Boyd

FTDNA: 712874, BigY2: 712874

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > BY11744 > FGC32556 > 15485237-A-G

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
712874		BigY2
712874
22319713-G-A 20157827-G-A DYZ19 ***A*
24294681-T-C 22148534-T-C P3_t1 ***A*
22257047-G-A 20095161-G-A DYZ19 ***A*
26124278-T-G 23978131-T-G P1_Y1 ***A*
15009784-A-G 12897869-A-G BY45091 YY++
22463838-G-C 20301952-G-C BY45093 DYZ19 ***+
22470143-G-A 20308257-G-A Z15875 DYZ19 ++
15234141-T-C 13122227-T-C BY45092 Y++
18941412-T-C 16829532-T-C BY124954 YY++
2887815-C-T 3019774-C-T FT178640 YY++
3436268-T-C 3568227-T-C Y5969 **+
17055024-C-T 14943144-C-T BY112066 YY++
6930990-C-T 7062949-C-T BY155891 YY++
14042489-G-C 11921783-G-C BY45089 YY++
14818709-A-G 12706780-A-G BY45090 YY++
13650606-GTGGAA-G 11494930-GTGGAA-G 6×TGGAA****
6918869-T-TAC 7050828-T-TAC 18×AC*
13451005-T-A 11295329-T-A *
14273572-A-C 12152866-A-C FT21210 **
56851723-C-A **
14385443-G-C 12264739-G-C **
14451346-G-T 12330619-G-T **
14555004-T-A 12443205-T-A **
14564139-C-A 12452339-C-A **
14585572-T-A 12473772-T-A **
14609799-C-CAA 12498001-C-CAA 23×A**
14623565-A-G 12511763-A-G **
14660558-G-C 12548623-G-C **
14712154-T-A 12600221-T-A **
14715818-C-A 12603885-C-A **
14431335-C-A 12310608-C-A **
14196235-C-A 12075529-C-A **
14832029-A-C 12720096-A-C **
13927449-G-A 11806743-G-A **
11646347-G-A **
11647960-G-T **
11647975-G-T **
11662341-G-T **
11667883-C-A **
13798605-A-T 11677899-A-T **
13809707-T-G 11689001-T-G **
13929160-T-G 11808454-T-G **
14181034-C-A 12060328-C-A **
13929173-A-C 11808467-A-C **
13940574-C-A 11819868-C-A **
13947028-C-A 11826322-C-A **
13952680-C-A 11831974-C-A **
13961566-T-G 11840860-T-G **
13962448-A-C 11841742-A-C **
14074029-G-T 11953323-G-T **
14076840-C-A 11956134-C-A **
14724630-C-A 12612698-C-A **
15396921-G-C 13285041-G-C **
14988847-G-A 12876913-G-A FGC35201 **
16405369-C-A 14293489-C-A **
16114665-TTATA-T 14002785-TTATA-T P8_Prx 9×TA**
16171980-C-A 14060100-C-A **
16220842-A-T 14108962-A-T **
16241390-C-A 14129510-C-A **
16266100-G-T 14154220-G-T **
16379491-T-A 14267611-T-A **
16493178-G-T 14381298-G-T **
16035544-A-C 13923664-A-C **
16506766-CAAA-C 14394886-CAAA-C 19×A**
16662687-C-A 14550807-C-A **
16739357-C-A 14627477-C-A **
16786166-T-A 14674286-T-A **
16842824-T-A 14730944-T-A **
16971356-T-A 14859476-T-A **
16044423-C-G 13932543-C-G **
15987699-C-A 13875819-C-A **
15044495-C-G 12932585-C-G **
15370323-G-T 13258443-G-T **
15106819-C-A 12994906-C-A **
15109810-G-T 12997897-G-T **
15143342-T-A 13031429-T-A **
15212632-G-A 13100718-G-A **
15221884-A-T 13109970-A-T **
15288068-C-A 13176167-C-A **
13710861-G-A 11555185-G-A **
15987680-A-T 13875800-A-T **
15595342-C-A 13483462-C-A **
15619343-A-C 13507463-A-C **
15647762-G-T 13535882-G-T **
