Quigley
FTDNA: 297270, BigY2: 297270Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 297270 | BigY2 297270 |
---|---|---|---|---|---|---|---|---|---|
24006947-G-A | 21860800-G-A | Y112645 | Y | + | + | ||||
14612455-TGATAGATAGATAGATA-T | 12500661-TGATAGATA-T | 14×GATA | *** | + | |||||
15917-C-A | + | ||||||||
19335987-G-A | 17224107-G-A | Y104437 | Y | Y | + | + | |||
16528625-C-T | 14416745-C-T | BY156574 | Y | Y | + | + | |||
9734874-G-A | 9897265-G-A | BY80605 | IR3_Prx | + | + | ||||
7053135-CA-C | 7185094-CA-C | + | + | ||||||
22737392-G-A | 20575506-G-A | Y109608 | Y | Y | + | + | |||
14937823-A-ATTTTCTTTTCTTTTC | 12825888-A-ATTTTC | 10×TTTTC | *** | * | |||||
14432253-G-A | 12311526-G-A | ** | |||||||
14352777-C-A | 12232072-C-A | ** | |||||||
14356427-C-G | 12235722-C-G | ** | |||||||
14376155-C-A | 12255451-C-A | ** | |||||||
14404812-A-T | 12284109-A-T | ** | |||||||
14421910-C-A | 12301185-C-A | ** | |||||||
14432042-C-A | 12311315-C-A | ** | |||||||
10947116-A-G | ** | ||||||||
14452790-C-A | 12332063-C-A | ** | |||||||
14461192-A-G | 12340465-A-G | ** | |||||||
14518785-G-T | 12406986-G-T | ** | |||||||
14527796-G-T | 12415997-G-T | ** | |||||||
14527820-T-C | 12416021-T-C | ** | |||||||
14532049-A-G | 12420250-A-G | ** | |||||||
14552225-C-A | 12440426-C-A | ** | |||||||
14553222-C-A | 12441423-C-A | ** | |||||||
14553236-C-A | 12441437-C-A | ** | |||||||
14557436-C-T | 12445637-C-T | ** | |||||||
14557463-T-A | 12445664-T-A | ** | |||||||
14557510-C-A | 12445711-C-A | ** | |||||||
14499479-C-T | 12387684-C-T | ** | |||||||
14184543-C-A | 12063837-C-A | ** | |||||||
14313544-C-A | 12192838-C-A | ** | |||||||
13952524-T-C | 11831818-T-C | ** | |||||||
11677039-A-T | FT451468 | ** | |||||||
13847034-A-C | 11726328-A-C | ** | |||||||
13870533-G-C | 11749827-G-C | ** | |||||||
13880058-C-A | 11759352-C-A | ** | |||||||
13909901-C-A | 11789195-C-A | ** | |||||||
13919756-GT-G | 11799050-GT-G | ** | |||||||
13931960-A-G | 11811254-A-G | ** | |||||||
13938688-A-G | 11817982-A-G | ** | |||||||
13939119-A-C | 11818413-A-C | ** | |||||||
14011257-A-T | 11890551-A-T | ** | |||||||
14273991-C-T | 12153285-C-T | FT47947 | ** | ||||||
14032203-G-T | 11911497-G-T | ** | |||||||
14035127-A-G | 11914421-A-G | ** | |||||||
14055463-C-A | 11934757-C-A | ** | |||||||
14076840-C-T | 11956134-C-T | ** | |||||||
14076925-G-A | 11956219-G-A | ** | |||||||
14120510-G-A | 11999804-G-A | ** | |||||||
14128312-C-A | 12007606-C-A | ** | |||||||
14582243-C-A | 12470443-C-A | ** | |||||||
14196445-C-G | 12075739-C-G | ** | |||||||
14255539-G-T | 12134833-G-T | ** | |||||||
14568229-C-A | 12456429-C-A | ** | |||||||
14730324-G-C | 12618392-G-C | ** | |||||||
14586179-G-T | 12474379-G-T | ** | |||||||
15400129-A-C | 13288249-A-C | ** | |||||||
15209352-C-A | 13097438-C-A | ** | |||||||
15210985-T-C | 13099071-T-C | ** | |||||||
15221938-C-A | 13110024-C-A | ** | |||||||
15239658-T-A | 13127744-T-A | ** | |||||||
15259088-C-A | 13147172-C-A | ** | |||||||
15280709-G-A | 13168808-G-A | Y27897 | ** | ||||||
