Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > ZZ28 > FGC18441 > FGC18447 > FGC18453

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
6MVR8
3563516-C-G 3695475-C-G FGC18443 +
13216943-T-A 11061267-T-A FGC18449 +
17355460-C-CA 15243580-C-CA FGC18454 +
17072822-A-G 14960942-A-G FGC18450 YY+
6645913-C-G 6777872-C-G FGC18446 Y+
5910637-A-G 6042596-A-G FGC18445 +
22200870-G-A 20038984-G-A FGC18452 YY+
14088008-CT-C 11967302-CT-C **
5652187-A-T 5784146-A-T **
19183814-C-CTTTT 17071934-C-CTTTT 28×T**
14565557-G-T 12453757-G-T **
8462064-C-CAAAA 8594023-C-CAAAA 26×A**
13423160-A-T 11267484-A-T **
58845839-CATTCGAGTCCATTCG-C 56745015-TTCGAATGGACTCGAA-T **
9429667-C-CAAAAAAAA 9592058-C-CAAAAAAAA 25×A**
9939336-A-G 10101727-A-G **
22266350-A-T 20104464-A-T DYZ19 **
10025156-C-T 10187547-C-T **
22353020-T-C 20191134-T-C DYZ19 **
13205595-AATAT-A 11049919-AATAT-A 9×AT**
23505495-C-CAAAA 21343609-C-CAAAA 23×A**
22353019-G-T 20191133-G-T DYZ19 **
20569614-C-CAAAAAAAAAAA 18407728-C-CAAAAAAAAAAA P5_Dst 33×A**
18297876-C-CTTTTTTT 16185996-C-CTTTTTTT P6_Prx 31×T**
13423188-T-A 11267512-T-A **
13470254-C-T 11314578-C-T **
22353012-G-A 20191126-G-A DYZ19 **
58846432-TTCCATTCCATTCAAA-T 56744414-CTGGAATGGATTTGAA-C **
9939130-A-G 10101521-A-G **
24895661-G-A 22749514-G-A g1 10×A**
22252915-T-G 20091029-T-G DYZ19 **
28586722-A-G 26440575-A-G **
17304689-C-CAGATAGAT 15192809-C-CAGATAGAT 11×AGAT**
22337314-G-C 20175428-G-C DYZ19 **
22297256-G-C 20135370-G-C DYZ19 ***
22273746-A-T 20111860-A-T DYZ19 ***
22252887-C-T 20091001-C-T DYZ19 ***
22250067-T-A 20088181-T-A DYZ19 ***
22297268-T-C 20135382-T-C DYZ19 ***
22250041-T-A 20088155-T-A DYZ19 ***
22501960-A-T 20340074-A-T DYZ19 ***
22501987-A-T 20340101-A-T DYZ19 ***
22366693-C-T 20204807-C-T DYZ19 ***
22248726-T-G 20086840-T-G DYZ19 ***
22314587-A-T 20152701-A-T DYZ19 ***
22236494-G-T 20074608-G-T DYZ19 ***
22234348-C-T 20072462-C-T DYZ19 ***
22504467-T-G 20342581-T-G DYZ19 ***
22232183-T-C 20070297-T-C DYZ19 ***
22504487-C-A 20342601-C-A DYZ19 ***
22504501-G-T 20342615-G-T DYZ19 ***
22226668-T-C 20064782-T-C DYZ19 ***
22223303-A-T 20061417-A-T DYZ19 ***
22504510-A-G 20342624-A-G DYZ19 ***
22167949-T-C 20006063-T-C ***
20974454-T-A 18812568-T-A P4_Dst ***
22297291-T-C 20135405-T-C DYZ19 ***
22330091-A-T 20168205-A-T DYZ19 ***
22314592-A-T 20152706-A-T DYZ19 ***
22360737-T-C 20198851-T-C DYZ19 ***
22366628-C-G 20204742-C-G DYZ19 ***
22366624-A-T 20204738-A-T DYZ19 ***
22366619-C-T 20204733-C-T DYZ19 ***
22365862-C-A 20203976-C-A DYZ19 ***
22364862-A-G 20202976-A-G DYZ19 ***
22364759-T-A 20202873-T-A DYZ19 ***
22366709-G-A 20204823-G-A DYZ19 ***
22367517-T-G 20205631-T-G DYZ19 ***
22361631-G-C 20199745-G-C DYZ19 ***
22361619-G-A 20199733-G-A DYZ19 ***
22420061-A-T 20258175-A-T DYZ19 ***
