Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > BY3548 > Z43/S366 > Z144 > BY28794 > PF6582

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
469791
BigY2
469791
22310258-T-G 20148372-T-G DYZ19 ***A*
25984254-G-T 23838107-G-T P1_Y1 ***A*
24332665-G-A 22186518-G-A P3_t1 ***A*
26014048-A-T 23867901-A-T P1_Y1 ***A*
22234499-C-A 20072613-C-A DYZ19 ***A*
20704704-A-G 18542818-A-G P4_Prx ***A*
20618058-C-T 18456172-C-T P4_Prx ***A*
19812581-G-A 17700701-G-A P5_Prx ***A*
25990576-C-G 23844429-C-G BY226540 P1_Y1 ***+
17366498-C-T 15254618-C-T Y98941 YY++
16680652-T-A 14568772-T-A CTS6117 YY+**
24007854-T-G 21861707-T-G BY149268 Y++
22476922-G-A 20315036-G-A DYZ19 ++
22508655-A-T 20346769-A-T BY225495 DYZ19 +
21711356-ATCTTT-A 19549470-ATCTTT-A ++
21065905-G-A 18904019-G-A FT77094 YY+**
19321022-C-T 17209142-C-T Y104402 YY++
18794684-A-G 16682804-A-G Y102701 YY++
18779712-T-C 16667832-T-C Y102664 YY++
17970318-T-C 15858438-T-C Y100817 YY++
17912300-A-T 15800420-A-T Y100626 YY++
21359999-T-C 19198113-T-C Y106231 YY++
15724718-G-A 13612838-G-A Y94579 YY++
14940159-C-T 12828233-C-T Y92585 YY++
9992854-G-A 10155245-G-A BY82607 Y++
9932452-T-A 10094843-T-A BY82038 Y**+
14980742-G-A 12868818-G-A Y92690 YY++
6657710-G-A 6789669-G-A Y82258 YY++
8046702-T-C 8178661-T-C Y85700 YY++
9927762-A-G 10090153-A-G Y89558 Y**+
9118280-C-T 9280671-C-T Y88631 Y++
8349117-G-A 8481076-G-A Y86561 YY++
22304066-G-C 20142180-G-C DYZ19 ****
22230375-A-T 20068489-A-T DYZ19 ****
15932279-G-T 13820399-G-T **
15748125-G-T 13636245-G-T **
15776275-C-A 13664395-C-A **
16000087-G-T 13888207-G-T **
15936694-G-A 13824814-G-A **
15556039-C-A 13444159-C-A **
16001325-G-T 13889445-G-T **
14431540-T-G 12310813-T-G **
14693412-C-A 12581478-C-A **
15671112-A-T 13559232-A-T **
15296824-G-T 13184923-G-T **
15533781-C-A 13421901-C-A **
15482760-C-A 13370880-C-A **
15474937-C-A 13363057-C-A **
15239060-G-A 13127146-G-A **
15156130-C-A 13044217-C-A **
15049968-T-G 12938059-T-G **
14635747-G-C 12523816-G-C **
14470631-AAAGAAG-A 12349900-AAAGAAG-A **
14470639-AAAAAGAAAAAG-A 12349908-AAAAAGAAAAAG-A **
14571190-G-T 12459390-G-T **
14832109-T-C 12720176-T-C **
15047831-C-A 12935922-C-A **
14635739-T-A 12523808-T-A **
22313495-G-T 20151609-G-T DYZ19 **
16045760-A-C 13933880-A-C **
17188412-C-A 15076532-C-A **
18007487-T-A 15895607-T-A P7_Gap **
17969127-C-A 15857247-C-A **
17870819-G-A 15758939-G-A **
17707376-CAAAAAAA-C 15595496-CAAAAAAA-C 23×A**
17644424-C-T 15532544-C-T Y99792 **
17505531-T-G 15393651-T-G **
17491962-C-A 15380082-C-A **
17347469-C-A 15235589-C-A **
17333967-T-G 15222087-T-G **
17333368-C-A 15221488-C-A **
17211255-G-T 15099375-G-T **
17125171-C-A 15013291-C-A **
16084102-G-T 13972222-G-T **
17122274-T-G 15010394-T-G **
14389247-C-A 12268543-C-A **
17093820-C-A 14981940-C-A **
17092566-T-A 14980686-T-A **
17038494-T-G 14926614-T-G **
