Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > Z142/S211 > Z150 > 20815008-C-T

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
N76250
BigY2
N76250
22234181-A-T 20072295-A-T DYZ19 ***A*
13687596-G-C 11531920-G-C A*
26407769-G-T 24261622-G-T P1_Y1 ***A*
25958476-T-G 23812329-T-G P1_Y1 ***A*
25912331-C-A 23766184-C-A P1_Y1 ***A*
24294649-C-A 22148502-C-A P3_t1 ***A*
24290261-A-G 22144114-A-G P3_t1 ***A*
18288898-T-C 16177018-T-C P6_Prx ***A*
6309260-G-T 6441219-G-T IR3_Dst ***A*
19789086-G-T 17677206-G-T P5_Prx ***A*
13538-G-T +
17719312-G-T 15607432-G-T BY116918 YY++
19061483-CAGG-C 16949603-CAGG-C ++
21869577-C-T 19707691-C-T BY136055 YY++
22092388-G-C 19930502-G-C BY137561 YY++
22118216-G-A 19956330-G-A BY137767 YY++
23194693-A-C 21032807-A-C BY143722 Y++
22868125-A-G 20706239-A-G BY44146 YY++
23116049-T-A 20954163-T-A BY143042 YY++
23121732-C-T 20959846-C-T BY143119 YY++
17133607-T-C 15021727-T-C BY112544 YY++
23281461-C-T 21119575-C-T BY44182 YY++
23295494-C-T 21133608-C-T YY++
24465953-C-T 22319806-C-T BY150160 Y++
17352572-G-A 15240692-G-A BY114099 YY++
24376884-C-A 22230737-C-A BY149443 Y++
16436943-G-C 14325063-G-C BY107768 YY++
7865526-G-A 7997485-G-A BY68316 YY++
15739503-G-T 13627623-G-T BY103748 YY++
22463026-G-A 20301140-G-A b38:8377500-T-CBY16614 DYZ19 ++
2903835-CA-C 3035794-CA-C ++
3162216-C-G 3294175-C-G BY57478 ++
6844108-G-A 6976067-G-A YY+**
7417856-G-A 7549815-G-A Y13673 YY++
7729550-G-A 7861509-G-A BY67167 YY++
7790577-T-C 7922536-T-C BY67654 YY++
18935671-G-A 16823791-G-A BY124911 YY++
8583383-C-T 8715342-C-T BY74244 YY++
13818508-C-G 11697802-C-G BY90471 ++
9171152-G-C 9333543-G-C BY78783 Y**+
13827529-A-C 11706823-A-C BY90773 ++
15642506-T-C 13530626-T-C BY103048 Y++
22231174-T-C 20069288-T-C DYZ19 ****
15491941-GTATATATATATATATATATATATATATA-G 13380061-GTATATATATATATATATATATATATATA-G 19×TA**
15542635-A-T 13430755-A-T **
15648836-C-A 13536956-C-A **
15665721-AC-A 13553841-AC-A **
15677919-T-A 13566039-T-A **
15446749-C-A 13334869-C-A **
15714321-C-A 13602441-C-A **
15741723-T-C 13629843-T-C **
15742207-C-A 13630327-C-A **
15743593-A-G 13631713-A-G **
15785961-A-T 13674081-A-T **
15477264-C-T 13365384-C-T **
15201346-C-A 13089432-C-A **
15305660-C-A 13193759-C-A **
15221949-T-C 13110035-T-C **
15866074-G-A 13754194-G-A **
15179322-A-G 13067408-A-G **
15080622-T-C 12968712-T-C **
14965419-G-T 12853494-G-T **
14939810-C-A 12827884-C-A **
14925896-C-T 12813961-C-T **
14819680-T-C 12707747-T-C **
14810930-C-A 12699001-C-A **
14786290-C-A 12674360-C-A **
14785133-G-C 12673203-G-C **
14741928-C-T 12629996-C-T **
14720467-CCTGTAG-C 12608535-CCTGTAG-C **
15866071-G-A 13754191-G-A **
15943978-C-A 13832098-C-A **
15904034-C-A 13792154-C-A **
16666168-C-A 14554288-C-A **