15288830-T-A | 13176929-T-A | ** | |||||||
15366933-G-T | 13255053-G-T | ** | |||||||
15380113-C-G | 13268233-C-G | ** | |||||||
15406651-C-A | 13294771-C-A | ** | |||||||
15185175-T-C | 13073261-T-C | ** | |||||||
15439929-G-T | 13328049-G-T | ** | |||||||
15498722-G-A | 13386842-G-A | ** | |||||||
15597639-T-C | 13485759-T-C | ** | |||||||
15653469-G-T | 13541589-G-T | ** | |||||||
15669908-C-A | 13558028-C-A | ** | |||||||
15684338-C-A | 13572458-C-A | ** | |||||||
15712392-T-C | 13600512-T-C | ** | |||||||
15755269-T-A | 13643389-T-A | ** | |||||||
15755277-C-A | 13643397-C-A | ** | |||||||
15188344-C-T | 13076430-C-T | ** | |||||||
15178534-C-A | 13066620-C-A | ** | |||||||
14593526-C-A | 12481726-C-A | ** | |||||||
23197967-G-T | 21036081-G-T | ** | |||||||
14606486-C-A | 12494688-C-A | ** | |||||||
14667813-C-A | 12555878-C-A | ** | |||||||
14712037-C-A | 12600104-C-A | ** | |||||||
11667324-T-C | ** | ||||||||
14771667-G-TTTT | 12659736-G-TTTT | ** | |||||||
14785564-A-T | 12673634-A-T | ** | |||||||
14785598-A-T | 12673668-A-T | ** | |||||||
14826539-G-A | 12714606-G-A | ** | |||||||
14858775-C-A | 12746841-C-A | ** | |||||||
14986569-A-T | 12874637-A-T | ** | |||||||
15168111-T-A | 13056197-T-A | ** | |||||||
15012296-C-A | 12900384-C-A | BY99082 | 17×T | ** | |||||
15080955-G-A | 12969045-G-A | ** | |||||||
15103686-C-A | 12991774-C-A | ** | |||||||
15109671-G-T | 12997758-G-T | ** | |||||||
23029940-C-A | 20868054-C-A | ** | |||||||
15126915-A-T | 13015002-A-T | ** | |||||||
15127117-T-G | 13015204-T-G | ** | |||||||
15138062-A-T | 13026149-A-T | ** | |||||||
15168066-C-G | 13056152-C-G | ** | |||||||
23421149-G-A | 21259263-G-A | ** | |||||||
13588409-A-G | 11432733-A-G | ** | |||||||
11648160-A-G | ** | ||||||||
10934076-C-A | ** | ||||||||
10887482-G-T | ** | ||||||||
10893744-T-G | ** | ||||||||
10896346-T-G | ** | ||||||||
10896369-C-T | ** | ||||||||
10899999-T-A | ** | ||||||||
10900748-T-A | ** | ||||||||
10926925-C-A | ** | ||||||||
10926939-A-C | ** | ||||||||
10926945-A-T | ** | ||||||||
10945043-C-A | ** | ||||||||
10884266-C-G | FT47040 | ** | |||||||
24363685-C-A | 22217538-C-A | ** | |||||||
10950401-C-A | ** | ||||||||
10950423-A-G | ** | ||||||||
10954154-T-C | ** | ||||||||
10954730-G-T | ** | ||||||||
10955164-T-C | ** | ||||||||
10965012-C-A | ** | ||||||||
10965036-G-C | ** | ||||||||
10965042-A-C | ** | ||||||||
10884313-T-G | ** | ||||||||
10884262-C-A | ** | ||||||||
10984829-C-A | ** | ||||||||
10833709-C-T | ** | ||||||||
25466767-A-G | 23320620-A-G | P2_r2 | ** | ||||||
25466762-C-A | 23320615-C-A | P2_r2 | ** | ||||||
24600685-A-C | 22454538-A-C | P3_t2 | ** | ||||||
10797806-T-C | ** | ||||||||
10802345-C-A | ** | ||||||||
10818507-A-G | ** | ||||||||
10827990-A-C | ** | ||||||||
10827994-A-G | ** | ||||||||
10828007-T-C | ** | ||||||||
10843390-T-C | ** | ||||||||
10880193-A-C | ** | ||||||||
10844869-A-G | ** | ||||||||
10848290-G-T | ** | ||||||||
10851015-C-A | ** | ||||||||
10855781-C-T | ** | ||||||||
10860243-C-A | ** | ||||||||
