Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > Z2573

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
406669
BigY2
406669
25870429-C-T 23724282-C-T P1_Y1 ***A*
22309954-C-T 20148068-C-T BY217083 DYZ19 ***A*
25985023-C-T 23838876-C-T P1_Y1 ***A*
18340087-G-T 16228207-G-T P6_Prx ***A*
19890877-G-A 17778997-G-A P5_Prx ***A*
19794807-G-T 17682927-G-T P5_Prx ***A*
8481656-C-G 8613615-C-G Y130727 YY++
23346284-C-T 21184398-C-T BY144727 YY++
23244012-G-A 21082126-G-A Y130689 YY++
22572057-T-C 20410171-T-C Y130572 YY++
14368818-AG-A 12248114-AG-A ++
22568072-T-C 20406186-T-C Y130739 YY++
22526330-CAA-C 20364444-CAA-C ++
22472046-T-C 20310160-T-C BY222702 DYZ19 ++
13837815-A-T 11717109-A-T Y130762 ++
14159038-T-A 12038332-T-A Y130633 YY++
15442170-C-A 13330290-C-A Y130707 YY++
16235781-C-G 14123901-C-G Y130626 YY++
15201158-T-G 13089244-T-G Y130822 YY++
15463121-T-C 13351241-T-C Y130537 YY++
8085119-G-A 8217078-G-A Y130656 YY++
16900156-A-G 14788276-A-G Y130745 YY++
17153008-A-G 15041128-A-G Y130604 YY++
17443273-A-G 15331393-A-G Y130607 YY++
18178550-GA-G 16066670-GA-G +***
18722739-T-C 16610859-T-C Y130652 YY++
18865659-A-C 16753779-A-C Y130588 YY++
18873137-A-T 16761257-A-T Y130700 YY++
19212522-G-T 17100642-G-T Y130582 YY++
8385642-G-A 8517601-G-A Y130605 YY++
8353795-A-C 8485754-A-C Y130630 YY++
7776732-TC-T 7908691-TC-T ++
6367018-CT-C 6498977-CT-C ++
19230189-G-A 17118309-G-A FGC59204 YY++
7750676-A-G 7882635-A-G Y130612 YY+**
7235-C-A +
13703255-T-C 11547579-T-C BY3402 +
3347149-C-T 3479108-C-T BY53505 **+
3609955-A-T 3741914-A-T BY57738 **+
6732835-AC-A 6864794-AC-A ++
7321344-C-A 7453303-C-A Y130779 YY++
7455018-C-T 7586977-C-T BY65275 IR1_L ***+
7665944-C-A 7797903-C-A BY66663 YY++
21864337-T-C 19702451-T-C M11624 YY++
3719199-G-A 3851158-G-A ****
13664878-T-TGAATG 11509202-T-TGAATG *
22288385-A-C 20126499-A-C DYZ19 ****
22431061-C-T 20269175-C-T DYZ19 ****
10753627-T-A **
9956076-C-A 10118467-C-A **
10753546-C-G **
10752940-C-T **
9825016-C-A 9987407-C-A **
9852770-G-A 10015161-G-A **
22101031-T-A 19939145-T-A **
10014073-T-C 10176464-T-C **
10039820-G-A 10202211-G-A **
10039834-T-A 10202225-T-A **
10068134-A-T 10230525-A-T **
10746271-T-A **
10670913-T-C **
10684223-C-T **
10692613-A-T **
10693544-T-G **
10770941-C-T **
10766364-C-G **
5767632-CA-C 5899591-CA-C **
10770959-T-G **
10846649-T-C **
10975525-C-A **
10960336-CCAG-C **
10904071-GGCA-G **
10904070-G-GAAT **
10904053-C-G **
10901576-C-A **
10895704-C-A **
10879794-T-A **
10856824-T-G **
10850099-C-A **
10850010-A-C **
10838075-A-G **
10770964-T-C **
10837439-G-C **
10835955-T-G **
10814751-C-G **
10814750-T-A **
10806682-A-T **
10800324-G-GC **
10797496-ACATTC-A **
9524288-A-T 9686679-A-T **
10781486-T-G **
10775761-T-C **
10770970-T-A **
10770967-T-A **
9602657-T-TA 9765048-T-TA IR3_Prx **
22122182-T-C 19960296-T-C **
9524274-C-CTA 9686665-C-CTA **
6284494-C-A 6416453-C-A IR3_Dst **
7145703-C-A 7277662-C-A **
7109400-T-G 7241359-T-G **
6926750-G-T 7058709-G-T **
