Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > Y2:34105-T-C > FGC5780 > L658 > FGC5757

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
G5VPS
8781627-T-C 8913586-T-C Y133889 FGC73531 YY+
21465397-T-C 19303511-T-C Y133844 FGC73540 YY+
16826550-A-G 14714670-A-G Y133896 FGC73536 YY+
18698395-A-C 16586515-A-C Y133879 FGC73538 YY+
15064787-T-C 12952879-T-C Y133884 FGC73533 YY+
18989367-G-T 16877487-G-T FGC73539 Y133866 Y+
16190953-C-A 14079073-C-A Y133911 FGC73534 YY+
16672058-A-G 14560178-A-G FGC73535 Y133873 YY+
24402798-T-G 22256651-T-G Y133872 FGC73542 +
13672495-A-T 11516819-A-T Y133870 FGC73532 +
3428774-A-G 3560733-A-G FGC73530 Y133858 +
18381216-G-A 16269336-G-A FGC73537 P6_Prx *
4974043-AT-A 5106002-AT-A *
5374969-CAAT-C 5506928-CAAT-C *
27503694-T-C 25357547-T-C FGC73543 P1_Y2 *
5014977-C-T 5146936-C-T **
3458724-A-T 3590683-A-T **
21998588-G-A 19836702-G-A **
19099937-A-G 16988057-A-G **
7758720-CTTTT-C 7890679-CTTTT-C 17×T**
3458683-C-T 3590642-C-T **
6498945-C-T 6630904-C-T **
28507966-G-A 26361819-G-A **
4228970-G-A 4360929-G-A **
7576240-T-C 7708199-T-C **
2672425-T-C 2804384-T-C **
2698564-A-C 2830523-A-C **
22690583-G-A 20528697-G-A **
59016773-C-T 56870626-C-T **
2698561-C-T 2830520-C-T **
59011613-C-T 56865466-C-T **
2672424-T-C 2804383-T-C **
13428987-A-G 11273311-A-G **
17920941-CAAAAAAAAAAAAAAAAAA-C 15809061-CAAAAAAAAAAAAAAAAAA-C 45×A**
59010820-C-A 56864673-C-A **
4265253-G-GGA 4397212-G-GGA **
59000107-A-G 56853960-A-G **
14631399-T-A 12519468-T-A **
22803996-T-A 20642110-T-A FGC11038 **
15507539-A-AACAC 13395659-A-AACAC 16×AC**
10019221-C-A 10181612-C-A **
59010794-T-C 56864647-T-C **
7832170-CTCTTTCTT-C 7964129-CTCTTTCTT-C 12×TCTT**
13447434-G-A 11291758-G-A **
23838135-G-A 21676249-G-A **
21998732-T-C 19836846-T-C ***
14213317-T-A 12092611-T-A ***
21887636-G-A 19725750-G-A ***
22001464-C-A 19839578-C-A ***
22195001-A-C 20033115-A-C ***
22270365-C-A 20108479-C-A DYZ19 ***
22270375-G-T 20108489-G-T DYZ19 ***
16080562-G-A 13968682-G-A ***
14134977-G-T 12014271-G-T ***
22431277-C-A 20269391-C-A DYZ19 ***
22489102-A-G 20327216-A-G DYZ19 ***
22623508-A-T 20461622-A-T ***
14631391-A-C 12519460-A-C ***
14119312-T-C 11998606-T-C ***
22989195-T-G 20827309-T-G ***
23121211-C-G 20959325-C-G ***
23320539-G-C 21158653-G-C ***
13517520-G-T 11361844-G-T ***
23441412-T-A 21279526-T-A ***
23773729-T-G 21611843-T-G ***
14631348-T-C 12519417-T-C ***
20648369-G-T 18486483-G-T P4_Prx ***
21391518-A-T 19229632-A-T ***
14631957-T-C 12520026-T-C ***
15797114-C-T 13685234-C-T ***
16994947-T-G 14883067-T-G ***
17249840-C-T 15137960-C-T ***
15797097-G-A 13685217-G-A ***
17641243-T-A 15529363-T-A ***
17699305-T-A 15587425-T-A ***
17999009-G-A 15887129-G-A P7_Gap ***
18527072-A-T 16415192-A-T P6_Dst ***