17141744-T-C 15029864-T-C **
17030614-C-T 14918734-C-T **
17004551-T-G 14892671-T-G **
17338534-G-A 15226654-G-A **
17238396-T-G 15126516-T-G **
17222712-G-T 15110832-G-T **
17340834-A-G 15228954-A-G **
14573993-A-G 12462193-A-G **
17366899-C-A 15255019-C-A **
16702947-C-A 14591067-C-A **
16676651-A-G 14564771-A-G **
16675570-C-A 14563690-C-A **
17370786-G-T 15258906-G-T **
15921932-A-G 13810052-A-G **
17385258-C-A 15273378-C-A **
16575230-C-A 14463350-C-A **
17426231-C-A 15314351-C-A **
16484249-C-A 14372369-C-A **
16478300-C-A 14366420-C-A **
16467419-C-A 14355539-C-A **
16344833-CT-C 14232953-CT-C **
16258971-C-A 14147091-C-A **
16070210-G-A 13958330-G-A **
16052187-T-C 13940307-T-C **
16034172-C-CAA 13922292-C-CAA 10×A**
17215901-T-C 15104021-T-C **
14643745-C-A 12531814-C-A **
13999139-C-T 11878433-C-T **
14559807-T-C 12448008-T-C **
13238406-T-C 11082730-T-C **
13858394-G-T 11737688-G-T **
13821400-A-G 11700694-A-G **
11671482-C-T **
11653204-C-A **
11652273-A-G **
13701302-T-A 11545626-T-A **
13643373-C-T 11487697-C-T **
13626168-G-T 11470492-G-T **
13571653-C-G 11415977-C-G **
13486838-C-A 11331162-C-A **
13313697-C-A 11158021-C-A **
13238411-G-T 11082735-G-T **
13238404-G-A 11082728-G-A **
13895801-C-A 11775095-C-A **
13238397-T-G 11082721-T-G **
13238389-T-C 11082713-T-C **
13214015-C-A 11058339-C-A **
11031879-C-A **
11009799-C-T **
11009181-A-G **
10988306-C-A **
10979618-C-A **
10967869-A-G **
10955308-T-A **
10947923-C-A **
10940181-C-A **
13882863-G-T 11762157-G-T **
13895832-A-G 11775126-A-G **
14556560-T-A 12444761-T-A **
14123039-TAATTAGCCATTCATG-T 12002333-TAATTAGCCATTCATG-T **
14522394-G-A 12410595-G-A **
14506738-A-G 12394943-A-G **
14491029-A-G 12370298-A-G **
14479687-C-A 12358956-C-A **
14474588-T-C 12353857-T-C **
14436529-G-T 12315802-G-T **
14405002-CCTTTATTAGTAAG-C 12284299-CCTTTATTAGTAAG-C **
14376583-T-A 12255879-T-A **
14357718-A-C 12237013-A-C **
14295686-T-A 12174980-T-A **
14188059-C-A 12067353-C-A **
14183391-G-A 12062685-G-A **
14093639-C-A 11972933-C-A M4271 **
13921085-C-A 11800379-C-A **
14077890-C-A 11957184-C-A **
14024975-A-G 11904269-A-G **
14022032-A-T 11901326-A-T **
14000575-A-G 11879869-A-G **
14000085-CAGTGCATTTACA-C 11879379-CAGTGCATTTACA-C **
17464792-C-A 15352912-C-A **
13984085-G-A 11863379-G-A **
13981599-C-A 11860893-C-A **
13976891-A-G 11856185-A-G **
13963435-A-G 11842729-A-G **
13926617-C-A 11805911-C-A **
13922915-A-C 11802209-A-C **
13922787-G-T 11802081-G-T **
17459522-A-T 15347642-A-T **
19271581-C-G 17159701-C-G **
17562017-A-G 15450137-A-G **
23034354-G-A 20872468-G-A Z32038 **
23609990-C-A 21448104-C-A **
23609969-C-G 21448083-C-G **
23579197-C-A 21417311-C-A **
23552626-C-A 21390740-C-A **
23537497-C-A 21375611-C-A **
23439043-A-C 21277157-A-C **