17038483-T-A 14926603-T-A **
17038467-C-A 14926587-C-A **
16881466-C-A 14769586-C-A **
16826495-C-A 14714615-C-A **
16648373-T-C 14536493-T-C FT72284 **
16462387-C-A 14350507-C-A **
16284242-C-A 14172362-C-A **
14395143-C-A 12274439-C-A **
11662608-C-A **
14385454-C-A 12264750-C-A **
11011310-G-C **
13526382-C-A 11370706-C-A **
13488978-A-G 11333302-A-G **
13468193-T-G 11312517-T-G **
13433273-C-A 11277597-C-A **
13410823-T-A 11255147-T-A **
13259084-C-A 11103408-C-A **
13226465-C-A 11070789-C-A **
13223614-G-T 11067938-G-T **
13209467-T-G 11053791-T-G **
11014054-C-A **
11011280-A-C **
13709528-T-A 11553852-T-A **
11006442-T-C **
11001629-C-A **
11000473-C-T **
10997870-A-T **
10997864-C-A **
10994431-C-A **
10994308-C-A **
10992577-T-A **
10992247-A-C **
10992234-T-A **
10992226-TGTTTC-T **
13588267-C-A 11432591-C-A **
13710328-G-T 11554652-G-T **
14383883-G-T 12263179-G-T **
13927470-C-A 11806764-C-A **
14318312-C-A 12197606-C-A **
14310370-GA-G 12189664-GA-G **
14264381-C-A 12143675-C-A **
14196349-A-T 12075643-A-T **
14181144-T-C 12060438-T-C Y90538 **
14124052-C-A 12003346-C-A **
14014739-GA-G 11894033-GA-G **
13944704-C-A 11823998-C-A **
13939632-C-A 11818926-C-A **
13932554-T-C 11811848-T-C **
13899509-C-A 11778803-C-A **
13710351-T-A 11554675-T-A **
13893564-A-T 11772858-A-T **
13798762-G-T 11678056-G-T **
11674388-G-T **
18079505-G-T 15967625-G-T **
11658660-A-G **
11647744-C-A **
11647227-A-C **
13718527-A-T 11562851-A-T **
13710381-G-T 11554705-G-T **
13710372-G-C 11554696-G-C **
13710363-T-G 11554687-T-G **
18036473-T-G 15924593-T-G **
19377142-G-A 17265262-G-A **
18079574-G-T 15967694-G-T **
22989099-G-T 20827213-G-T **
26169710-G-T 24023563-G-T P1_Y1 **
26169702-A-T 24023555-A-T P1_Y1 **
26124458-ACGAAAGAAAAG-A 23978311-ACGAAAGAAAAG-A P1_Y1 **
26094829-C-A 23948682-C-A P1_Y1 **
25970738-CT-C 23824591-CT-C P1_Y1 **
25250595-GACCT-G 23104448-GACCT-G P2_r1 **
24220993-C-A 22074846-C-A P3_b1 **
23570212-A-T 21408326-A-T **
23343591-T-A 21181705-T-A **
23184941-C-A 21023055-C-A **
22950270-C-A 20788384-C-A **
26169731-A-T 24023584-A-T P1_Y1 **
22886303-G-T 20724417-G-T **
22886025-G-T 20724139-G-T **
22741514-C-A 20579628-C-A **
22660968-A-T 20499082-A-T **
22599108-A-C 20437222-A-C **
22487806-G-T 20325920-G-T DYZ19 **
22313508-G-C 20151622-G-C DYZ19 **
22313489-C-A 20151603-C-A DYZ19 **
22313485-C-A 20151599-C-A DYZ19 **
22313476-G-T 20151590-G-T DYZ19 **
22313461-C-A 20151575-C-A DYZ19 **
26169727-A-T 24023580-A-T P1_Y1 **
26358724-C-A 24212577-C-A P1_Y1 **
22164398-A-T 20002512-A-T **
28658551-C-T 26512404-C-T **
56847530-G-T **
56841752-G-T **
56839077-G-T **
56823199-C-A **
56756857-T-A **
28809349-T-G 26663202-T-G **
28797845-A-T 26651698-A-T **
28715970-C-A 26569823-C-A **
28712036-A-C 26565889-A-C **
28699788-A-G 26553641-A-G **
28640986-T-G 26494839-T-G **
26358776-T-G 24212629-T-G P1_Y1 **
