202976-A-G DYZ19 ***
58874479-G-C 56716392-C-G ***
58879732-T-A 56711139-A-T ***
58848672-A-T 56742199-T-A ***
23199745-GA-G 21037859-GA-G ***
22256943-GTATG-ATGTA 20095057-GTATG-ATGTA DYZ19 ***
28546346-C-CA 26400199-C-CA 14×A***
59030791-G-GAA 56884644-G-GAA 10×A***
58972574-C-CAATTA 56826427-C-CAATTA ***
21287967-C-CT 19126081-C-CT 16×T***
22330069-TG-GT 20168183-TG-GT DYZ19 ***
58913058-C-A 56677813-G-T ***
22360737-T-C 20198851-T-C DYZ19 ***
58909184-G-T 56681687-C-A ***
58909101-T-A 56681770-A-T ***
58895483-T-A 56695388-A-T ***
22359909-C-G 20198023-C-G DYZ19 ***
58895472-G-A 56695399-C-T ***
58890761-A-C 56700110-T-G ***
58884806-A-C 56706065-T-G ***
22366619-C-T 20204733-C-T DYZ19 ***
58844890-C-A 56745981-G-T ***
22421727-A-G 20259841-A-G DYZ19 ***
26012426-C-A 23866279-C-A P1_Y1 ***
22420061-A-T 20258175-A-T DYZ19 ***
26523040-C-A 24376893-C-A P1_Y1 ***
26454324-T-A 24308177-T-A P1_Y1 ***
26454291-T-A 24308144-T-A P1_Y1 ***
26454281-T-A 24308134-T-A P1_Y1 ***
26012433-C-A 23866286-C-A P1_Y1 ***
26012425-T-A 23866278-T-A P1_Y1 ***
26523046-C-A 24376899-C-A P1_Y1 ***
26012417-C-T 23866270-C-T P1_Y1 ***
25934504-G-A 23788357-G-A P1_Y1 ***
25934497-T-C 23788350-T-C P1_Y1 ***
22504510-A-G 20342624-A-G DYZ19 ***
22504501-G-T 20342615-G-T DYZ19 ***
22496027-T-C 20334141-T-C DYZ19 ***
26523042-C-A 24376895-C-A P1_Y1 ***
22366709-G-A 20204823-G-A DYZ19 ***
58843809-G-C 56747062-C-G ***
22366638-A-C 20204752-A-C DYZ19 ***
58843795-G-T 56747076-C-A ***
58838271-G-A 56752600-C-T ***
58836486-T-C 56754385-A-G ***
22366624-A-T 20204738-A-T DYZ19 ***
22366628-C-G 20204742-C-G DYZ19 ***
58819988-C-A 56770883-G-T ***
13262767-CCT-GCC 11107091-CCT-GCC ***
27289351-G-A 25143204-G-A P1_g3 ***
28556230-T-G 26410083-T-G ***
28390094-G-A 26243947-G-A P1_gr2 ***
28063302-A-T 25917155-A-T P1_Y2 ***
27891452-T-A 25745305-T-A P1_Y2 ***
27520244-T-A 25374097-T-A P1_Y2 ***
27457374-G-A 25311227-G-A P1_Y2 ***
27403840-G-T 25257693-G-T P1_g3 ***
58819478-A-C 56771393-T-G ***
3543166-CA-C 3675125-CA-C 14×A***
13255624-G-GT 11099948-G-GT 10×T***
21665727-A-ATAAC 19503841-A-ATAAC ***
22263780-GTGT-ATGG 20101894-GTGT-ATGG DYZ19 ***
22261484-T-TCCGA 20099598-T-TCCGA DYZ19 ***
22236502-GACC-CACA 20074616-GACC-CACA DYZ19 ***
22236443-CC-GA 20074557-CC-GA DYZ19 ***
22127975-C-CTTTTTTT 19966089-C-CTTTTTTT 20×T***
22023201-C-CTTTTTTT 19861315-C-CTTTTTTT 20×T***
19728720-CTAG-GCAT 17616840-CTAG-GCAT P5_Prx ***
22292968-AT-GA 20131082-AT-GA DYZ19 ***
19252948-CA-C 17141068-CA-C 13×A***
18395723-TTATATATATATATATATATA-T 16283843-TTATATATATATATATATATA-T P6_Gap 27×TA***
17604931-GTTTTTTTTTT-G 15493051-GTTTTTTTTTT-G 24×T***
15138012-C-CTTTT 13026099-C-CTTTT 15×T***
15015255-C-CTTTTTTTAACT 12903342-G-GCTTTTTTTAA 24×T***
14496296-TG-GATGGA ***
13701985-ACTA-CCTC 11546309-ACTA-CCTC ***
22292962-TG-GT 20131076-TG-GT DYZ19 ***