6862047-A-T 6994006-A-T **
6592395-C-A 6724354-C-A **
6483603-C-A 6615562-C-A **
6452334-T-C 6584293-T-C **
6384440-C-T 6516399-C-T **
6365116-A-C 6497075-A-C **
6213744-C-A 6345703-C-A IR3_Dst **
7167698-G-T 7299657-G-T **
5974066-G-T 6106025-G-T **
5973140-A-T 6105099-A-T **
5894690-A-T 6026649-A-T **
5675602-G-T 5807561-G-T **
5663381-C-A 5795340-C-A **
5605856-C-A 5737815-C-A **
5498856-C-A 5630815-C-A **
5483013-C-A 5614972-C-A **
5461783-G-A 5593742-G-A **
7164621-A-G 7296580-A-G **
7269912-C-A 7401871-C-A **
9513489-G-T 9675880-G-T **
8746368-A-C 8878327-A-C **
9502553-A-C 9664944-A-C **
9493641-C-G 9656032-C-G **
9444796-C-A 9607187-C-A **
9420379-A-G 9582770-A-G Y130785 **
9116999-C-A 9279390-C-A **
8986056-C-A 9148447-C-A **
8981029-T-A 9143420-T-A **
8850468-G-T 8982427-G-T **
8746379-A-C 8878338-A-C **
8679365-G-T 8811324-G-T **
7299132-ACCC-A 7431091-ACCC-A **
8668412-G-T 8800371-G-T **
8279522-C-A 8411481-C-A **
10975527-T-TACG **
8072354-CT-C 8204313-CT-C **
8072338-A-C 8204297-A-C **
7756894-C-G 7888853-C-G **
7621932-G-A 7753891-G-A **
7474497-T-A 7606456-T-A IR1_L **
7385415-C-A 7517374-C-A **
7343540-T-A 7475499-T-A **
10975526-C-A **
14099812-C-A 11979106-C-A **
10975533-T-A **
17270727-C-A 15158847-C-A **
18119724-A-C 16007844-A-C **
18080513-T-A 15968633-T-A **
17923676-A-G 15811796-A-G **
21561408-C-A 19399522-C-A **
17829456-T-C 15717576-T-C **
17676374-A-T 15564494-A-T **
17455871-T-G 15343991-T-G **
17407788-A-G 15295908-A-G **
21580789-C-A 19418903-C-A **
17175158-G-T 15063278-G-T **
18379927-A-T 16268047-A-T P6_Prx **
17153402-T-G 15041522-T-G **
17153398-T-G 15041518-T-G **
17146567-TAAATATATAAATAAAAA-T 15034687-TAAATATATAAATAAAAA-T **
17061076-G-T 14949196-G-T **
16827562-A-G 14715682-A-G FT23017 **
16722264-T-A 14610384-T-A **
21625029-AT-A 19463143-AT-A **
16272386-A-T 14160506-A-T **
16245504-A-C 14133624-A-C **
18379909-A-T 16268029-A-T P6_Prx **
18379937-A-T 16268057-A-T P6_Prx **
16005428-A-T 13893548-A-T **
20050659-T-A 17938779-T-A P5_Prx **
21072792-C-A 18910906-C-A **
20998327-A-T 18836441-A-T P4_Dst **
20845217-A-T 18683331-A-T P4_Dst **
20845208-T-G 18683322-T-G P4_Dst **
20845205-A-T 18683319-A-T P4_Dst **
20845193-A-T 18683307-A-T P4_Dst **
20845185-A-T 18683299-A-T P4_Dst **
20845166-A-T 18683280-A-T P4_Dst **
20629834-T-TA 18467948-T-TA P4_Prx **
21212756-G-A 19050870-G-A **
18379955-A-T 16268075-A-T P6_Prx **
19339986-CTTTTTTTTTTTTTTTTTTTT-C 17228106-CTTTTTTTTTTTTTTTTTTTT-C 31×T**
19324141-G-T 17212261-G-T **
21308302-A-C 19146416-A-C **
21416497-A-C 19254611-A-C **
18865902-C-CA 16754022-C-CA 8×A**
18850321-A-T 16738441-A-T **
18625609-T-G 16513729-T-G **
18402416-G-A 16290536-G-A P6_Gap **
18389198-C-A 16277318-C-A P6_Gap **
16244927-C-A 14133047-C-A **
15921762-T-A 13809882-T-A **
10982471-T-A **
13478190-C-G 11322514-C-G **
13999175-C-G 11878469-C-G **
13894460-C-A 11773754-C-A **
13890880-C-A 11770174-C-A **
11672460-A-T **
11646232-G-T **
13723082-G-A 11567406-G-A **