15732268-C-A 13620388-C-A **
15798117-A-T 13686237-A-T **
15943095-C-A 13831215-C-A **
13721294-A-T 11565618-A-T **
13571028-G-T 11415352-G-T **
13710790-A-T 11555114-A-T **
10934755-A-T **
10986566-C-A **
10977830-C-A **
10973969-C-G **
10971756-C-A **
10964775-T-G **
10964155-T-C **
10961389-T-TCAATG **
10961291-C-A **
10959349-T-C **
10959338-C-T **
10947507-C-A **
10940880-G-A **
10934817-T-G **
10934781-C-G **
10934751-C-CA **
10990482-G-A **
10910517-G-T **
10896341-T-C **
10896387-G-T **
10899070-C-G **
10902822-C-A **
10902849-T-G **
10909674-T-G **
10913312-A-T **
10934731-T-G **
10913318-T-A **
10913320-C-A **
10913322-A-C **
10913349-A-T **
10913358-C-T **
10924300-T-C **
10988403-A-C **
10990495-G-C **
13710770-C-A 11555094-C-A **
17043044-C-A 14931164-C-A **
13349449-C-A 11193773-C-A **
13434017-C-A 11278341-C-A **
13504789-ATAAATAGAATACTGGTTACT-A 11349113-ATAAATAGAATACTGGTTACT-A **
13542213-C-A 11386537-C-A FT200081 **
13558291-G-C 11402615-G-C **
13559491-T-G 11403815-T-G **
13613601-C-A 11457925-C-A **
13315116-C-A 11159440-C-A **
13617802-G-T 11462126-G-T **
13624668-A-T 11468992-A-T **
13701789-G-T 11546113-G-T **
13701840-A-T 11546164-A-T **
13708069-A-G 11552393-A-G **
13708077-G-C 11552401-G-C **
13323291-C-A 11167615-C-A **
13307662-C-A 11151986-C-A **
10990506-A-C **
11006771-C-A **
10990512-T-C **
10990520-T-C **
10992160-G-T **
10998539-C-A **
10998911-C-A **
11002039-A-T **
11008953-C-A **
13255364-A-T 11099688-A-T **
11022410-C-T FT189925 **
11025918-C-A **
11025926-T-G **
13217171-C-A 11061495-C-A **
13226817-C-A 11071141-C-A **
13238153-C-A 11082477-C-A **
16971397-C-G 14859517-C-G **
17597724-A-C 15485844-A-C **
17215617-C-A 15103737-C-A **
24518259-C-A 22372112-C-A **
26159546-A-T 24013399-A-T P1_Y1 **
26025622-T-C 23879475-T-C BY180188 P1_Y1 **
26018902-C-A 23872755-C-A P1_Y1 **
26018880-A-T 23872733-A-T P1_Y1 **
26018879-A-T 23872732-A-T P1_Y1 **
26018875-G-T 23872728-G-T P1_Y1 **
26018856-G-T 23872709-G-T P1_Y1 **
26018841-C-A 23872694-C-A P1_Y1 **
25567456-A-C 23421309-A-C P1_gr1 **
25567399-C-T 23421252-C-T P1_gr1 **
25305270-C-A 23159123-C-A P2_r1 **
24924503-A-T 22778356-A-T g1 **
24878835-T-G 22732688-T-G g1 **
24518451-G-T 22372304-G-T **
24421910-G-T 22275763-G-T **
26282881-T-A 24136734-T-A P1_Y1 **
23825772-AAAT-A 21663886-AAAT-A **
22988966-T-A 20827080-T-A **
22994851-C-A 20832965-C-A **
23007189-T-C 20845303-T-C **
23101894-G-T 20940008-G-T **
23198312-C-A 21036426-C-A **
23372072-T-G 21210186-T-G **
23831338-G-A 21669452-G-A **
24343832-T-G 22197685-T-G P3_t1 **
21751608-C-A **
21766277-A-T **
24264720-G-T 22118573-G-T P3_b1 **
24264777-C-A 22118630-C-A P3_b1 **
24267368-A-C 22121221-A-C P3_b1 **
24302814-G-GAC 22156667-G-GAC P3_t1 **
26199645-G-A 24053498-G-A BY41124 P1_Y1 **
28078318-A-AC 25932171-A-AC P1_Y2 **