22337200-CATGTC-TATGTA 20175314-CATGTC-TATGTA DYZ19 ***
13698855-ATGGTCTCCAAT-GTGGACTCAAGA 11543179-ATGGTCTCCAAT-GTGGACTCAAGA ***
58839782-GTG-TTT 56751087-CAC-AAA ***
58972572-T-TTCAAG 56826425-T-TTCAAG ***
58908655-TCTTCG-CATTCT 56682211-CGAAGA-AGAATG ***
58884239-GTTTGATGCCATCCCA-G 56706615-CATGGGATGGCATCAA-C ***
58870746-ATTCCATTT-TTTGGATTC 56720117-AAATGGAAT-GAATCCAAA ***
58870534-TTTCCAT-ATTCGTTC 56720331-ATGGAAA-GAACGAAT ***
58848701-T-TTTCCATTCCA 56742157-A-AAATGGAATGG ***
58848672-ATCCA-TTCCT 56742195-TGGAT-AGGAA ***
58831368-TTCCAGTCCATTAT-ATCGATTCAATTCC 56759490-ATAATGGACTGGAA-GGAATTGAATCGAT ***
22457227-C-CT 20295341-C-CT DYZ19 ***
28761382-C-CAAA 26615235-C-CAAA 31×A***
28551847-TCTC-T 26405700-TCTC-T ***
27997643-GA-G 25851496-GA-G P1_Y2 16×A***
26463097-C-CTTTTT 24316950-C-CTTTTT P1_Y1 36×T***
25268600-TAG-AAA 23122453-TAG-AAA P2_r1 ***
25268595-AG-A 23122448-AG-A P2_r1 ***
23435181-G-GTTT 21273295-G-GTTT 20×T***
13701069-TATTGGAAT-GATCAGAAC 11545393-TATTGGAAT-GATCAGAAC ***
13661307-A-AATGGC 11505631-A-AATGGC ***
10018232-CA-TG 10180623-CA-TG ***
6573333-T-TA 6705292-T-TA 10×A***
10012977-GTGAATTCT-CTGAGTTCC 10175368-GTGAATTCT-CTGAGTTCC ***
9524048-T-TACACAC 9686439-T-TACACAC ***
9351150-TCATATATATATATATATA-T 9513541-TCATATATATATATATATA-T ***
9311681-C-CTTTTTTT 9474072-C-CTTTTTTT 14×T***
8740664-G-GTTTTTTT 8872623-G-GTTTTTTT 10×T***
7362062-A-ATT 7494021-A-ATT ***
6586785-AC-CCT 6718744-AC-CCT ***
5010119-A-AACAC 5142078-A-AACAC ***
13129515-AGGTTC-TGGTAA 10619001-AGGTTC-TGGTAA ***
4776622-A-AAC 4908581-A-AAC 20×AC***
4389597-CTT-C 4521556-CTT-C 15×T***
22349422-C-A 20187536-C-A DYZ19 ***
3522968-T-TA 3654927-T-TA 24×A***
2845850-GAAT-AAAA 2977809-GAAT-AAAA ***
4973668-CA-C 5105627-CA-C 19×A***
28008237-G-GAGAA 25862090-G-GAGAA P1_Y2 14×AGAA***
10013011-CGGCTTGG-GGGTTTGC 10175402-CGGCTTGG-GGGTTTGC ***
13134921-CCTCT-GCTCA 10624407-CCTCT-GCTCA ***
13523462-ATTA-C 11367786-ATTA-C ***
13467564-CT-C 11311888-CT-C ***
13494558-TTTT-ATTA 11338882-TTTT-ATTA ***
13481403-TAGAA-AAGAC 11325727-TAGAA-AAGAC ***
13480153-ATCCCCGTC-TACACCCTG 11324477-ATCCCCGTC-TACACCCTG ***
13473354-GG-AA 11317678-GG-AA ***
13473344-TCCC-CCAA 11317668-TCCC-CCAA ***
13470394-TGG-CAT 11314718-TGG-CAT ***
13467568-TG-CA 11311892-TG-CA ***
13467511-AG-CT 11311835-AG-CT ***
13140078-GCGTGTGAT-AC 10629564-GCGTGTGAT-AC ***
13463155-CA-TG 11307479-CA-TG ***
13460188-CCCTC-GCCTA 11304512-CCCTC-GCCTA ***
13267778-C-CCCCCCCG 11112102-C-CCCCCCCG ***
13256139-CTTTC-GTTTT 11100463-CTTTC-GTTTT ***
13252587-CT-C 11096911-CT-C 12×T***
13216014-TGTTGG-CAC 11060338-TGTTGG-CAC ***
13140091-TTAAATCAGAATTCCTT-C 10629577-TTAAATCAGAATTCCTT-C ***
22357636-T-A 20195750-T-A DYZ19 ***
22314587-A-T 20152701-A-T DYZ19 ***
22342927-T-A 20181041-T-A DYZ19 ***
5441269-G-T 5573228-G-T ***
9194680-G-T 9357071-G-T ***
7502632-A-G 7634591-A-G IR1_L ***