18622789-T-A 16510909-T-A ***
15233128-G-T 13121214-G-T ***
18844121-G-A 16732241-G-A ***
18844181-A-T 16732301-A-T ***
20895000-G-T 18733114-G-T P4_Dst ***
18849091-T-C 16737211-T-C ***
18902351-C-T 16790471-C-T ***
14631955-T-C 12520024-T-C ***
19099886-A-G 16988006-A-G ***
19099912-C-T 16988032-C-T ***
14631943-A-G 12520012-A-G ***
19662986-C-T 17551106-C-T P5_Prx ***
20243996-A-T 18082110-A-T P5_Dst ***
20420491-T-C 18258605-T-C P5_Dst ***
16382899-T-C 14271019-T-C ***
20707895-T-G 18546009-T-G P4_Prx ***
13142934-C-T 10632420-C-T ***
24339425-A-C 22193278-A-C P3_t1 ***
24069436-A-G 21923289-A-G P3_b1 ***
58875013-A-G 56715858-T-C ***
59024125-T-A 56877978-T-A ***
59021712-G-A 56875565-G-A ***
59018444-G-C 56872297-G-C ***
59016262-C-T 56870115-C-T ***
59009534-C-G 56863387-C-G ***
59009412-A-C 56863265-A-C ***
58875002-T-G 56715869-A-C ***
9923931-AATAGGTCTC-CATCGAACAG 10086322-AATAGGTCTC-CATCGAACAG ***
58869381-C-T 56721490-G-A ***
58869363-C-T 56721508-G-A ***
58862684-G-T 56728187-C-A ***
58848050-C-A 56742821-G-T ***
58844615-C-G 56746256-G-C ***
58844585-C-G 56746286-G-C ***
9923920-T-TC 10086311-T-TC ***
2672424-TT-CC 2804383-TT-CC ***
28385606-T-A 26239459-T-A P1_gr2 ***
9923910-TGAAA-GGAAG 10086301-TGAAA-GGAAG ***
58872540-CGATGC-TGAAGA 56718326-GCATCG-TCTTCA ***
24415718-T-TTATATA 22269571-T-TTATATA 31×TA***
19394060-T-TTTC 17282180-T-TTTC ***
18050048-A-AATATATATATATATATATAT 15938168-A-AATATATATATATATATATAT 19×AT***
13329877-GTA-ATAAT 11174201-GTA-ATAAT ***
9923956-TCCAC-ACCAA 10086347-TCCAC-ACCAA ***
8333626-ACTTCTTCTTCTTCTT-A 8465585-ACTTCTTCTTCTTCTT-A 25×CTT***
2698561-CGAA-TGAC 2830520-CGAA-TGAC ***
7832210-TTCTTTCTTTTTC-T 7964169-TTCTTTCTTTTTC-T ***
5797434-G-GATATAT 5929393-G-GATATAT 21×AT***
4265264-G-GAA 4397223-G-GAA ***
4265263-A-AGG 4397222-A-AGG ***
4265260-G-GAA 4397219-G-GAA ***
4265255-A-AGC 4397214-A-AGC ***
4265251-T-TGG 4397210-T-TGG ***
28524841-G-A 26378694-G-A ***
28237869-T-C 26091722-T-C P1_b4 ***
24078051-A-G 21931904-A-G P3_b1 ***
24637379-A-G 22491232-A-G P3_t2 ***
25534474-T-A 23388327-T-A P1_gr1 ***
25201529-A-T 23055382-A-T g1 ***
25100383-T-C 22954236-T-C g1 ***
24728393-C-T 22582246-C-T P3_b2 ***
24666659-A-C 22520512-A-C P3_b2 ***
24637412-T-G 22491265-T-G P3_t2 ***
24388147-C-A 22242000-C-A ***
25654119-G-A 23507972-G-A P1_b3 ***
13446611-A-T 11290935-A-T ***
24339344-T-A 22193197-T-A P3_t1 ***
24278582-A-T 22132435-A-T P3_b1 ***
24166953-A-G 22020806-A-G P3_b1 ***
24147702-A-T 22001555-A-T P3_b1 ***
24147610-A-C 22001463-A-C P3_b1 ***
24102104-A-G 21955957-A-G P3_b1 ***
25654072-T-C 23507925-T-C P1_b3 ***
25698364-C-T 23552217-C-T P1_b3 ***
27883259-A-C 25737112-A-C P1_Y2 ***
26928632-T-A 24782485-T-A P1_r3 ***
27595591-A-G 25449444-A-G P1_Y2 ***