22360739-A-T 20198853-A-T DYZ19 ***
22421550-A-T 20259664-A-T DYZ19 ***
22330090-T-G 20168204-T-G DYZ19 ***
22421727-A-G 20259841-A-G DYZ19 ***
22495815-A-C 20333929-A-C DYZ19 ***
22359909-C-G 20198023-C-G DYZ19 ***
22358332-C-A 20196446-C-A DYZ19 ***
22496027-T-C 20334141-T-C DYZ19 ***
22358325-G-A 20196439-G-A DYZ19 ***
22357636-T-A 20195750-T-A DYZ19 ***
22349422-C-A 20187536-C-A DYZ19 ***
22342963-A-C 20181077-A-C DYZ19 ***
22342927-T-A 20181041-T-A DYZ19 ***
22342904-C-G 20181018-C-G DYZ19 ***
22366638-A-C 20204752-A-C DYZ19 ***
13459711-G-A 11304035-G-A BY47618 ***
20719471-T-G 18557585-T-G P4_Prx ***
20974453-T-A 18812567-T-A P4_Dst ***
13473354-G-A 11317678-G-A ***
14491217-G-A 12370486-A-. ***
14441708-T-G 12320981-T-G ***
13878017-A-C 11757311-A-C ***
13877975-G-A 11757269-G-A A13701 ***
13876403-T-C 11755697-T-C ***
13730450-A-G 11574774-A-G ***
13698845-T-A 11543169-T-A ***
13698841-T-A 11543165-T-A ***
13500058-A-G 11344382-A-G ***
13485225-C-A 11329549-C-A ***
13485197-A-T 11329521-A-T ***
13473398-G-T 11317722-G-T ***
13473355-G-A 11317679-G-A ***
13473347-C-A 11317671-C-A ***
16309193-C-A 14197313-C-A ***
13473346-C-A 11317670-C-A ***
13473337-C-A 11317661-C-A ***
13470315-G-A 11314639-G-A ***
13470299-C-T 11314623-C-T ***
13467602-T-A 11311926-T-A ***
13256151-A-G 11100475-A-G ***
13256115-C-A 11100439-C-A ***
13256107-A-C 11100431-A-C ***
13139996-A-G 10629482-A-G ***
13134914-A-C 10624400-A-C ***
13110382-C-T 10599868-C-T ***
13110380-A-C 10599866-A-C ***
10092351-C-T 10254742-C-T ***
15798254-A-G 13686374-A-G ***
17527321-C-A 15415441-C-A ***
20974421-T-A 18812535-T-A P4_Dst ***
20537857-T-A 18375971-T-A P5_Dst ***
20974420-T-A 18812534-T-A P4_Dst ***
20887694-T-A 18725808-T-A P4_Dst ***
20887692-G-T 18725806-G-T P4_Dst ***
20887680-T-A 18725794-T-A P4_Dst ***
20887674-T-A 18725788-T-A P4_Dst ***
25934504-G-A 23788357-G-A P1_Y1 ***
20719468-G-A 18557582-G-A P4_Prx ***
20719456-A-T 18557570-A-T P4_Prx ***
20663385-A-G 18501499-A-G P4_Prx ***
20612497-A-T 18450611-A-T P4_Prx ***
20607600-T-A 18445714-T-A P5_Dst ***
20607549-G-A 18445663-G-A P5_Dst ***
20544202-C-T 18382316-C-T P5_Dst ***
20368247-C-T 18206361-C-T P5_Dst ***
17994779-A-T 15882899-A-T P7_Prx ***
20368244-T-A 18206358-T-A P5_Dst ***
20368216-T-C 18206330-T-C P5_Dst ***
20368213-A-G 18206327-A-G P5_Dst ***
20368212-C-T 18206326-C-T P5_Dst ***
20368204-G-A 18206318-G-A P5_Dst ***
20367981-A-G 18206095-A-G P5_Dst ***
20005659-A-T 17893779-A-T P5_Prx ***
19760026-A-T 17648146-A-T P5_Prx ***
19728712-T-A 17616832-T-A P5_Prx ***
19714033-A-T 17602153-A-T P5_Prx ***
19714029-A-T 17602149-A-T P5_Prx ***
19714009-A-T 17602129-A-T P5_Prx ***
19714008-A-T 17602128-A-T P5_Prx ***
25934497-T-C 23788350-T-C P1_Y1 ***
26523042-C-A 24376895-C-A P1_Y1 ***
26012417-C-T 23866270-C-T P1_Y1 ***