7477339-A-T 7609298-A-T IR1_L ***
6200112-C-A 6332071-C-A IR3_Dst ***
6200102-C-A 6332061-C-A IR3_Dst ***
6200099-C-A 6332058-C-A IR3_Dst ***
5479874-G-A 5611833-G-A ***
5441261-G-A 5573220-G-A ***
9556925-T-A 9719316-T-A IR3_Prx ***
5308807-G-T 5440766-G-T ***
4843273-G-A 4975232-G-A ***
4521218-G-A 4653177-G-A ***
3283948-C-T 3415907-C-T ***
22297529-A-C 20135643-A-C DYZ19 ***
13467533-G-A 11311857-G-A ***
22480697-A-T 20318811-A-T DYZ19 ***
9556922-T-A 9719313-T-A IR3_Prx ***
9556926-T-A 9719317-T-A IR3_Prx ***
22256924-C-G 20095038-C-G DYZ19 ***
10034586-T-C 10196977-T-C ***
10092337-G-A 10254728-G-A ***
10092324-G-A 10254715-G-A ***
10092320-T-A 10254711-T-A ***
10092305-T-A 10254696-T-A ***
10090781-C-G 10253172-C-G ***
10090376-G-A 10252767-G-A ***
10066843-G-A 10229234-G-A ***
10015061-G-T 10177452-G-T ***
9556927-T-A 9719318-T-A IR3_Prx ***
10015016-C-T 10177407-C-T ***
9966747-A-T 10129138-A-T ***
9966742-A-G 10129133-A-G ***
9939318-C-T 10101709-C-T ***
9696999-C-T 9859390-C-T IR3_Prx ***
9639094-T-G 9801485-T-G IR3_Prx 19×TG***
9607754-A-T 9770145-A-T IR3_Prx ***
22330081-T-G 20168195-T-G DYZ19 ***
58916937-G-C 56673934-C-G ***
10092344-A-G 10254735-A-G ***
19610124-C-T 17498244-C-T P5_Prx 32×T***
10015017-A-G 10177408-A-G ***
22289732-GTC-ATA 20127846-GTC-ATA DYZ19 ***
7197570-A-AT 7329529-A-AT 19×T***
22289787-T-G 20127901-T-G DYZ19 ***
22256951-A-T 20095065-A-T DYZ19 ***
20537986-C-A 18376100-C-A P5_Dst ***
20537954-G-C 18376068-G-C P5_Dst ***
21965774-CA-C 19803888-CA-C 19×A***
9939470-T-C 10101861-T-C ***
20540937-C-T 18379051-C-T P5_Dst ***
20540889-A-T 18379003-A-T P5_Dst ***
13467511-A-C 11311835-A-C ***
58908683-G-T 56682188-C-A ***
22496026-C-A 20334140-C-A DYZ19 ***
13465768-C-A 11310092-C-A ***
28794961-CGC-GGG 26648814-CGC-GGG ***
13484675-C-A 11328999-C-A ***
10018241-A-G 10180632-A-G ***
13445300-C-G 11289624-C-G PF3682 ***
17562008-G-T 15450128-G-T ***
13468666-G-T 11312990-G-T ***
9939425-T-C 10101816-T-C ***
13467593-G-A 11311917-G-A ***
22256947-G-A 20095061-G-A DYZ19 ***
13311487-C-T 11155811-C-T ***
13485210-C-T 11329534-C-T ***
16308512-G-T 14196632-G-T ***
58916969-C-T 56673902-G-A ***
13139973-G-C 10629459-G-C ***
13479780-A-C 11324104-A-C ***
18270302-G-T 16158422-G-T ***
13500242-G-A 11344566-G-A ***
10015035-T-C 10177426-T-C ***
13607617-G-A 11451941-G-A ***
10018220-A-G 10180611-A-G ***
13323311-C-A 11167635-C-A ***
10092338-C-A 10254729-C-A ***
10092345-T-A 10254736-T-A ***
22342904-C-G 20181018-C-G DYZ19 ***
20663385-A-G 18501499-A-G P4_Prx ***
20887694-T-A 18725808-T-A P4_Dst ***
20887692-G-T 18725806-G-T P4_Dst ***
20887680-T-A 18725794-T-A P4_Dst ***
20887674-T-A 18725788-T-A P4_Dst ***
20719471-T-G 18557585-T-G P4_Prx ***
20719468-G-A 18557582-G-A P4_Prx ***
20719456-A-T 18557570-A-T P4_Prx ***
20612497-A-T 18450611-A-T P4_Prx ***