27595548-T-G 25449401-T-G P1_Y2 ***
27436231-C-G 25290084-C-G P1_Y2 ***
27346784-A-T 25200637-A-T P1_g3 ***
27214105-G-T 25067958-G-T P1_g3 ***
27087411-C-T 24941264-C-T P1_r4 ***
26249425-T-A 24103278-T-A P1_Y1 ***
25815757-T-C 23669610-T-C P1_b3 ***
26248062-T-G 24101915-T-G P1_Y1 ***
26110484-G-A 23964337-G-A P1_Y1 ***
26032723-G-T 23886576-G-T P1_Y1 ***
26032625-T-C 23886478-T-C P1_Y1 ***
25997927-T-C 23851780-T-C P1_Y1 ***
25973841-C-G 23827694-C-G P1_Y1 ***
25944946-C-T 23798799-C-T P1_Y1 ***
13447232-C-T 11291556-C-T ***
9924005-A-T 10086396-A-T ***
13446610-C-G 11290934-C-G ***
13450069-TTCCA-CTCCT 11294393-TTCCA-CTCCT ***
13452538-C-T 11296862-C-T ***
22287462-TAG-CAA 20125576-TAG-CAA DYZ19 ***
58979208-CGT-TTA 56833061-CGT-TTA ***
13868585-GA-CG 11747879-GA-CG ***
58979621-ATAACC-A 56833474-ATAACC-A ***
13451679-TACTT-AACTC 11296003-TACTT-AACTC ***
58979629-C-T 56833482-C-T ***
13140455-AT-GC 10629941-AT-GC ***
9923873-G-A 10086264-G-A ***
58885068-T-C 56705803-A-G ***
22989187-T-G 20827301-T-G ***
22287292-CA-AT 20125406-CA-AT DYZ19 ***
58980039-CGCCATTCCA-TTCCTTTACT 56833892-CGCCATTCCA-TTCCTTTACT ***
58862633-C-G 56728238-G-C ***
9923940-C-G 10086331-C-G ***
22366228-GTTAC-TTTAA 20204342-GTTAC-TTTAA DYZ19 ***
22446145-GT-G 20284259-GT-G DYZ19 ***
13466302-TT-GA 11310626-TT-GA ***
3229154-CAAAAAAA-C 3361113-CAAAAAAA-C 20×A***
13868501-GAAA-TAAT 11747795-GAAA-TAAT ***
3082525-A-G 3214484-A-G ***
22366189-C-G 20204303-C-G DYZ19 ***
13868599-ACG-CGT 11747893-ACG-CGT ***
58972948-CGG-GTT 56826801-CGG-GTT ***
22366274-G-A 20204388-G-A DYZ19 ***
58884330-GTA-TTC 56706539-TAC-GAA ***
22366244-G-A 20204358-G-A DYZ19 ***
13868601-G-T 11747895-G-T ***
9577474-A-C 9739865-A-C IR3_Prx ***
13466283-A-G 11310607-A-G ***
28785760-CGGA-TGGT 26639613-CGGA-TGGT ***
28785739-A-T 26639592-A-T ***
58979660-CT-TA 56833513-CT-TA ***
5036583-CATATATATATATAT-C 5168542-CATATATATATATAT-C 27×AT***
13466303-T-A 11310627-T-A ***
9923914-A-G 10086305-A-G ***
13260905-C-A 11105229-C-A ***
13260848-T-G 11105172-T-G ***
10091418-A-C 10253809-A-C ***
4630151-T-TTG 4762110-T-TTG 18×TG***
13260863-T-G 11105187-T-G ***
28794959-TG-T 26648812-TG-T ***
4236304-A-AAT 4368263-A-AAT 9×AT***
59000266-C-T 56854119-C-T ***
58891065-G-A 56699806-C-T ***
58843388-G-T 56747483-C-A ***
58843385-G-A 56747486-C-T ***
58843384-T-G 56747487-A-C ***
13143076-T-C 10632562-T-C ***
58843260-C-A 56747611-G-T ***
22228067-G-A 20066181-G-A DYZ19 ***
59017991-G-A 56871844-G-A ***
13329879-A-AAT 11174203-A-AAT 25×AT***
59013336-C-T 56867189-C-T ***
9323280-G-A 9485671-G-A ***
59024598-T-C 56878451-T-C ***
59019670-T-C 56873523-T-C ***
59018568-C-A 56872421-C-A ***
59018069-G-A 56871922-G-A ***
59015764-G-C 56869617-G-C ***
59013018-G-A 56866871-G-A 10×A***