13697333-C-G 11541657-C-G **
13593287-C-A 11437611-C-A **
13584780-G-T 11429104-G-T **
21911119-T-C 19749233-T-C **
5358845-C-A 5490804-C-A **
13255865-C-A 11100189-C-A **
13242421-C-A 11086745-C-A **
11034776-T-TCCCG **
11034774-C-CA **
11025160-G-A **
11000440-T-G **
10999631-AT-A **
10999617-C-T **
21915550-C-A 19753664-C-A **
14050000-T-G 11929294-T-G **
14146995-T-G 12026289-T-G **
15774460-C-A 13662580-C-A **
15138112-A-C 13026199-A-C **
15756580-C-A 13644700-C-A **
15749187-G-T 13637307-G-T **
15630108-G-T 13518228-G-T **
21743375-G-C 19581489-G-C **
15442793-C-A 13330913-C-A **
15424811-A-G 13312931-A-G **
15398793-G-T 13286913-G-T **
15280412-CCTGA-C 13168511-CCTGA-C **
15150848-A-C 13038935-A-C **
15137858-C-A 13025945-C-A **
14256280-G-T 12135574-G-T **
14741990-G-T 12630058-G-T **
14727310-A-T 12615378-A-T **
14727249-T-G 12615317-T-G **
21888753-G-C 19726867-G-C **
14622125-A-T 12510323-A-T **
14574545-A-G 12462745-A-G **
14552771-C-A 12440972-C-A **
14539635-G-A 12427836-G-A **
14495753-C-A 12383950-C-A **
14344021-A-T 12223316-A-T **
5393588-T-G 5525547-T-G **
4285249-G-A 4417208-G-A **
5322878-C-A 5454837-C-A **
6828434-C-A 6960393-C-A **
5188728-C-A 5320687-C-A **
14391645-C-T 12270941-C-T **
19436801-A-T 17324921-A-T **
5246724-C-A 5378683-C-A **
14765228-C-T 12653297-C-T **
28015801-A-AG 25869654-A-AG P1_Y2 **
21751285-G-T **
3535949-A-T 3667908-A-T **
3535944-C-G 3667903-C-G **
27497071-C-A 25350924-C-A P1_Y2 **
4687832-C-A 4819791-C-A **
23952515-A-C 21806368-A-C **
18138134-A-C 16026254-A-C **
22729934-C-A 20568048-C-A **
20535065-C-A 18373179-C-A P5_Dst **
24250858-G-GTA 22104711-G-GTA P3_b1 **
24044022-G-T 21897875-G-T **
28624554-C-A 26478407-C-A **
15128146-G-T 13016233-G-T **
16052788-T-A 13940908-T-A **
7487269-C-A 7619228-C-A IR1_L **
21464615-G-T 19302729-G-T **
15497967-A-T 13386087-A-T **
15218668-G-A 13106754-G-A **
5605828-C-A 5737787-C-A **
14297244-T-G 12176538-T-G **
23723627-T-A 21561741-T-A **
14021203-C-A 11900497-C-A **
16029577-C-A 13917697-C-A **
22537247-C-A 20375361-C-A **
21306458-C-A 19144572-C-A **
13217997-C-A 11062321-C-A **
15061723-C-A 12949815-C-A **
4201705-C-A 4333664-C-A **
4900281-C-A 5032240-C-A **
10851840-T-G **
10781205-A-C **
14567704-GGTGT-G 12455904-GGTGT-G 8×GT**
3535943-T-G 3667902-T-G **
16651972-C-A 14540092-C-A **
25512856-T-A 23366709-T-A P1_gr1 **
10684273-C-G **
10888332-C-A **
25512863-G-C 23366716-G-C P1_gr1 **
3501179-C-A 3633138-C-A **
10781211-T-G **
8020548-G-A 8152507-G-A **
5289650-C-A 5421609-C-A **
22803994-A-T 20642108-A-T 10×T**
28473870-C-A 26327723-C-A **
28492382-C-A 26346235-C-A **
28509672-C-A 26363525-C-A **
28693797-C-A 26547650-C-A **
28773092-T-C 26626945-T-C **
28802834-G-T 26656687-G-T **
28804004-G-T 26657857-G-T **
28804020-A-T 26657873-A-T **
6773525-TTC-T 6905484-TTC-T ****
56847206-A-G **
27792003-T-G 25645856-T-G P1_Y2 **
22422928-C-G 20261042-C-G DYZ19 **
7867879-GGAAAGAAA-G 7999838-GGAAAGAAA-G 16×GAAA**
56855437-C-A **