23412006-T-A 21250120-T-A **
23411328-C-A 21249442-C-A **
23345836-C-A 21183950-C-A **
23142500-C-A 20980614-C-A **
23062940-AGAG-A 20901054-AGAG-A **
23045328-C-A 20883442-C-A **
23016846-G-T 20854960-G-T **
23808521-C-A 21646635-C-A **
22954587-T-C 20792701-T-C **
22851367-A-T 20689481-A-T **
22849526-C-T 20687640-C-T **
22849517-A-G 20687631-A-G **
22820422-T-G 20658536-T-G **
22801806-C-G 20639920-C-G **
22793939-C-A 20632053-C-A **
22774891-CC-T 20613005-CC-T **
22739643-G-A 20577757-G-A **
22561415-C-A 20399529-C-A **
22420217-T-A 20258331-T-A DYZ19 **
22281797-T-C 20119911-T-C DYZ19 **
23789605-C-G 21627719-C-G **
23818365-T-C 21656479-T-C **
22253045-G-A 20091159-G-A DYZ19 **
28610346-C-A 26464199-C-A **
56870309-C-A **
56867097-G-T **
56857601-C-T **
56850889-G-T **
56850743-C-A **
56848369-A-G **
56838408-C-G **
56734792-A-G **
28781500-T-G 26635353-T-G **
28767865-C-T 26621718-C-T **
28722287-A-G 26576140-A-G **
28610467-A-C 26464320-A-C **
28547524-C-A 26401377-C-A **
23832988-A-G 21671102-A-G **
28537148-C-A 26391001-C-A **
28502480-G-T 26356333-G-T **
28468847-T-A 26322700-T-A **
28385852-T-C 26239705-T-C P1_gr2 **
26563899-AG-A 24417752-AG-A P1_g2 **
25995492-G-GTATA 23849345-G-GTATA P1_Y1 24×TA**
25246417-C-T 23100270-C-T P2_r1 **
24600446-T-C 22454299-T-C BY226105 P3_t2 **
24517976-C-A 22371829-C-A **
24450603-G-A 22304456-G-A **
24415706-T-C 22269559-T-C **
24240797-C-G 22094650-C-G P3_b1 **
21752074-A-G **
22253050-T-G 20091164-T-G DYZ19 **
22253034-G-A 20091148-G-A DYZ19 **
17562026-A-G 15450146-A-G **
19012449-C-A 16900569-C-A **
19509804-C-A 17397924-C-A **
19469893-C-A 17358013-C-A **
19359876-A-G 17247996-A-G **
19356342-A-T 17244462-A-T **
19338197-C-A 17226317-C-A **
19330410-A-T 17218530-A-T **
19298337-G-T 17186457-G-T **
10937779-C-A **
19255497-C-A 17143617-C-A **
19132577-A-G 17020697-A-G **
19078474-C-A 16966594-C-A **
19073324-G-T 16961444-G-T **
19009372-A-G 16897492-A-G **
19567123-C-A 17455243-C-A **
18965007-G-C 16853127-G-C **
18964116-C-A 16852236-C-A **
18892127-T-C 16780247-T-C **
18857587-TTTTG-T 16745707-TTTTG-T **
18564361-C-T 16452481-C-T **
18491692-T-A 16379812-T-A P6_Dst **
18244516-C-A 16132636-C-A **
18090179-A-G 15978299-A-G **
17961081-C-A 15849201-C-A **
17952733-C-A 15840853-C-A **
17842365-C-A 15730485-C-A **
17674622-T-G 15562742-T-G **
17628782-TA-T 15516902-TA-T **
19520854-A-C 17408974-A-C **
20334840-G-T 18172954-G-T P5_Dst **
22191620-A-T 20029734-A-T **
21635332-G-T 19473446-G-T **
22123193-T-A 19961307-T-A **
22122257-C-A 19960371-C-A **
22100809-G-A 19938923-G-A **
22085399-C-A 19923513-C-A **
21975360-C-A 19813474-C-A **
21974968-A-T 19813082-A-T **
21926528-C-G 19764642-C-G **
21902085-G-A 19740199-G-A **
21839998-A-T 19678112-A-T **