28635132-C-A 26488985-C-A **
28611626-C-A 26465479-C-A **
28598553-T-A 26452406-T-A **
28542375-C-A 26396228-C-A **
28532652-C-A 26386505-C-A **
28521642-C-A 26375495-C-A **
28485968-T-G 26339821-T-G **
28462350-T-C 26316203-T-C **
27202939-T-A 25056792-T-A P1_g3 **
27202925-G-T 25056778-G-T P1_g3 **
27202914-T-A 25056767-T-A P1_g3 **
22215250-G-A 20053364-G-A **
22152925-A-C 19991039-A-C **
18150590-C-A 16038710-C-A **
19183914-C-A 17072034-C-A **
19885093-C-A 17773213-C-A P5_Prx **
19885091-C-A 17773211-C-A P5_Prx **
19827915-A-T 17716035-A-T P5_Prx **
19535671-T-A 17423791-T-A **
19429756-CT-C 17317876-CT-C **
19416797-A-G 17304917-A-G **
19411934-G-GAAAT 17300054-G-GAAAT **
10982485-C-A **
19248875-G-T 17136995-G-T **
19209711-T-G 17097831-T-G **
19129164-C-A 17017284-C-A **
20473557-A-T 18311671-A-T P5_Dst **
18956258-A-C 16844378-A-C **
18906272-T-A 16794392-T-A **
18730908-G-T 16619028-G-T **
18730871-T-A 16618991-T-A **
18625265-G-T 16513385-G-T **
18611600-T-A 16499720-T-A **
18566013-C-A 16454133-C-A **
18390190-G-A 16278310-G-A P6_Gap **
18371835-T-A 16259955-T-A P6_Prx **
18371820-G-T 16259940-G-T P6_Prx **
18185387-T-A 16073507-T-A **
20360959-T-TG 18199073-T-TG P5_Dst **
20473574-A-T 18311688-A-T P5_Dst **
22125626-C-A 19963740-C-A Y108456 **
21203897-T-C 19042011-T-C **
22103572-T-A 19941686-T-A **
22085889-T-A 19924003-T-A **
22011279-C-T 19849393-C-T **
21984312-C-A 19822426-C-A **
21888744-C-A 19726858-C-A **
21796500-T-A 19634614-T-A **
21771617-C-A 19609731-C-A **
21673085-C-A 19511199-C-A **
21671598-G-C 19509712-G-C **
21665694-C-A 19503808-C-A **
21203892-C-T 19042006-C-T **
20478249-T-TTG 18316363-T-TTG P5_Dst **
21203887-A-G 19042001-A-G **
21203866-T-G 19041980-T-G **
21203857-C-G 19041971-C-G **
21201108-C-A 19039222-C-A **
21116965-C-A 18955079-C-A **
20989265-A-C 18827379-A-C P4_Dst **
20989247-G-T 18827361-G-T P4_Dst **
20989240-A-T 18827354-A-T P4_Dst **
20815844-C-A 18653958-C-A P4_Gap **
20651578-C-T 18489692-C-T P4_Prx **
20651537-A-ATGTC 18489651-A-ATGTC P4_Prx **
10990065-C-A **
10964302-C-A **
10976676-C-A **
4957856-G-T 5089815-G-T **
5562960-C-A 5694919-C-A **
5519963-C-A 5651922-C-A **
5459202-G-C 5591161-G-C **
5449380-C-A 5581339-C-A **
5411974-G-A 5543933-G-A **
5219516-G-A 5351475-G-A **
5112969-G-T 5244928-G-T **
4985172-G-T 5117131-G-T **
4957903-G-T 5089862-G-T **
4875385-G-T 5007344-G-T **
5828983-ACAC-A 5960942-ACAC-A **
4875346-G-T 5007305-G-T **
4842918-A-T 4974877-A-T **
4634144-G-A 4766103-G-A **
4557292-T-A 4689251-T-A **
4236074-C-A 4368033-C-A **
4093930-T-G 4225889-T-G **
4026272-G-T 4158231-G-T **
3650657-G-T 3782616-G-T **
3535901-T-C 3667860-T-C **
5688330-A-AT 5820289-A-AT **
5874232-T-G 6006191-T-G **
3436424-A-G 3568383-A-G **
6948240-C-A 7080199-C-A **
7721249-A-T 7853208-A-T **
7626216-T-A 7758175-T-A **
7467904-T-C 7599863-T-C IR1_L **