22874359-C-A 20712473-C-A **
28797806-T-A 26651659-T-A **
28724265-C-T 26578118-C-T **
28724279-C-T 26578132-C-T **
28724280-C-G 26578133-C-G **
28747836-C-A 26601689-C-A **
28791215-C-A 26645068-C-A **
28791251-A-T 26645104-A-T **
28818492-G-C 26672345-G-C **
28724256-A-C 26578109-A-C **
56822475-T-A **
56822504-A-T **
56830030-T-C **
56830200-C-A **
56847204-G-T **
56850650-G-T **
28724263-G-T 26578116-G-T **
28724246-G-A 26578099-G-A **
28468712-C-A 26322565-C-A **
28640296-C-A 26494149-C-A **
28471200-T-G 26325053-T-G **
28519948-A-T 26373801-A-T **
28545713-A-T 26399566-A-T **
28570500-C-A 26424353-C-A **
28618470-C-A 26472323-C-A **
28633174-G-T 26487027-G-T **
28645868-C-A 26499721-C-A **
28724239-G-C 26578092-G-C **
28658574-G-T 26512427-G-T **
28700858-C-A 26554711-C-A **
28706338-C-A 26560191-C-A **
28707545-C-A 26561398-C-A **
28720171-C-A 26574024-C-A **
28724238-G-A 26578091-G-A **
22988817-G-T 20826931-G-T **
22874343-T-A 20712457-T-A **
17231284-C-A 15119404-C-A FT282663 **
19121935-T-TA 17010055-T-TA **
20265276-T-A 18103390-T-A P5_Dst **
20050861-G-T 17938981-G-T P5_Prx **
20025430-CT-C 17913550-CT-C P5_Prx **
19983462-C-A 17871582-C-A P5_Prx **
19874766-T-A 17762886-T-A P5_Prx **
19839593-A-C 17727713-A-C P5_Prx **
19753166-T-G 17641286-T-G P5_Prx **
19745019-C-A 17633139-C-A P5_Prx **
19464587-T-G 17352707-T-G **
19464291-T-G 17352411-T-G **
19370230-C-A 17258350-C-A **
19354505-T-G 17242625-T-G **
19246013-C-A 17134133-C-A **
19155188-C-A 17043308-C-A **
19052157-G-A 16940277-G-A FT261712 **
20333176-CA-C 18171290-CA-C P5_Dst **
17505124-G-T 15393244-G-T **
17306433-G-T 15194553-G-T **
17374028-G-T 15262148-G-T **
17385440-C-A 15273560-C-A **
17433928-C-A 15322048-C-A **
17480239-C-A 15368359-C-A **
17500443-G-C 15388563-G-C **
10896148-C-G **
18930031-A-C 16818151-A-C **
17735439-A-C 15623559-A-C **
17859891-C-A 15748011-C-A **
17882848-T-A 15770968-T-A **
18359319-GTTTATTTATT-G 16247439-GTTTATTTATT-G P6_Prx 5×TTTA**
18652707-G-T 16540827-G-T **
18856196-ATG-A 16744316-ATG-A **
20292452-TG-T 18130566-TG-T P5_Dst **
20333186-TCTC-T 18171300-TCTC-T P5_Dst **
22874341-A-T 20712455-A-T **
22430121-T-C 20268235-T-C DYZ19 **
21635131-T-A 19473245-T-A **
21708486-A-G 19546600-A-G **
21912192-A-T 19750306-A-T **
22014721-A-T 19852835-A-T **
22193126-C-A 20031240-C-A **
22319289-AGTCC-A 20157403-AGTCC-A DYZ19 **
22591562-A-C 20429676-A-C **
21584399-A-T 19422513-A-T **
22591578-A-T 20429692-A-T **
22692175-C-A 20530289-C-A **
22775172-C-G 20613286-C-G **
22787022-C-A 20625136-C-A **
22874278-A-T 20712392-A-T **
22874323-T-A 20712437-T-A **
21584412-T-A 19422526-T-A **
21464400-C-A 19302514-C-A **
20333191-A-ACC 18171305-A-ACC P5_Dst **
20762426-C-A 18600540-C-A P4_Prx **
20433795-T-A 18271909-T-A P5_Dst **
20438757-A-C 18276871-A-C P5_Dst **