13470394-TGG-CAT 11314718-TGG-CAT ***
15138012-C-CTTTT 13026099-C-CTTTT 15×T***
15015255-C-CTTTTTTTAACT 12903342-G-GCTTTTTTTAA 24×T***
14496296-TG-GATGGA ***
13701985-ACTA-CCTC 11546309-ACTA-CCTC ***
13701069-TATTGGAAT-GATCAGAAC 11545393-TATTGGAAT-GATCAGAAC ***
13698855-ATGGTCTCCAAT-GTGGACTCAAGA 11543179-ATGGTCTCCAAT-GTGGACTCAAGA ***
13661307-A-AATGGC 11505631-A-AATGGC ***
13494558-TTTT-ATTA 11338882-TTTT-ATTA ***
13481403-TAGAA-AAGAC 11325727-TAGAA-AAGAC ***
13480153-ATCCCCGTC-TACACCCTG 11324477-ATCCCCGTC-TACACCCTG ***
13479052-AGAAC-GGAAT 11323376-AGAAC-GGAAT ***
13473354-GG-AA 11317678-GG-AA ***
13473344-TCCC-CCAA 11317668-TCCC-CCAA ***
13467568-TG-CA 11311892-TG-CA ***
18395723-TTATATATATATATATATATA-T 16283843-TTATATATATATATATATATA-T P6_Gap 27×TA***
13467564-CT-C 11311888-CT-C ***
13467511-AG-CT 11311835-AG-CT ***
13465822-ATAT-CTAG 11310146-ATAT-CTAG ***
13463155-CA-TG 11307479-CA-TG ***
13460188-CCCTC-GCCTA 11304512-CCCTC-GCCTA ***
13267778-C-CCCCCCCG 11112102-C-CCCCCCCG ***
13256139-CTTTC-GTTTT 11100463-CTTTC-GTTTT ***
13216014-TGTTGG-CAC 11060338-TGTTGG-CAC ***
13140091-TTAAATCAGAATTCCTT-C 10629577-TTAAATCAGAATTCCTT-C ***
13140078-GCGTGTGAT-AC 10629564-GCGTGTGAT-AC ***
13134921-CCTCT-GCTCA 10624407-CCTCT-GCTCA ***
13129515-AGGTTC-TGGTAA 10619001-AGGTTC-TGGTAA ***
10013011-CGGCTTGG-GGGTTTGC 10175402-CGGCTTGG-GGGTTTGC ***
10012977-GTGAATTCT-CTGAGTTCC 10175368-GTGAATTCT-CTGAGTTCC ***
17604931-GTTTTTTTTTT-G 15493051-GTTTTTTTTTT-G 24×T***
18639018-A-AGTGT 16527138-A-AGTGT 26×GT***
9351150-TCATATATATATATATATA-T 9513541-TCATATATATATATATATA-T ***
25268600-TAG-AAA 23122453-TAG-AAA P2_r1 ***
58972572-T-TTCAAG 56826425-T-TTCAAG ***
58913232-TGATG-GAATT 56677635-CATCA-AATTC ***
58908655-TCTTCG-CATTCT 56682211-CGAAGA-AGAATG ***
58870746-ATTCCATTT-TTTGGATTC 56720117-AAATGGAAT-GAATCCAAA ***
58870534-TTTCCAT-ATTCGTTC 56720331-ATGGAAA-GAACGAAT ***
58848701-T-TTTCCATTCCA 56742157-A-AAATGGAATGG ***
58848672-ATCCA-TTCCT 56742195-TGGAT-AGGAA ***
58839782-GTG-TTT 56751087-CAC-AAA ***
58831368-TTCCAGTCCATTAT-ATCGATTCAATTCC 56759490-ATAATGGACTGGAA-GGAATTGAATCGAT ***
58823276-CCATTCCATCT-C 56767576-AATGGAATGAG-A ***
28761382-C-CAAA 26615235-C-CAAA 31×A***
28551847-TCTC-T 26405700-TCTC-T ***
27997643-GA-G 25851496-GA-G P1_Y2 16×A***
26463097-C-CTTTTT 24316950-C-CTTTTT P1_Y1 36×T***
25268595-AG-A 23122448-AG-A P2_r1 ***
19728720-CTAG-GCAT 17616840-CTAG-GCAT P5_Prx ***
22457227-C-CT 20295341-C-CT DYZ19 ***
22366823-AG-GC 20204937-AG-GC DYZ19 ***
22352888-ACTC-TATT 20191002-ACTC-TATT DYZ19 ***
22337200-CATGTC-TATGTA 20175314-CATGTC-TATGTA DYZ19 ***
22292968-AT-GA 20131082-AT-GA DYZ19 ***
22292962-TG-GT 20131076-TG-GT DYZ19 ***
22263780-GTGT-ATGG 20101894-GTGT-ATGG DYZ19 ***
22261484-T-TCCGA 20099598-T-TCCGA DYZ19 ***