24595402-G-A | 22449255-G-A | P3_t2 | ** | ||||||
24422449-C-A | 22276302-C-A | ** | |||||||
10865674-T-G | ** | ||||||||
10875200-C-A | ** | ||||||||
10979608-C-A | ** | ||||||||
10984922-T-C | ** | ||||||||
13707379-A-C | 11551703-A-C | ** | |||||||
13522065-G-C | 11366389-G-C | ** | |||||||
13302324-C-A | 11146648-C-A | ** | |||||||
13325986-C-A | 11170310-C-A | ** | |||||||
13326193-G-T | 11170517-G-T | ** | |||||||
13460985-A-G | 11305309-A-G | ** | |||||||
13472058-G-C | 11316382-G-C | ** | |||||||
23723534-G-A | 21561648-G-A | ** | |||||||
23446942-C-A | 21285056-C-A | ** | |||||||
13486880-CTTTTTTT-C | 11331204-CTTTTTTT-C | 26×T | ** | ||||||
13510054-A-G | 11354378-A-G | ** | |||||||
13523563-C-A | 11367887-C-A | ** | |||||||
13248802-C-A | 11093126-C-A | ** | |||||||
23439832-C-A | 21277946-C-A | ** | |||||||
13555882-C-A | 11400206-C-A | ** | |||||||
13558305-C-T | 11402629-C-T | ** | |||||||
13566685-G-C | 11411009-G-C | ** | |||||||
13586105-C-A | 11430429-C-A | ** | |||||||
15781787-AT-A | 13669907-AT-A | ** | |||||||
13624064-A-G | 11468388-A-G | ** | |||||||
13633116-G-A | 11477440-G-A | ** | |||||||
13642365-C-A | 11486689-C-A | ** | |||||||
13273088-A-T | 11117412-A-T | ** | |||||||
13233471-C-G | 11077795-C-G | ** | |||||||
10986393-C-A | ** | ||||||||
11006400-A-ACTGCAC | ** | ||||||||
10989628-C-A | ** | ||||||||
10989636-C-G | ** | ||||||||
10992679-C-A | ** | ||||||||
10994305-A-C | ** | ||||||||
10995894-A-T | ** | ||||||||
10996108-C-T | ** | ||||||||
10998043-C-A | ** | ||||||||
11002065-C-T | ** | ||||||||
11002261-A-C | ** | ||||||||
11006403-TC-T | ** | ||||||||
23723538-C-A | 21561652-C-A | ** | |||||||
11006423-C-G | ** | ||||||||
11016578-C-T | ** | ||||||||
11019761-C-T | ** | ||||||||
11019776-C-T | ** | ||||||||
11027327-A-T | ** | ||||||||
11030326-A-T | ** | ||||||||
11030535-T-C | ** | ||||||||
23723543-G-T | 21561657-G-T | ** | |||||||
13205290-C-A | 11049614-C-A | ** | |||||||
15756266-C-A | 13644386-C-A | ** | |||||||
15927805-C-A | 13815925-C-A | ** | |||||||
15834220-A-G | 13722340-A-G | ** | |||||||
20500955-A-T | 18339069-A-T | P5_Dst | ** | ||||||
19506951-C-TA | 17395071-C-TA | ** | |||||||
19528371-A-T | 17416491-A-T | ** | |||||||
19982087-G-T | 17870207-G-T | P5_Prx | ** | ||||||
19982159-A-AT | 17870279-A-AT | P5_Prx | ** | ||||||
20409633-A-G | 18247747-A-G | P5_Dst | ** | ||||||
20409634-T-C | 18247748-T-C | P5_Dst | ** | ||||||
20409648-C-A | 18247762-C-A | P5_Dst | ** | ||||||
20409659-C-A | 18247773-C-A | P5_Dst | ** | ||||||
20420674-A-T | 18258788-A-T | P5_Dst | ** | ||||||
20574846-A-C | 18412960-A-C | P5_Dst | ** | ||||||
19464569-C-T | 17352689-C-T | ** | |||||||
20574865-G-A | 18412979-G-A | P5_Dst | ** | ||||||
20655170-C-A | 18493284-C-A | P4_Prx | ** | ||||||
20707547-A-G | 18545661-A-G | P4_Prx | ** | ||||||
21014350-A-AG | 18852464-A-AG | P4_Dst | ** | ||||||
21037389-A-T | 18875503-A-T | ** | |||||||
21149638-G-A | 18987752-G-A | ** | |||||||
21163052-A-T | 19001166-A-T | ** | |||||||
21163105-G-A | 19001219-G-A | ** | |||||||