21714649-T-C 19552763-T-C **
21703116-C-A 19541230-C-A **
21663241-T-G 19501355-T-G **
21629519-T-G 19467633-T-G **
21073358-G-T 18911472-G-T **
21467807-C-A 19305921-C-A **
21427015-A-G 19265129-A-G **
21391490-T-C 19229604-T-C **
21368864-C-A 19206978-C-A **
21367316-C-G 19205430-C-G **
21353278-C-A 19191392-C-A **
21323745-G-T 19161859-G-T **
21269421-G-T 19107535-G-T **
21207621-T-A 19045735-T-A **
21182421-G-A 19020535-G-A **
21182419-G-A 19020533-G-A **
21146344-C-A 18984458-C-A **
21141499-A-T 18979613-A-T **
10937802-T-C **
14938628-TG-T 12826703-TG-T **
10937766-T-TCCC **
4401979-G-A 4533938-G-A **
5264600-G-A 5396559-G-A **
5217760-G-T 5349719-G-T **
5116431-G-A 5248390-G-A **
5110091-G-T 5242050-G-T **
5110020-G-A 5241979-G-A **
5060277-T-C 5192236-T-C **
5035508-G-T 5167467-G-T **
5000579-T-C 5132538-T-C **
4707202-C-A 4839161-C-A **
4531888-C-A 4663847-C-A **
4490031-C-T 4621990-C-T **
4370703-G-T 4502662-G-T **
5398546-A-AT 5530505-A-AT 9×T**
4357484-C-A 4489443-C-A **
4356979-C-A 4488938-C-A **
4187414-G-T 4319373-G-T **
4144186-C-A 4276145-C-A **
4063625-G-T 4195584-G-T **
4002252-C-A 4134211-C-A **
3952046-G-T 4084005-G-T **
3948574-G-T 4080533-G-T **
3847345-C-A 3979304-C-A **
3817929-C-A 3949888-C-A **
3777186-C-T 3909145-C-T **
3768048-G-T 3900007-G-T **
5313469-C-A 5445428-C-A **
5449867-A-T 5581826-A-T **
3732209-A-T 3864168-A-T **
6222966-T-C 6354925-T-C IR3_Dst **
6967853-C-A 7099812-C-A **
6910558-T-C 7042517-T-C **
6868815-A-G 7000774-A-G **
6784332-G-A 6916291-G-A **
6648707-C-A 6780666-C-A **
6510569-T-C 6642528-T-C **
6407816-G-T 6539775-G-T **
6384261-T-TA 6516220-T-TA **
6384259-T-A 6516218-T-A **
6384250-A-G 6516209-A-G **
6359132-A-G 6491091-A-G **
6329467-C-A 6461426-C-A IR3_Dst **
6144859-T-A 6276818-T-A IR3_Dst **
5580795-G-T 5712754-G-T **
6060761-C-A 6192720-C-A **
10937764-T-TG **
5948992-G-A 6080951-G-A **
5911458-A-G 6043417-A-G **
5839419-ATT-A 5971378-ATT-A **
5826851-C-A 5958810-C-A **
5760361-A-C 5892320-A-C **
5760323-G-T 5892282-G-T **
5760246-A-C 5892205-A-C **
5713046-C-A 5845005-C-A **
5650464-C-A 5782423-C-A **
5596753-G-A 5728712-G-A **
3759161-C-G 3891120-C-G **
3364746-C-A 3496705-C-A **
7116780-C-A 7248739-C-A **
7243136-C-A 7375095-C-A **
10964729-A-C **
7048031-C-A 7179990-C-A **
7391791-C-A 7523750-C-A **
10693335-C-A **
56857603-T-TAAAA 11×A**
8379583-G-C 8511542-G-C **
10889560-T-C **
28781363-C-A 26635216-C-A **
28465847-C-A 26319700-C-A **
7255019-C-A 7386978-C-A **
16531082-T-A 14419202-T-A **
7106287-C-A 7238246-C-A **
7416647-C-A 7548606-C-A **
2665861-C-A 2797820-C-A **
21175649-T-A 19013763-T-A **
13474849-C-A 11319173-C-A **
6694217-C-A 6826176-C-A **
7269673-A-G 7401632-A-G **
11674564-CAATGG-C **
22468546-C-A 20306660-C-A DYZ19 *****