22236502-GACC-CACA 20074616-GACC-CACA DYZ19 ***
22236443-CC-GA 20074557-CC-GA DYZ19 ***
22127975-C-CTTTTTTT 19966089-C-CTTTTTTT 20×T***
22023201-C-CTTTTTTT 19861315-C-CTTTTTTT 20×T***
21665727-A-ATAAC 19503841-A-ATAAC ***
21556919-C-CTT 19395033-C-CTT 23×T***
9524048-T-TACACAC 9686439-T-TACACAC ***
9311681-C-CTTTTTTT 9474072-C-CTTTTTTT 14×T***
26012425-T-A 23866278-T-A P1_Y1 ***
28556230-T-G 26410083-T-G ***
58865793-A-C 56725078-T-G ***
58854376-C-A 56736495-G-T 4×CCATT***
58852349-G-A 56738522-C-T ***
58848687-C-T 56742184-G-A ***
58848676-A-T 56742195-T-A ***
58848672-A-T 56742199-T-A ***
58848450-A-C 56742421-T-G ***
58844890-C-A 56745981-G-T ***
58843809-G-C 56747062-C-G ***
58843795-G-T 56747076-C-A ***
58838271-G-A 56752600-C-T ***
58836486-T-C 56754385-A-G ***
58819988-C-A 56770883-G-T ***
58819478-A-C 56771393-T-G ***
28390094-G-A 26243947-G-A P1_gr2 ***
58868132-A-C 56722739-T-G ***
28063302-A-T 25917155-A-T P1_Y2 ***
27891452-T-A 25745305-T-A P1_Y2 ***
27520244-T-A 25374097-T-A P1_Y2 ***
27457374-G-A 25311227-G-A P1_Y2 ***
27403840-G-T 25257693-G-T P1_g3 ***
27289351-G-A 25143204-G-A P1_g3 ***
26523046-C-A 24376899-C-A P1_Y1 ***
10092344-A-G 10254735-A-G ***
26523040-C-A 24376893-C-A P1_Y1 ***
26454324-T-A 24308177-T-A P1_Y1 ***
26454291-T-A 24308144-T-A P1_Y1 ***
26454281-T-A 24308134-T-A P1_Y1 ***
26012433-C-A 23866286-C-A P1_Y1 ***
26012426-C-A 23866279-C-A P1_Y1 ***
58865834-C-A 56725037-G-T ***
58869603-T-A 56721268-A-T ***
8740664-G-GTTTTTTT 8872623-G-GTTTTTTT 10×T***
22330069-TG-GT 20168183-TG-GT DYZ19 ***
7362062-A-ATT 7494021-A-ATT ***
6586785-AC-CCT 6718744-AC-CCT ***
6573333-T-TA 6705292-T-TA 10×A***
5010119-A-AACAC 5142078-A-AACAC ***
4776622-A-AAC 4908581-A-AAC 20×AC***
3543166-CA-C 3675125-CA-C 14×A***
2845850-GAAT-AAAA 2977809-GAAT-AAAA ***
18576435-AACAC-A 16464555-AACAC-A 15×AC***
28008237-G-GAGAA 25862090-G-GAGAA P1_Y2 14×AGAA***
10018232-CA-TG 10180623-CA-TG ***
13262767-CCT-GCC 11107091-CCT-GCC ***
22256943-GTATG-ATGTA 20095057-GTATG-ATGTA DYZ19 ***
59030791-G-GAA 56884644-G-GAA 10×A***
58972574-C-CAATTA 56826427-C-CAATTA ***
17919853-AAG-A 15807973-AAG-A ***
58870738-T-C 56720133-A-G ***
13494543-TAC-T 11338867-TAC-T ***
58913058-C-A 56677813-G-T ***
58909184-G-T 56681687-C-A ***
58909101-T-A 56681770-A-T ***
58906659-A-C 56684212-T-G ***
58895483-T-A 56695388-A-T ***
58895472-G-A 56695399-C-T ***
58890761-A-C 56700110-T-G ***
58884806-A-C 56706065-T-G ***
58879732-T-A 56711139-A-T ***
58874589-G-C 56716282-C-G ***
58874479-G-C 56716392-C-G ***
58874476-A-T 56716395-T-A ***
58870766-T-G 56720105-A-C ***
10092345-T-A 10254736-T-A ***
9966747-A-T 10129138-A-T ***
10092338-C-A 10254729-C-A ***
22342722-C-T 20180836-C-T DYZ19 ***
13930193-G-A 11809487-G-A ***
13635966-G-A 11480290-G-A ***
10104556-N-A 10266947-N-A ***