20637629-AGTGTGT-A 18475743-AGTGTGT-A P4_Prx 16×GT**
56861102-A-G **
58971404-T-G 56825257-T-G **
22507834-C-A 20345948-C-A DYZ19 **
16364109-TATAC-T 14252229-TATAC-T **
56870050-T-A **
28099260-T-G 25953113-T-G P1_Y2 **
27759124-A-C 25612977-A-C P1_Y2 **
2688622-AT-A 2820581-AT-A 29×T**
25174442-C-A 23028295-C-A g1 **
10671488-A-ACCACTCCAAT **
10031176-G-A 10193567-G-A **
15495185-C-A 13383305-C-A **
24071612-T-G 21925465-T-G P3_b1 **
11001841-A-T **
11001830-C-G **
15122331-C-A 13010418-C-A **
28803983-G-T 26657836-G-T **
24389997-C-A 22243850-C-A **
25512870-G-C 23366723-G-C P1_gr1 **
27497100-C-A 25350953-C-A P1_Y2 **
25512883-T-A 23366736-T-A P1_gr1 **
26956774-T-A 24810627-T-A P1_r3 **
26956782-C-A 24810635-C-A P1_r3 **
26956792-G-T 24810645-G-T P1_r3 **
26956800-T-A 24810653-T-A P1_r3 **
26956819-T-A 24810672-T-A P1_r3 **
26956826-T-A 24810679-T-A P1_r3 **
26956828-T-A 24810681-T-A P1_r3 **
27497048-T-C 25350901-T-C P1_Y2 **
27497075-T-A 25350928-T-A P1_Y2 **
14021326-C-A 11900620-C-A **
10902413-G-T **
5777533-G-T 5909492-G-T **
3365280-A-G 3497239-A-G **
4188702-G-T 4320661-G-T **
4168110-T-G 4300069-T-G **
4139012-A-T 4270971-A-T **
4138427-T-G 4270386-T-G **
4064141-A-G 4196100-A-G FT80418 **
3893057-C-A 4025016-C-A **
3825476-A-T 3957435-A-T **
3549117-A-G 3681076-A-G **
3394178-G-T 3526137-G-T **
3352017-G-T 3483976-G-T **
4258482-C-A 4390441-C-A **
3178757-C-A 3310716-C-A **
3150695-G-T 3282654-G-T **
3026848-G-T 3158807-G-T **
2999748-G-T 3131707-G-T **
22623470-G-T 20461584-G-T **
15798093-C-A 13686213-C-A **
22660421-C-T 20498535-C-T **
16437490-C-A 14325610-C-A **
10859574-CCATAGCACTG-C **
4244533-C-A 4376492-C-A **
21206940-A-G 19045054-A-G **
10961447-A-T **
4753093-G-T 4885052-G-T **
5266981-T-A 5398940-T-A **
5236316-C-A 5368275-C-A **
5231842-A-G 5363801-A-G **
5226869-G-T 5358828-G-T **
5214265-C-CTTTA 5346224-C-CTTTA 5×TTTA**
5015516-G-T 5147475-G-T **
4990751-C-A 5122710-C-A **
4891879-G-T 5023838-G-T **
4871910-G-T 5003869-G-T **
4733194-G-T 4865153-G-T **
4381193-C-A 4513152-C-A **
4705510-G-T 4837469-G-T **
22545961-A-G 20384075-A-G **
4563403-G-T 4695362-G-T **
4554519-T-G 4686478-T-G **
4554484-CAAAT-C 4686443-CAAAT-C **
4539491-G-T 4671450-G-T **
4461287-G-T 4593246-G-T **
4433897-A-T 4565856-A-T **
4428325-G-T 4560284-G-T **
11016254-C-A **
7374874-T-G 7506833-T-G **
22765575-C-A 20603689-C-A **
10837384-C-A **
10964768-A-T **
9361055-CAA-C 9523446-CAA-C **
7098841-C-A 7230800-C-A **
56848254-C-A **
3603367-C-A 3735326-C-A **
3535940-C-G 3667899-C-G **
11009187-G-T **
10683414-C-A **
18758903-T-TTCTTTC 16647023-T-TTCTTTC 5×TCTTTC**
19358152-G-A 17246272-G-A **
10907749-G-A **
18035971-C-A 15924091-C-A **
10684265-A-C **
10684238-C-A **
10684229-CACTCT-C **
17697046-C-A 15585166-C-A **
23425545-C-A 21263659-C-A **
15450009-C-A 13338129-C-A **
15202497-C-A 13090583-C-A **
28816100-G-A 26669953-G-A **
10802420-C-A **
19129580-C-A 17017700-C-A **
23339244-C-A 21177358-C-A **
9735812-G-T 9898203-G-T IR3_Prx **