22425596-C-T 20263710-C-T DYZ19 *****
9371553-C-T 9533944-C-T **
13965268-TCAAA-T 11844562-TCAAA-T **
59008693-C-T 56862546-C-T **
19013354-G-C 16901474-G-C Z27233 **
2888869-TCAA-T 3020828-TCAA-T **
10967569-A-T **
3337312-G-A 3469271-G-A **
14413233-AC-A 12292530-AC-A **
3202726-A-T 3334685-A-T **
3166399-C-A 3298358-C-A **
3158270-G-T 3290229-G-T **
3156517-G-T 3288476-G-T **
2852431-C-A 2984390-C-A **
2767987-G-T 2899946-G-T **
2763695-G-A 2895654-G-A **
2702239-C-A 2834198-C-A **
2665510-A-G 2797469-A-G **
10864463-CCATTT-C **
8230280-C-A 8362239-C-A **
8728250-C-A 8860209-C-A FT34010 **
10912011-G-A **
15057272-C-A 12945364-C-A **
15168464-C-A 13056550-C-A **
7166587-C-A 7298546-C-A **
18447574-C-A 16335694-C-A P6_Dst **
21459990-C-A 19298104-C-A **
6464866-C-A 6596825-C-A **
22041575-C-A 19879689-C-A **
6510561-C-A 6642520-C-A **
10937715-C-T **
17597188-C-T 15485308-C-T **
8776571-TA-T 8908530-TA-T **
10972249-C-A **
56848787-C-T **
7101115-C-A 7233074-C-A **
5948996-T-A 6080955-T-A **
10937749-TTAC-T **
10629057-C-A **
10748015-C-CA **
10747061-G-T **
10688572-C-A **
10668274-C-A **
10667788-T-C **
7199548-C-A 7331507-C-A **
10658721-A-T **
10657095-C-A **
10653107-CCG-C **
10629108-A-ATTCT **
10629098-A-ACTCAATTCCT **
10629043-A-C **
10757411-A-C **
10629036-C-T **
10028431-G-A 10190822-G-A **
10023084-T-G 10185475-T-G **
10023018-C-A 10185409-C-A **
10013846-C-A 10176237-C-A **
10003140-C-A 10165531-C-A **
9996130-A-G 10158521-A-G **
9962092-C-A 10124483-C-A **
9807893-C-A 9970284-C-A **
9804899-A-T 9967290-A-T **
9670001-T-C 9832392-T-C IR3_Prx **
10748016-C-CATTG **
10757414-C-A **
9465242-C-A 9627633-C-A **
10882875-C-A **
15951998-G-A 13840118-G-A Z12456 **
10937746-A-ATTCATGTC **
10937727-C-A **
10929428-A-T **
10928851-C-T **
10919802-C-A **
10901429-C-A **
10899318-C-A **
10889652-C-T **
10887078-C-A **
10882935-C-G **
10873372-C-A **
10764346-C-A **
10845792-T-C **
10845288-C-A **
10838141-G-T **
10805859-T-A **
10801427-A-G **
10796508-T-C **
10796442-A-C **
10790522-C-A **
10787655-G-T **
10771694-C-A **
10768076-C-A **
9564509-C-CTA 9726900-C-CTA IR3_Prx 9×TG**
10665694-T-C **
7409411-G-A 7541370-G-A **
7462617-C-A 7594576-C-A IR1_L **
8030030-TAAAAAAA-T 8161989-TAAAAAAA-T 26×A**
7776480-C-A 7908439-C-A **
7695830-C-A 7827789-C-A **
7640955-C-A 7772914-C-A **
7235897-A-G 7367856-A-G **
7615231-G-T 7747190-G-T **
7409792-T-C 7541751-T-C **
8075306-G-T 8207265-G-T **
9446295-C-A 9608686-C-A **
7252196-C-A 7384155-C-A **
7390601-A-G 7522560-A-G **
7330223-C-A 7462182-C-A **
7325676-C-A 7457635-C-A **
7319354-T-C 7451313-T-C **
7321490-C-G 7453449-C-G **
8072278-A-T 8204237-A-T **
7867030-C-A 7998989-C-A **
9304924-A-G 9467315-A-G **
9063214-G-T 9225605-G-T **