7338219-G-A 7470178-G-A **
7309588-T-G 7441547-T-G **
7225478-C-A 7357437-C-A **
7209982-A-T 7341941-A-T **
7175997-C-A 7307956-C-A **
7100739-C-A 7232698-C-A **
6822050-A-G 6954009-A-G **
5904294-G-T 6036253-G-T **
6807198-A-C 6939157-A-C **
6798911-C-A 6930870-C-A **
6776497-CAAAAAAA-C 6908456-CAAAAAAA-C 28×A**
6697180-T-C 6829139-T-C **
6490794-C-A 6622753-C-A **
6440068-G-T 6572027-G-T **
6012842-T-G 6144801-T-G **
5983807-A-C 6115766-A-C **
5976915-C-A 6108874-C-A **
3516175-G-T 3648134-G-T **
3436386-T-A 3568345-T-A **
7990414-C-A 8122373-C-A **
6106086-T-A 6238045-T-A **
10926694-A-T **
19563390-C-A 17451510-C-A **
15288662-C-A 13176761-C-A **
17546112-C-A 15434232-C-A **
21267831-C-A 19105945-C-A FT25209 **
17211466-C-A 15099586-C-A **
13466144-C-A 11310468-C-A **
10972271-T-G **
10869730-C-A **
18546897-C-A 16435017-C-A **
4862827-A-C 4994786-A-C **
56837375-C-A **
15939192-C-A 13827312-C-A **
10955270-C-T **
22468440-C-T 20306554-C-T DYZ19 ****
22287788-TC-T 20125902-TC-T DYZ19 *****
17466766-C-A 15354886-C-A **
17466768-G-T 15354888-G-T 18×A**
23552740-A-C 21390854-A-C BY164644Z12208 F13771 **
3436432-G-A 3568391-G-A L451 ****
4213169-C-A 4345128-C-A **
6490775-T-A 6622734-T-A **
3436376-A-C 3568335-A-C **
2884912-A-T 3016871-A-T **
3436369-A-G 3568328-A-G **
3436355-G-A 3568314-G-A **
3436324-G-A 3568283-G-A **
3341373-G-T 3473332-G-T **
3294194-G-T 3426153-G-T **
3209352-G-T 3341311-G-T **
3104416-A-T 3236375-A-T **
3103652-C-A 3235611-C-A **
2895088-C-A 3027047-C-A **
14831868-C-A 12719935-C-A **
10801109-C-A **
21754428-G-T **
17211050-C-A 15099170-C-A **
7320462-C-A 7452421-C-A **
10868828-C-A **
10868827-C-T **
10868785-T-G **
10868784-A-C **
10763135-C-T **
22297897-T-A 20136011-T-A DYZ19 **
7922234-C-A 8054193-C-A **
6132080-C-A 6264039-C-A **
8077409-G-T 8209368-G-T FT123833 **
10800598-T-A **
10866157-C-A **
10863667-A-C **
10862916-C-A **
10856504-C-A **
10852626-T-G **
10830787-C-A **
8078764-C-A 8210723-C-A **
10829157-C-A **
10825312-T-G **
10800622-C-T **
10788084-T-G **
10888169-T-G **
10776001-A-T **
10775188-C-A **
10763128-T-G **
10754874-C-A **
10748743-G-T **
10748739-C-A **
10748738-A-T **
10694168-T-C **
10692104-C-A **
10690063-G-T **
10887526-A-T **
10890325-C-G **
10671354-C-A **
10934500-C-A **
10968651-G-T **
10968541-T-G **
10967370-A-C **
10955280-C-G **
10955276-C-T **
10955261-A-G **
10947403-C-A **
10947202-C-A **
10941826-C-A **
10939924-C-G **
10927826-T-C **
10899221-C-T **
10927811-TTCCTC-T **
10927799-C-A **
10927225-T-A **
10926713-C-CAAACA **
10926707-C-CCATCG **
10926704-A-T **
10926689-A-AGGTGG **
10925629-C-CGTTCG **
10918072-G-T **
10918023-T-A **
10899600-A-C **
10678249-G-T **
10829184-A-G **
56854932-G-T **
9941576-A-G 10103967-A-G **
9229926-A-T 9392317-A-T **
9414713-C-A 9577104-C-A **
9421140-T-G 9583531-T-G **
9229910-C-A 9392301-C-A **
9034612-A-G 9197003-A-G **