58839001-A-ATTTCT 56751867-C-CAAAGA ***
22263788-TGTTACAAC-CGTTTCAGT 20101902-TGTTACAAC-CGTTTCAGT DYZ19 ***
22252883-ATGA-GTGT 20090997-ATGA-GTGT DYZ19 ***
13467498-T-TC 11311822-T-TC ***
21965774-CA-C 19803888-CA-C 19×A***
58890263-A-T 56700608-T-A ***
58870539-A-T 56720332-T-A ***
58838996-C-A 56751875-G-T ***
22501967-G-T 20340081-G-T DYZ19 ***
22359867-T-G 20197981-T-G DYZ19 ***
22342676-C-T 20180790-C-T DYZ19 ***
22309303-T-G 20147417-T-G DYZ19 ***
22342639-T-A 20180753-T-A DYZ19 ***
22292044-A-T 20130158-A-T DYZ19 ***
22226515-A-G 20064629-A-G S3070 DYZ19 ***
20540960-G-A 18379074-G-A P5_Dst ***
20540945-T-C 18379059-T-C P5_Dst ***
20540937-C-T 18379051-C-T P5_Dst ***
20540889-A-T 18379003-A-T P5_Dst ***
13721630-G-A 11565954-G-A ***
13721624-G-T 11565948-G-T ***
22289623-C-A 20127737-C-A DYZ19 ***
13467511-A-C 11311835-A-C ***
58894963-TACATTTGATGCCATC-T 56695892-GGATGGCATCAAATGT-G ***
22435753-AGT-TAC 20273867-AGT-TAC DYZ19 ***
22422023-ATGTC-TTGGT 20260137-ATGTC-TTGGT DYZ19 ***
13485129-T-A 11329453-T-A ***
10090746-C-G 10253137-C-G ***
22248354-AT-CA 20086468-AT-CA DYZ19 ***
13485114-T-A 11329438-T-A ***
58829066-TTCCCTTCCGTTCGAT-A 56761790-ATCGAACGGAAGGGAA-T ***
13253210-TTT-C 11097534-TTT-C ***
18688521-C-AA 16576641-C-AA ***
5308799-TAGAG-T 5440758-TAGAG-T 19×AG***
58840728-C-T 56750143-G-A ***
22491425-A-T 20329539-A-T DYZ19 ***
22426426-G-C 20264540-G-C DYZ19 ***
22426403-G-T 20264517-G-T DYZ19 ***
22245026-T-C 20083140-T-C DYZ19 ***
13730431-G-C 11574755-G-C ***
10090710-A-G 10253101-A-G ***
10090703-A-C 10253094-A-C ***
22309354-T-C 20147468-T-C DYZ19 ***
26228689-C-CTTTTT 24082542-C-CTTTTT P1_Y1 27×T***
22309319-C-G 20147433-C-G DYZ19 ***
22501927-TTTAG-GTGAT 20340041-TTTAG-GTGAT DYZ19 ***
22282201-GCTGC-ACTGT 20120315-GCTGC-ACTGT DYZ19 ***
22235093-G-GC 20073207-G-GC DYZ19 ***
13467493-GT-G 11311817-GT-G ***
58848719-T-A 56742152-A-T ***
58843797-A-T 56747074-T-A ***
58831344-C-T 56759527-G-A ***
22501937-A-C 20340051-A-C DYZ19 ***
22501919-C-T 20340033-C-T DYZ19 ***
22366438-G-T 20204552-G-T DYZ19 ***
22366433-G-C 20204547-G-C DYZ19 ***
22266217-T-C 20104331-T-C DYZ19 ***
22252900-C-A 20091014-C-A DYZ19 ***
14491216-T-A 12370485-A-. ***
22341149-CTTCT-GCTCA 20179263-CTTCT-GCTCA DYZ19 ***
22248350-A-AC 20086464-A-AC DYZ19 ***
13473880-AGGAT-TGGAC 11318204-AGGAT-TGGAC ***
22360260-G-T 20198374-G-T DYZ19 ***
22232055-ACAC-GCAT 20070169-ACAC-GCAT DYZ19 ***
22232040-CAAA-AAAT 20070154-CAAA-AAAT DYZ19 ***
13488988-AGGGT-GGGGC 11333312-AGGGT-GGGGC ***
13203955-CATCATT-GACAATA 11048279-CATCATT-GACAATA ***
9732895-C-CAAAAAA 9895286-C-CAAAAAA IR3_Prx 20×A***
13203965-GA-G 11048289-GA-G ***
58885451-C-T 56705420-G-A ***
58874506-A-C 56716365-T-G ***
58843794-T-C 56747077-A-G ***
58843573-T-G 56747298-A-C ***
58831242-A-C 56759629-T-G ***