28253537-G-A 26107390-G-A P1_b4 ***
59012994-A-C 56866847-A-C ***
59008408-C-T 56862261-C-T ***
59000277-C-A 56854130-C-A ***
59000213-T-C 56854066-T-C ***
13261134-A-G 11105458-A-G ***
9824984-TAC-T 9987375-TAC-T 9×AC***
59018114-T-G 56871967-T-G ***
59019511-AAC-A 56873364-AAC-A 20×AC***
14297986-A-G 12177280-A-G ***
13429533-A-C 11273857-A-C ***
9669271-C-A 9831662-C-A IR3_Prx ***
9923934-A-C 10086325-A-C ***
9923886-G-T 10086277-G-T ***
9923869-C-G 10086260-C-G ***
9766768-A-G 9929159-A-G ***
9702702-T-C 9865093-T-C IR3_Prx ***
9674939-G-A 9837330-G-A IR3_Prx ***
9587932-C-G 9750323-C-G IR3_Prx ***
9923937-T-A 10086328-T-A ***
9577468-T-A 9739859-T-A IR3_Prx ***
9487395-G-T 9649786-G-T ***
9295988-C-G 9458379-C-G ***
9063348-A-T 9225739-A-T ***
8816176-A-C 8948135-A-C ***
7476583-A-C 7608542-A-C IR1_L ***
9923936-G-A 10086327-G-A ***
9923939-T-A 10086330-T-A ***
6683024-T-A 6814983-T-A ***
9947923-G-A 10110314-G-A ***
10066320-A-T 10228711-A-T ***
10021323-C-G 10183714-C-G ***
9947952-C-T 10110343-C-T ***
9947944-A-G 10110335-A-G ***
9947942-A-G 10110333-A-G ***
9947935-G-A 10110326-G-A ***
9947916-T-C 10110307-T-C ***
9923945-C-G 10086336-C-G ***
9947907-G-A 10110298-G-A FT49982 ***
24672340-A-G 22526193-A-G FGC40635 P3_b2 ***
9923999-A-C 10086390-A-C ***
9923974-A-C 10086365-A-C ***
9923960-C-A 10086351-C-A ***
9923956-T-A 10086347-T-A ***
6713815-T-G 6845774-T-G ***
6331639-G-C 6463598-G-C IR3_Dst ***
13141082-C-G 10630568-C-G ***
2698586-G-A 2830545-G-A ***
3635961-A-T 3767920-A-T ***
3603881-G-C 3735840-G-C ***
3460714-T-G 3592673-T-G ***
3460712-T-C 3592671-T-C ***
3460703-T-G 3592662-T-G ***
2773660-C-G 2905619-C-G ***
14610585-T-C 12498787-T-C ***
3808948-G-C 3940907-G-C ***
9923910-T-G 10086301-T-G ***
21096718-T-G 18934832-T-G ***
9923931-A-C 10086322-A-C ***
9923998-A-T 10086389-A-T ***
17276889-TA-T 15165009-TA-T 10×A***
14457387-CAAAAA-C 12336660-CAAAAA-C 18×A***
3650928-G-C 3782887-G-C ***
3873471-A-T 4005430-A-T ***
6250626-G-T 6382585-G-T IR3_Dst ***
6093645-T-C 6225604-T-C ***
6250446-T-G 6382405-T-G IR3_Dst ***
6188031-T-A 6319990-T-A IR3_Dst ***
6177140-C-T 6309099-C-T IR3_Dst ***
6155420-A-G 6287379-A-G IR3_Dst ***
6108526-A-T 6240485-A-T ***
6108500-C-G 6240459-C-G ***
6008799-T-A 6140758-T-A ***
3943237-T-A 4075196-T-A ***
5809783-T-C 5941742-T-C ***
4621357-A-C 4753316-A-C ***
4432069-A-T 4564028-A-T ***
4378779-C-G 4510738-C-G ***
4284831-T-C 4416790-T-C ***
4227002-A-T 4358961-A-T ***
4163414-C-T 4295373-C-T ***
59000265-AC-CT 56854118-AC-CT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: G5VPS1560498495143258395568
Used in age calculations1560498495143258395568
Counts of SNPs87
Variant counts last updated 2019-08-26 22:47:18.



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