20533412-T-C 18371526-T-C P5_Dst **
20646662-A-T 18484776-A-T P4_Prx **
20653202-T-C 18491316-T-C P4_Prx **
20678499-C-G 18516613-C-G P4_Prx **
20762441-A-T 18600555-A-T P4_Prx **
21371189-A-G 19209303-A-G **
20776241-A-C 18614355-A-C P4_Prx **
20776279-T-A 18614393-T-A P4_Prx **
20815460-C-A 18653574-C-A P4_Gap **
21069964-T-A 18908078-T-A **
21087101-C-G 18925215-C-G **
21324326-A-T 19162440-A-T **
10896168-C-A **
10896138-T-C **
2919016-G-T 3050975-G-T **
10841017-C-A **
13207840-C-A 11052164-C-A **
11022430-A-T **
22427294-G-T 20265408-G-T DYZ19 **
10899044-C-T **
28661686-C-A 26515539-C-A **
3501114-C-A 3633073-C-A **
22427315-G-T 20265429-G-T DYZ19 **
28797850-A-T 26651703-A-T **
26199674-T-A 24053527-T-A P1_Y1 **
26199650-T-A 24053503-T-A P1_Y1 **
6654221-C-A 6786180-C-A **
5186903-C-A 5318862-C-A **
16618801-G-T 14506921-G-T **
19517775-C-A 17405895-C-A PR6488 ****
16336855-C-A 14224975-C-A **
15081381-C-A 12969471-C-A **
10814606-C-A **
10823502-C-T **
15169222-C-A 13057308-C-A **
10748031-CA-C **
10748027-A-AT **
15679923-G-T 13568043-G-T **
19983504-G-T 17871624-G-T P5_Prx **
19983451-G-T 17871571-G-T P5_Prx **
18959295-G-T 16847415-G-T **
10934748-T-G **
10979584-A-T **
10940222-C-A **
18630666-C-CTT 16518786-C-CTT 20×T**
21048291-C-A 18886405-C-A **
22224712-G-C 20062826-G-C DYZ19 **
3074929-T-G 3206888-T-G **
3605923-T-G 3737882-T-G **
10983929-C-T **
3603893-C-A 3735852-C-A **
3598745-T-G 3730704-T-G **
3550573-T-AA 3682532-T-AA **
3537908-C-A 3669867-C-A **
3466923-C-A 3598882-C-A **
3463887-C-A 3595846-C-A **
3436319-C-A 3568278-C-A **
3250708-T-G 3382667-T-G **
13434940-C-A 11279264-C-A **
3244444-G-T 3376403-G-T **
3148716-C-A 3280675-C-A **
3015544-G-T 3147503-G-T **
9890404-C-A 10052795-C-A **
13566948-C-CAT 11411272-C-CAT 12×AT**
2984876-C-A 3116835-C-A **
10894801-C-A **
2906993-C-T 3038952-C-T **
2881350-A-C 3013309-A-C **
2708536-G-C 2840495-G-C **
10913323-A-C FGC80846 **
4700354-C-A 4832313-C-A **
16931473-C-A 14819593-C-A **
18728718-C-A 16616838-C-A **
21754274-G-T **
28815213-T-A 26669066-T-A **
3640544-C-A 3772503-C-A **
10961397-A-C **
22224738-A-T 20062852-A-T DYZ19 **
10959341-T-C **
3620848-C-A 3752807-C-A **
10677548-A-C **
13234389-C-A 11078713-C-A **
10747976-C-A **
13394838-TC-T 11239162-TC-T **
10983095-C-A **
10756551-CTCCAT-C **
22427328-G-T 20265442-G-T DYZ19 **
27971770-G-A 25825623-G-A P1_Y2 **
11022037-AT-A **
10924324-T-C **
17859849-G-C 15747969-G-C **
22077169-C-A 19915283-C-A **
14575832-C-A 12464032-C-A **
10973451-C-T **
10801682-C-A **
18174762-C-A 16062882-C-A **
10801669-T-A **
10801656-C-G **
7154797-CAAAAA-C 7286756-CAAAAA-C 18×A**
8673169-C-A 8805128-C-A **
9231750-T-A 9394141-T-A **
22655110-C-A 20493224-C-A **
11026037-C-T **
11026036-T-A **
11026020-C-G **
11025954-ATTCCC-A **