22504754-A-G 20342868-A-G DYZ19 ***
22361213-A-C 20199327-A-C DYZ19 ***
22358856-G-A 20196970-G-A DYZ19 ***
22266350-ATGT-TTGC 20104464-ATGT-TTGC DYZ19 ***
22263807-G-T 20101921-G-T BY43709 DYZ19 ***
22248495-G-A 20086609-G-A DYZ19 ***
13374277-G-C 11218601-G-C 13×A***
13129546-C-T 10619032-C-T ***
22421962-T-G 20260076-T-G DYZ19 ***
22256961-T-C 20095075-T-C DYZ19 ***
22341741-C-G 20179855-C-G DYZ19 ***
13485153-T-A 11329477-T-A ***
58967654-N-A 56821507-N-A ***
10025140-C-T 10187531-C-T ***
13708525-C-G 11552849-C-G ***
10025176-G-A 10187567-G-A ***
25709386-G-GTTTTT 23563239-G-GTTTTT P1_b3 31×T***
13143720-TATTCCATTCC-T 10633206-TATTCCATTCC-T 11×ATTCC***
22236464-CCCACCAAGG-ACCAGTAAGT 20074578-CCCACCAAGG-ACCAGTAAGT DYZ19 ***
22337234-GG-AA 20175348-GG-AA DYZ19 ***
22248332-TAC-AGT 20086446-TAC-AGT DYZ19 ***
22248366-A-C 20086480-A-C DYZ19 ***
16996654-CT-C 14884774-CT-C 15×T***
58908683-G-T 56682188-C-A ***
58908630-A-C 56682241-T-G ***
58841100-T-C 56749771-A-G ***
22496026-C-A 20334140-C-A DYZ19 ***
22435772-C-T 20273886-C-T DYZ19 ***
22366930-A-T 20205044-A-T DYZ19 ***
22366040-T-C 20204154-T-C DYZ19 ***
22366032-G-A 20204146-G-A DYZ19 ***
22360043-T-G 20198157-T-G DYZ19 ***
22337441-A-G 20175555-A-G DYZ19 ***
22337437-A-C 20175551-A-C DYZ19 ***
22250305-G-T 20088419-G-T DYZ19 ***
13129531-T-G 10619017-T-G ***
22337437-ACTTA-CCTTG 20175551-ACTTA-CCTTG DYZ19 ***
13129514-T-A 10619000-T-A ***
10090723-T-C 10253114-T-C ***
22256954-G-C 20095068-G-C DYZ19 ***
13465768-C-A 11310092-C-A F18170 ***
22268380-T-A 20106494-T-A DYZ19 ***
58909135-A-G 56681736-T-C ***
26538252-CA-C 24392105-CA-C P1_g2 17×A***
58885483-AGTC-TGTG 56705385-GACT-CACA ***
28794961-CGC-GGG 26648814-CGC-GGG ***
22495772-A-AC 20333886-A-AC DYZ19 ***
22457231-CT-C 20295345-CT-C DYZ19 ***
22364716-TTTG-ATTT 20202830-TTTG-ATTT DYZ19 ***
22361311-GGCTC-TGCTA 20199425-GGCTC-TGCTA DYZ19 ***
22358798-TTTCG-GTTCC 20196912-TTTCG-GTTCC DYZ19 ***
13203970-CCACCCCGCCTC-TAAT 11048294-CCACCCCGCCTC-TAAT ***
22495767-GC-A 20333881-GC-A DYZ19 ***
10092337-G-A 10254728-G-A ***
13485210-C-T 11329534-C-T ***
22480697-A-T 20318811-A-T DYZ19 ***
22297530-G-T 20135644-G-T DYZ19 ***
22330081-T-G 20168195-T-G DYZ19 ***
22256924-C-G 20095038-C-G DYZ19 ***
58916937-G-C 56673934-C-G ***
13445300-C-G 11289624-C-G PF3682 ***
13468666-G-T 11312990-G-T ***
9939425-T-C 10101816-T-C ***
13467593-G-A 11311917-G-A BY47620 ***
13311500-C-A 11155824-C-A ***
22256945-A-G 20095059-A-G DYZ19 ***
22256947-G-A 20095061-G-A DYZ19 ***
13311487-C-T 11155811-C-T ***
58916969-C-T 56673902-G-A ***
22297529-A-C 20135643-A-C DYZ19 ***
13479780-A-C 11324104-A-C ***
18270302-G-T 16158422-G-T ***
13500242-G-A 11344566-G-A ***
10015035-T-C 10177426-T-C ***
13607617-G-A 11451941-G-A ***
10018220-A-G 10180611-A-G FGC57105 ***