20974421-T-A 18812535-T-A P4_Dst ***
20607600-T-A 18445714-T-A P5_Dst ***
20607549-G-A 18445663-G-A P5_Dst ***
20544202-C-T 18382316-C-T P5_Dst ***
20537857-T-A 18375971-T-A P5_Dst ***
20368247-C-T 18206361-C-T P5_Dst ***
20368244-T-A 18206358-T-A P5_Dst ***
20368216-T-C 18206330-T-C P5_Dst ***
20974420-T-A 18812534-T-A P4_Dst ***
20974453-T-A 18812567-T-A P4_Dst ***
20368212-C-T 18206326-C-T P5_Dst ***
22273746-A-T 20111860-A-T DYZ19 ***
22330091-A-T 20168205-A-T DYZ19 ***
22330090-T-G 20168204-T-G DYZ19 ***
22314592-A-T 20152706-A-T DYZ19 ***
9732895-C-CAAAAAA 9895286-C-CAAAAAA IR3_Prx 20×A***
22297291-T-C 20135405-T-C DYZ19 ***
22297268-T-C 20135382-T-C DYZ19 ***
22297256-G-C 20135370-G-C DYZ19 ***
22250067-T-A 20088181-T-A DYZ19 ***
20974454-T-A 18812568-T-A P4_Dst ***
22250041-T-A 20088155-T-A DYZ19 ***
22248726-T-G 20086840-T-G DYZ19 ***
22236494-G-T 20074608-G-T DYZ19 ***
22232183-T-C 20070297-T-C DYZ19 ***
22226668-T-C 20064782-T-C DYZ19 ***
22223303-A-T 20061417-A-T DYZ19 ***
22167949-T-C 20006063-T-C ***
20368213-A-G 18206327-A-G P5_Dst ***
20368204-G-A 18206318-G-A P5_Dst ***
10092351-C-T 10254742-C-T ***
13473337-C-A 11317661-C-A ***
13500058-A-G 11344382-A-G ***
13485225-C-A 11329549-C-A ***
13485197-A-T 11329521-A-T ***
13473355-G-A 11317679-G-A ***
13473354-G-A 11317678-G-A ***
13473347-C-A 11317671-C-A ***
13473346-C-A 11317670-C-A ***
13470299-C-T 11314623-C-T ***
13698845-T-A 11543169-T-A ***
13256151-A-G 11100475-A-G ***
13256115-C-A 11100439-C-A ***
13250436-C-T 11094760-C-T ***
13139996-A-G 10629482-A-G ***
13134914-A-C 10624400-A-C ***
13110382-C-T 10599868-C-T ***
13110380-A-C 10599866-A-C ***
13698841-T-A 11543165-T-A ***
13730450-A-G 11574774-A-G ***
20367981-A-G 18206095-A-G P5_Dst ***
19714008-A-T 17602128-A-T P5_Prx ***
20025480-T-C 17913600-T-C P5_Prx ***
20005659-A-T 17893779-A-T P5_Prx ***
19760026-A-T 17648146-A-T P5_Prx ***
19728712-T-A 17616832-T-A P5_Prx ***
19714033-A-T 17602153-A-T P5_Prx ***
19714029-A-T 17602149-A-T P5_Prx ***
19714009-A-T 17602129-A-T P5_Prx ***
17994779-A-T 15882899-A-T P7_Prx ***
13876403-T-C 11755697-T-C ***
17527321-C-A 15415441-C-A ***
16309193-C-A 14197313-C-A ***
15798254-A-G 13686374-A-G ***
14491217-G-A ***
14441708-T-G 12320981-T-G ***
13878017-A-C 11757311-A-C ***
13877975-G-A 11757269-G-A ***
59006823-AAAAT-CACAC 56860676-AAAAT-CACAC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
Taylor1324141011-14121212141331189-1011112515193015-15-17-17111219-241515181736-37121212915-1681010810101223-231610121216811222113121113111112123415916122626211211131211913121011113012122413101020151914241712162412251810141791111

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 6MVR8*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs32
Variant counts last updated 2017-11-13 20:46:55.

* BED data not available. Using default values.


Big Tree Main Page