22968053-C-A 20806167-C-A Y130674 **
16045515-C-A 13933635-C-A **
16424190-C-A 14312310-C-A **
21912160-C-A 19750274-C-A **
22901970-A-T 20740084-A-T **
19112348-C-A 17000468-C-A **
22914485-T-G 20752599-T-G **
14069092-C-A 11948386-C-A **
11025351-G-A **
22973085-T-A 20811199-T-A **
23211000-C-A 21049114-C-A **
5358930-C-A 5490889-C-A **
10781268-C-G **
10781266-T-C **
10781206-C-T **
16016319-C-A 13904439-C-A **
3535948-A-G 3667907-A-G **
10999652-C-T **
16580-AG-A **
21139488-C-A 18977602-C-A **
56830379-A-ACTTCG ***
56838535-C-T ***
22489790-T-G 20327904-T-G DYZ19 ***
21954471-G-T 19792585-G-T ***
23272218-CT-C 21110332-CT-C ***
24099587-GTT-G 21953440-GTT-G P3_b1 22×T***
19477724-C-A 17365844-C-A ***
19960086-G-A 17848206-G-A P5_Prx ***
24961083-C-T 22814936-C-T g1 ***
22489832-T-G 20327946-T-G DYZ19 ***
22456439-T-A 20294553-T-A DYZ19 ***
22441929-G-C 20280043-G-C DYZ19 ***
22435816-G-C 20273930-G-C DYZ19 ***
22368024-G-A 20206138-G-A DYZ19 ***
22360436-G-C 20198550-G-C DYZ19 ***
22360384-T-C 20198498-T-C DYZ19 ***
22357794-G-T 20195908-G-T DYZ19 ***
22357792-C-A 20195906-C-A DYZ19 ***
22357790-T-G 20195904-T-G DYZ19 ***
22285907-G-A 20124021-G-A DYZ19 ***
20025104-A-C 17913224-A-C P5_Prx ***
13812111-T-A 11691405-T-A ***
25106329-T-C 22960182-T-C g1 ***
13812078-G-C 11691372-G-C ***
13812067-G-T 11691361-G-T ***
13812037-CAAATG-C 11691331-CAAATG-C ***
13448519-C-A 11292843-C-A ******
9989842-G-A 10152233-G-A ***
9361053-AACAAAC-A 9523444-AACAAAC-A ***
13463456-G-T 11307780-G-T ***
22247766-G-A 20085880-G-A DYZ19 ***
13826509-T-G 11705803-T-G ***
22226234-G-T 20064348-G-T DYZ19 ***
25209129-G-A 23062982-G-A P2_r1 ***
24673159-ACG-A 22527012-ACG-A P3_b2 ***
22450507-T-G 20288621-T-G DYZ19 ***
25040510-T-C 22894363-T-C g1 ***
25206423-T-C 23060276-T-C g1 ***
19251399-G-T 17139519-G-T ***
2901631-AT-A 3033590-AT-A ***
19131840-CAGATTTAA-C 17019960-CAGATTTAA-C ***
17859377-G-T 15747497-G-T ***
17375588-C-A 15263708-C-A ***
16631768-AAATT-A 14519888-AAATT-A 4×AATT***
15584914-G-A 13473034-G-A ***
14657615-G-T 12545680-G-T ***
13472107-C-A 11316431-C-A ***
10989180-TC-T,TG ***
10893887-A-T FT91979 ***
10664798-T-C,G ***
8138286-C-A 8270245-C-A ***
24960872-ATGTG-A 22814725-ATGTG-A g1 15×TG***
4582211-TTTCCC-T 4714170-TTTCCC-T ***
10672546-A-C ***
28784638-T-A 26638491-T-A ***
8913186-C-A 9045145-C-A ***
16668012-C-A 14556132-C-A ***
18706859-CAAA-C 16594979-CAAA-C 11×A***
13484922-A-G 11329246-A-G ***
22814882-T-C 20652996-T-C ***
10884647-C-A ***
28805788-G-A 26659641-G-A ***
13855619-G-T 11734913-G-T ***
10672550-A-T ***
7156888-C-A 7288847-C-A ***
15489491-C-A 13377611-C-A ***
16679099-ATT-A,AT 14567219-ATT-A,AT 25×T***
11676669-A-T ***
16576-T-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 4066691059113276528167730602
Kit: 406669955846577802197678356
Used in age calculations1059113277802197730602
Counts of SNPs2525
Variant counts last updated 2019-12-12 02:43:10.



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