13139973-G-C 10629459-G-C ***
10018241-A-G 10180632-A-G ***
13282620-A-C 11126944-A-C ***
13699838-C-T 11544162-C-T ***
22328421-T-C 20166535-T-C DYZ19 ***
9939470-T-C 10101861-T-C ***
13461950-TGGT-AGGC 11306274-TGGT-AGGC ***
58869837-G-A 56721034-C-T ***
13467533-G-A 11311857-G-A ***
3283948-C-T 3415907-C-T ***
22273773-A-T 20111887-A-T DYZ19 ***
9607754-A-T 9770145-A-T IR3_Prx ***
10092324-G-A 10254715-G-A ***
10092320-T-A 10254711-T-A ***
10092305-T-A 10254696-T-A ***
10090781-C-G 10253172-C-G ***
10090376-G-A 10252767-G-A ***
10066843-G-A 10229234-G-A ***
10034586-T-C 10196977-T-C ***
10015061-G-T 10177452-G-T ***
10015016-C-T 10177407-C-T ***
9966742-A-G 10129133-A-G ***
9939318-C-T 10101709-C-T ***
9696999-C-T 9859390-C-T IR3_Prx ***
9639094-T-G 9801485-T-G IR3_Prx 19×TG***
9556927-T-A 9719318-T-A IR3_Prx ***
4521218-G-A 4653177-G-A ***
9556926-T-A 9719317-T-A IR3_Prx ***
9556925-T-A 9719316-T-A IR3_Prx ***
9556922-T-A 9719313-T-A IR3_Prx ***
9194680-G-T 9357071-G-T ***
7502632-A-G 7634591-A-G IR1_L ***
7477339-A-T 7609298-A-T IR1_L ***
7026596-C-G 7158555-C-G ***
6200112-C-A 6332071-C-A IR3_Dst ***
6200102-C-A 6332061-C-A IR3_Dst ***
6200099-C-A 6332058-C-A IR3_Dst ***
5479874-G-A 5611833-G-A ***
5441269-G-T 5573228-G-T ***
5441261-G-A 5573220-G-A ***
4843273-G-A 4975232-G-A ***
22273748-A-T 20111862-A-T DYZ19 ***
22341725-C-T 20179839-C-T DYZ19 ***
20544039-G-A 18382153-G-A P5_Dst ***
22234368-TC-GA 20072482-TC-GA DYZ19 ***
59007963-A-ACAAACAAAC 56861816-A-ACAAACAAAC ***
58910219-ATTCCATTCC-A 56680642-TGGAATGGAA-T ***
22358737-A-T 20196851-A-T DYZ19 ***
22355223-C-T 20193337-C-T DYZ19 ***
22349435-C-G 20187549-C-G FGC15913 DYZ19 ***
22342731-G-C 20180845-G-C DYZ19 ***
19740992-C-A 17629112-C-A P5_Prx 24×A***
22245071-G-ACT 20083185-G-ACT DYZ19 ***
22245066-AT-A 20083180-AT-A DYZ19 ***
22245077-G-A 20083191-G-A DYZ19 ***
19610124-C-T 17498244-C-T P5_Prx 32×T***
13876452-G-A 11755746-G-A ***
58877098-AG-TC 56713772-CT-GA ***
22234333-TAT-AA 20072447-TAT-AA DYZ19 ***
22366651-T-G 20204765-T-G DYZ19 ***
22480676-C-G 20318790-C-G DYZ19 ***
22360572-C-G 20198686-C-G DYZ19 ***
22343552-C-T 20181666-C-T DYZ19 ***
22234374-C-T 20072488-C-T DYZ19 ***
20466556-C-A 18304670-C-A P5_Dst ***
10090772-G-A 10253163-G-A ***
10090770-T-A 10253161-T-A ***
22263779-G-A 20101893-G-A DYZ19 ***
22257128-ACTGT-GCTGC 20095242-ACTGT-GCTGC DYZ19 ***
22256931-GTGG-TTGT 20095045-GTGG-TTGT DYZ19 ***
22256922-TTC-GTG 20095036-TTC-GTG DYZ19 ***
13701958-CAAAAGGAATT-GAAATATAATA 11546282-CAAAAGGAATT-GAAATATAATA ***
22422023-A-T 20260137-A-T DYZ19 ***
20544069-C-T 18382183-C-T P5_Dst ***
13485134-C-T 11329458-C-T ***
26325360-T-A 24179213-T-A FGC18808 P1_Y1 ***
10015017-A-G 10177408-A-G ***
22342856-G-C 20180970-G-C DYZ19 ***
26180029-T-C 24033882-T-C P1_Y1 ***