8671870-A-C 8803829-A-C **
9442199-C-A 9604590-C-A **
9508486-T-A 9670877-T-A **
9034604-G-A 9196995-G-A **
8855303-C-A 8987262-C-A Y88200 **
9855933-C-A 10018324-C-A **
9537656-A-T 9700047-A-T IR3_Prx **
9229902-A-T 9392293-A-T **
10653678-C-A **
8267224-C-A 8399183-C-A **
8273968-A-G 8405927-A-G **
9229891-A-T 9392282-A-T **
9034616-T-A 9197007-T-A **
10660350-A-G **
9229881-A-T 9392272-A-T **
9973531-C-A 10135922-C-A **
9229876-G-T 9392267-G-T **
9034611-C-T 9197002-C-T **
10059327-A-C 10221718-A-C **
24229249-T-C 22083102-T-C P3_b1 ***
26183082-T-C 24036935-T-C P1_Y1 ***
24971564-A-G 22825417-A-G g1 ***
25133172-G-A 22987025-G-A g1 ***
27011334-G-A 24865187-G-A P1_r4 ***
7464181-CA-C,CAA 7596140-CA-C,CAA IR1_L 15×A***
17315581-C-A 15203701-C-A ***
24147622-A-G 22001475-A-G P3_b1 ***
22365605-T-C 20203719-T-C DYZ19 ***
22468496-G-C 20306610-G-C DYZ19 ***
10028799-G-A 10191190-G-A ***
7761047-GA-G 7893006-GA-G 9×A***
24423236-GAT-G 22277089-GAT-G ***
10031859-G-A 10194250-G-A ***
23679316-TATA-T 21517430-TATA-T ***
13143380-G-A 10632866-G-A ***
10012458-G-A 10174849-G-A ***
22241374-C-A 20079488-C-A BY46594 DYZ19 ******
22449670-C-T 20287784-C-T DYZ19 ******
22254503-C-A 20092617-C-A DYZ19 ***
22261995-T-A 20100109-T-A DYZ19 ***
22303917-C-A 20142031-C-A DYZ19 ***
22328603-G-C 20166717-G-C DYZ19 ***
22368066-C-A 20206180-C-A DYZ19 ***
22368730-T-C 20206844-T-C DYZ19 ***
22448809-G-A 20286923-G-A DYZ19 ***
10940255-C-A ***
10663618-T-A ***
10940074-C-A ***
18986078-C-A 16874198-C-A FGC47550 ***
18390034-T-G 16278154-T-G P6_Gap ***
5968144-C-A 6100103-C-A ***
13799444-C-A 11678738-C-A ***
21519085-GA-G 19357199-GA-G 9×A***
15268783-C-A 13156872-C-A ***
9583317-C-A 9745708-C-A IR3_Prx ***
19125694-CAAAAAA-C 17013814-CAAAAAA-C 24×A***
18390016-A-G 16278136-A-G P6_Gap ***
14025855-A-C 11905149-A-C ***
5454929-T-C 5586888-T-C ***
19161211-A-G 17049331-A-G ***
14701516-C-A 12589582-C-A ***
4958210-G-T 5090169-G-T ***
10663596-G-A ***
18390022-G-A 16278142-G-A P6_Gap ***
18390010-G-C 16278130-G-C P6_Gap ***
23414226-C-A 21252340-C-A ***
15740554-C-A 13628674-C-A ***
15770570-G-T 13658690-G-T ***
22768348-TAAA-T,TAAAA 20606462-TAAA-T,TAAAA 17×A***
10663609-T-C ***
15677933-CAAAAA-C,CAAA 13566053-CAAAAA-C,CAAA 21×A***
4769364-C-A 4901323-C-A ***
22579984-C-A 20418098-C-A ***
15580103-C-G 13468223-C-G ***
22011638-C-A 19849752-C-A ***
10925201-C-A ***
18616784-G-GTT 16504904-G-GTT 15×T***
15580100-C-T 13468220-C-T ZS6722 ***
10970754-T-C ***
18154391-C-A 16042511-C-A ***
16427506-C-A 14315626-C-A ***
15717236-C-A 13605356-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 4697911038058075702897658121
Kit: 469791941515876866707588611
Used in age calculations1038058076866707658121
Counts of SNPs1916
Variant counts last updated 2019-11-11 02:43:31.



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