9442699-A-G 9605090-A-G **
9304920-C-A 9467311-C-A **
8353295-T-C 8485254-T-C **
8987728-A-T 9150119-A-T **
8746325-T-A 8878284-T-A **
9057196-A-G **
7221713-A-G 7353672-A-G **
9118321-G-T **
9424598-G-A 9586989-G-A 16×A**
9418963-A-C 9581354-A-C **
8398895-T-C 8530854-T-C ******
4770400-G-T 4902359-G-T ***
17140601-T-A 15028721-T-A ***
56858262-G-T ***
24433089-G-T 22286942-G-T ***
10951693-T-C ***
24636349-CTTTTTTT-C 22490202-CTTTTTTT-C P3_t2 17×T***
21673079-C-A 19511193-C-A ***
9784741-G-A 9947132-G-A ***
16422190-C-A 14310310-C-A ***
16016721-TACAC-T,TAC 13904841-TACAC-T,TAC 17×AC***
10859447-T-C ***
10921078-C-A ***
16078333-C-A 13966453-C-A Y35357 ***
16311995-T-C 14200115-T-C ***
25095778-T-C 22949631-T-C g1 ***
56835169-A-G,T ***
13480397-C-G 11324721-C-G ***
22249756-G-A 20087870-G-A DYZ19 ***
10935611-C-A,T ***
22449976-A-T 20288090-A-T DYZ19 ***
16275746-A-G 14163866-A-G ***
24826083-T-G 22679936-T-G P3_b2 ***
13447122-C-T 11291446-C-T BY49647 ***
22312650-C-G 20150764-C-G DYZ19 ***
28547274-C-A 26401127-C-A ***
28544797-C-A 26398650-C-A ***
25097446-A-C 22951299-A-C g1 ***
25869914-ATATC-A 23723767-ATATC-A P1_Y1 ***
26350330-G-A 24204183-G-A P1_Y1 ***
7234881-C-A 7366840-C-A ***
16720402-G-T 14608522-G-T ***
10038969-G-A 10201360-G-A ***
17289677-A-G 15177797-A-G ***
4215578-G-T 4347537-G-T ***
23587528-C-T 21425642-C-T ***
21547859-CTGTGTG-C,CTG 19385973-CTGTGTG-C,CTG 17×TG***
10929577-C-A ***
7947674-G-GT 8079633-G-GT ***
8013429-C-A 8145388-C-A ***
18191884-A-G 16080004-A-G ***
15332178-G-A 13220296-G-A ***
8293978-G-GAA 8425937-G-GAA 10×A***
18749041-G-A 16637161-G-A ***
18806044-CTTTTT-C,CTT 16694164-CTTTTT-C,CTT 19×T***
10911971-T-G ***
21436019-C-A 19274133-C-A ***
9028379-C-A 9190770-C-A ***
9042516-A-G 9204907-A-G ***
9328991-C-A 9491382-C-A ***
14604676-C-A 12492878-C-A ***
4088229-C-T 4220188-C-T ***
19523429-G-T 17411549-G-T ***
7780759-C-A 7912718-C-A ***
10911965-T-C ***
13466427-C-A,G 11310751-C-A,G ***
22962435-G-GT 20800549-G-GT ***
14825125-CT-C,CTT 12713192-CT-C,CTT 20×T***
13466580-C-A 11310904-C-A ***
13480926-A-G 11325250-A-G ***
4100904-T-C 4232863-T-C ***
13483301-C-G,T 11327625-C-G,T ***
10839112-C-A ***
13644865-T-C 11489189-T-C ***
11645990-C-T ***
10911962-T-G ***
17424954-A-G 15313074-A-G ***
11676390-CA-C ***
10777163-C-A FGC78550 ***
17851692-C-A 15739812-C-A ***
13859289-C-A 11738583-C-A ***
17478430-C-A 15366550-C-A ***
10759944-GCATTC-G ***
10647752-C-A ***
7136914-T-G 7268873-T-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N762501038931874771117548109
Kit: N76250932324675834697499438
Used in age calculations1038931875834697548109
Counts of SNPs2322
Variant counts last updated 2019-07-03 01:05:38.



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