20603885-G-A 18441999-G-A P5_Dst **
10844182-C-G **
10988665-C-T **
13280638-C-A 11124962-C-A **
10988655-C-A **
10979526-C-T **
10902808-C-A **
10940870-A-T **
28818920-G-T 26672773-G-T **
25966289-C-A 23820142-C-A P1_Y1 **
8073108-C-A 8205067-C-A **
22319287-CC-GA 20157401-CC-GA DYZ19 **
4213182-C-A 4345141-C-A **
10684214-C-T **
10764574-C-G **
26282891-G-T 24136744-G-T P1_Y1 **
10841026-C-T **
10896156-A-C **
10956615-A-T **
10956600-A-AATTCAATCGT **
10844225-T-C **
10940844-T-A **
10934799-G-C **
6264478-T-G 6396437-T-G IR3_Dst **
10979614-T-C **
10979601-G-C **
10934742-A-T **
8295526-C-A 8427485-C-A **
7414276-TCAAA-T 7546235-TCAAA-T **
24045940-G-C 21899793-G-C **
6510259-C-G 6642218-C-G **
6328305-GCACA-G 6460264-GCACA-G IR3_Dst **
13255352-G-C 11099676-G-C **
10785313-C-G **
10785303-C-G **
10785268-C-A **
10988652-C-T **
3605935-A-C 3737894-A-C **
3605873-C-A 3737832-C-A **
3728457-G-T 3860416-G-T **
10653608-C-A **
10746855-C-A **
10686221-CCT-C **
10684255-ACTCTG-A **
10684221-T-TTCCTC **
10683369-T-A **
10682500-T-TC **
10677550-T-G **
10677234-C-T **
24235418-A-T 22089271-A-T P3_b1 **
10672062-T-TC **
10672061-G-A **
10669507-T-TCGGTTTTATA **
10669497-T-G **
10061507-G-T 10223898-G-T **
13710766-G-A 11555090-G-A **
10057960-C-T 10220351-C-T **
9997918-G-T 10160309-G-T **
9953197-T-A 10115588-T-A FT270000 **
9941363-T-G 10103754-T-G **
9930471-G-T 10092862-G-T **
9930419-G-T 10092810-G-T **
9928303-C-G 10090694-C-G **
9551441-T-TG 9713832-T-TG IR3_Prx **
9501187-T-G 9663578-T-G **
9361075-C-T 9523466-C-T **
8827194-G-T 8959153-G-T **
8827191-A-T 8959150-A-T **
3843359-G-T 3975318-G-T **
10756697-T-A **
10760320-C-A **
8739592-A-G 8871551-A-G **
10823481-T-C **
10893536-T-A **
10893522-G-A **
10882821-C-A **
10852283-G-C **
10852276-A-C **
10846982-C-A **
10844278-C-T **
10844238-C-A **
10831756-C-G **
10828698-T-G **
10824574-T-G **
10823504-C-A **
10823484-C-A **
10823476-C-T **
10760987-C-G **
10816019-C-A **
10810621-C-A **
10805150-C-A **
10798812-C-T **
10798240-C-G **
10793382-G-T **
10791401-C-A **
10789571-C-G **
10786973-C-A **
10778946-C-A **
10776394-T-G **
10772761-C-A **
10762979-T-C **
8807449-C-A 8939408-C-A **
8822506-G-T 8954465-G-T **
8712877-T-A 8844836-T-A **
5170671-T-G 5302630-T-G **
6297947-C-A 6429906-C-A IR3_Dst **
6279445-C-A 6411404-C-A IR3_Dst **
6228322-C-A 6360281-C-A IR3_Dst **
6228198-T-TAA 6360157-T-TAA IR3_Dst **
6223132-T-A 6355091-T-A IR3_Dst **
6106063-A-ATC 6238022-A-ATC **
5927207-C-A 6059166-C-A **
5824857-C-A 5956816-C-A **
5803267-T-G 5935226-T-G **
5507873-T-A 5639832-T-A **
5358785-C-A 5490744-C-A **
5243769-A-C 5375728-A-C **
5188674-T-G 5320633-T-G **
4968175-C-A 5100134-C-A **
6512019-C-A 6643978-C-A **
4871099-C-G 5003058-C-G **
4861883-C-A 4993842-C-A **
4558343-C-A 4690302-C-A **
4540813-T-A 4672772-T-A **