22289732-GTC-ATA 20127846-GTC-ATA DYZ19 ***
58870538-C-G 56720333-G-C ***
22289787-T-G 20127901-T-G DYZ19 ***
22256951-A-T 20095065-A-T DYZ19 ***
58876306-ATTGC-TTTGT 56714561-GCAAT-ACAAA ***
22457243-ACAGCACTTTAAGGTGT-TCAGAAATGAAAGATGC 20295357-ACAGCACTTTAAGGTGT-TCAGAAATGAAAGATGC DYZ19 ***
22341656-GAAG-CAAC 20179770-GAAG-CAAC DYZ19 ***
22421536-C-T 20259650-C-T DYZ19 ***
22355074-C-A 20193188-C-A DYZ19 ***
22341728-T-G 20179842-T-G DYZ19 ***
22250063-A-G 20088177-A-G DYZ19 ***
9524052-T-C 9686443-T-C ***
22273631-G-T 20111745-G-T DYZ19 ***
58909152-A-G 56681719-T-C ***
22273615-A-C 20111729-A-C DYZ19 ***
22342845-ATC-GTT 20180959-ATC-GTT DYZ19 ***
22234424-CTCT-GTCA 20072538-CTCT-GTCA DYZ19 ***
22248698-A-C 20086812-A-C DYZ19 ***
22234445-A-G 20072559-A-G DYZ19 ***
22234400-T-G 20072514-T-G DYZ19 ***
20537986-C-A 18376100-C-A P5_Dst ***
20537954-G-C 18376068-G-C P5_Dst ***
13256206-G-A 11100530-G-A FGC29766 ***
22421522-T-C 20259636-T-C DYZ19 ***
22341715-A-G 20179829-A-G DYZ19 ***
22236364-T-C 20074478-T-C DYZ19 ***
22226684-A-G 20064798-A-G DYZ19 ***
13467585-G-C 11311909-G-C ***
59006823-AAAAT-CACAC 56860676-AAAAT-CACAC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Uncertain Mutations

NGS tests don't always cover all of the Y chromosome and, even when they do, the results can be inconclusive. The following mutations don't have clear results and have been assumed to be positive or negative. For those mutations that are assumed to be positive, the assumed SNP/INDEL will likely be found on the tree in some upstream block. It is unclear if it should be placed upstream of your results or parallel to them. The situation is reversed for mutations assumed negative. Those SNPs/INDELs will likely be found on a parallel branch on the tree, and it is unclear if they should be positioned upstream. As more results come in, the ambiguity may resolve itself, or it may be necessary to consult the BAM file for your test (available from FamilyTreeDNA or FullGenomes Corp) or by direct SNP testing (Sanger Sequencing - YSEQ or FamilyTreeDNA).

SNPs/INDELs:

BlockRegionPOS-REF-ALT (hg19)POS-REF-ALT (hg38)NamesNotes
- Uncertain, but assumed positive.
- Uncertain, but assumed positive.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
Taylor1324141011-14121212141331189-1011112515193015-15-17-17111219-241515181736-37121212915-1681010810101223-231610121216811222113121113111112123415916122626211211131211913121011113012122413101020151914241712162412251810141791111

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 6MVR8*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs32
Variant counts last updated 2019-10-11 02:49:26.

* BED data not available. Using default values.


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