16065270-G-T 13953390-G-T **
4502279-T-G 4634238-T-G **
4502176-T-G 4634135-T-G **
14017504-C-A 11896798-C-A **
4470607-C-A 4602566-C-A **
4271618-A-T 4403577-A-T **
4241871-C-A 4373830-C-A **
4229341-T-A 4361300-T-A **
4103170-A-T 4235129-A-T **
4078695-G-T 4210654-G-T **
6297952-C-A 6429911-C-A IR3_Dst **
6310789-A-AG 6442748-A-AG IR3_Dst **
6512112-T-G 6644071-T-G **
7165436-C-A 7297395-C-A **
8159104-C-A 8291063-C-A **
8153898-C-G 8285857-C-G **
8153873-T-C 8285832-T-C **
7990369-G-T 8122328-G-T **
7755191-C-A 7887150-C-A **
7755056-T-G 7887015-T-G **
7590660-T-G 7722619-T-G **
7578928-C-A 7710887-C-A **
7390159-C-A 7522118-C-A **
7311335-ATTCCTTCCTTCCTTCC-A 7443294-ATTCCTTCCTTCCTTCC-A 11×TTCC**
7288040-C-A 7419999-C-A **
7218255-C-A 7350214-C-A **
7170031-C-T 7301990-C-T **
7166850-C-A 7298809-C-A **
9919261-T-G 10081652-T-G **
10896158-A-T **
6770758-A-ATTT 6902717-A-ATTT 14×T**
7045673-T-A 7177632-T-A **
6576637-T-G 6708596-T-G **
7020733-C-A 7152692-C-A **
6976001-C-A 7107960-C-A **
6903320-T-G 7035279-T-G **
6634255-T-G 6766214-T-G **
6828738-A-C 6960697-A-C **
6642668-C-A 6774627-C-A **
56826694-TTTGCATCCATTCAA-T,TTTGTTCATTCTA ***
6403579-C-A 6535538-C-A ***
25793925-C-T 23647778-C-T P1_b3 ***
22264487-C-T 20102601-C-T DYZ19 ***
56827657-G-T ***
9943383-T-C 10105774-T-C PF2906 ***
13642460-C-A 11486784-C-A ***
18039366-ATTTTTTTTT-A 15927486-ATTTTTTTTT-A 30×T***
26033810-T-C 23887663-T-C P1_Y1 ***
13488762-C-T 11333086-C-T ***
28807460-G-C 26661313-G-C BY27593 ***
13471845-G-GT 11316169-G-GT ***
14338973-CTCCT-C 12218268-CTCCT-C 4×TCCT***
9935192-A-G 10097583-A-G ***
28581605-C-A 26435458-C-A ***
10885122-T-A,C ***
10789359-C-G ***
10987831-T-TCCCC ***
10999081-C-A ***
10672618-C-A ***
10669496-C-A ***
13643161-C-A 11487485-C-A ***
13811130-A-T 11690424-A-T ***
14187317-C-A 12066611-C-A ***
15211083-G-T 13099169-G-T ***
15279206-GT-G,GTT 13167305-GT-G,GTT 13×T***
15396782-C-A 13284902-C-A ***
16533423-C-A 14421543-C-A ***
16929625-G-T 14817745-G-T ***
17547662-C-A 15435782-C-A ***
10885167-GA-CA,G ***
18255961-G-T 16144081-G-T ***
18687757-C-A 16575877-C-A ***
19071679-C-A 16959799-C-A ***
13811127-T-C 11690421-T-C ***
17385299-C-A 15273419-C-A ***
11643742-T-A ***
22902108-CAA-C,CAAA 20740222-CAA-C,CAAA 17×A***
10987815-A-C ***
22849491-CT-C,CTT 20687605-CT-C,CTT 20×T***
6427298-C-A 6559257-C-A ***
22127975-CTTTTT-C 19966089-CTTTTT-C 20×T***
11677737-C-A ***
56833160-CCATTG-C,CCACTG ***
13811138-G-T 11690432-G-T ***
25271772-CAA-C 23125625-CAA-C P2_r1 22×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 7128741089378579621778065414
Kit: 712874998725881389618009067
Used in age calculations1089378581389618065414
Counts of SNPs87
Variant counts last updated 2020-06-19 03:12:55.


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