21187367-C-A | 19025481-C-A | ** | |||||||
19465744-C-T | 17353864-C-T | ** | |||||||
19460527-A-C | 17348647-A-C | ** | |||||||
21208819-G-A | 19046933-G-A | ** | |||||||
19071323-C-A | 16959443-C-A | ** | |||||||
18793995-C-A | 16682115-C-A | ** | |||||||
18794012-C-A | 16682132-C-A | ** | |||||||
18848531-C-A | 16736651-C-A | ** | |||||||
18892163-G-C | 16780283-G-C | ** | |||||||
18902829-C-T | 16790949-C-T | ** | |||||||
18990651-C-A | 16878771-C-A | ** | |||||||
18994501-G-T | 16882621-G-T | ** | |||||||
19009263-C-A | 16897383-C-A | ** | |||||||
19036753-T-G | 16924873-T-G | ** | |||||||
19075606-A-G | 16963726-A-G | ** | |||||||
19459425-T-A | 17347545-T-A | ** | |||||||
19075620-A-T | 16963740-A-T | ** | |||||||
19146570-T-TC | 17034690-T-TC | ** | |||||||
19146627-G-A | 17034747-G-A | ** | |||||||
19168773-G-A | 17056893-G-A | ** | |||||||
19271362-A-G | 17159482-A-G | ** | |||||||
19304679-C-A | 17192799-C-A | ** | |||||||
19310359-A-T | 17198479-A-T | ** | |||||||
19415506-C-A | 17303626-C-A | ** | |||||||
19438602-G-A | 17326722-G-A | ** | |||||||
21200877-G-A | 19038991-G-A | ** | |||||||
21208821-A-G | 19046935-A-G | ** | |||||||
18749455-T-A | 16637575-T-A | ** | |||||||
22241495-A-C | 20079609-A-C | DYZ19 | ** | ||||||
22155589-T-A | 19993703-T-A | ** | |||||||
22170551-T-C | 20008665-T-C | ** | |||||||
22170553-C-A | 20008667-C-A | ** | |||||||
22172324-A-G | 20010438-A-G | ** | |||||||
22203766-A-G | 20041880-A-G | ** | |||||||
22211993-C-A | 20050107-C-A | ** | |||||||
22241460-C-A | 20079574-C-A | DYZ19 | ** | ||||||
22241466-A-G | 20079580-A-G | DYZ19 | ** | ||||||
22241476-C-A | 20079590-C-A | DYZ19 | ** | ||||||
22420223-C-G | 20258337-C-G | FGC81424 | DYZ19 | ** | |||||
22075852-G-T | 19913966-G-T | ** | |||||||
22423424-A-C | 20261538-A-C | DYZ19 | ** | ||||||
22425534-A-T | 20263648-A-T | DYZ19 | ** | ||||||
22490272-T-C | 20328386-T-C | DYZ19 | ** | ||||||
22588019-A-C | 20426133-A-C | ** | |||||||
22668926-A-G | 20507040-A-G | ** | |||||||
22611351-A-G | 20449465-A-G | ** | |||||||
22614900-C-A | 20453014-C-A | ** | |||||||
22619327-C-T | 20457441-C-T | ** | |||||||
22619345-G-A | 20457459-G-A | ** | |||||||
22722523-T-C | 20560637-T-C | ** | |||||||
22063910-A-G | 19902024-A-G | ** | |||||||
21211231-T-C | 19049345-T-C | ** | |||||||
21552403-T-A | 19390517-T-A | ** | |||||||
21238595-G-C | 19076709-G-C | ** | |||||||
21238609-G-C | 19076723-G-C | ** | |||||||
21392284-T-G | 19230398-T-G | ** | |||||||
21422219-A-T | 19260333-A-T | ** | |||||||
21422224-T-C | 19260338-T-C | ** | |||||||
21435353-A-G | 19273467-A-G | ** | |||||||
22730567-C-A | 20568681-C-A | ** | |||||||
21497594-G-T | 19335708-G-T | ** | |||||||
21515637-C-T | 19353751-C-T | ** | |||||||
21596552-C-A | 19434666-C-A | ** | |||||||
22060371-C-A | 19898485-C-A | ** | |||||||
21747323-C-A | 19585437-C-A | ** | |||||||
22730463-C-A | 20568577-C-A | ** | |||||||
21902089-G-T | 19740203-G-T | ** | |||||||
21910118-T-C | 19748232-T-C | ** | |||||||
21911390-C-A | 19749504-C-A | ** | |||||||
22729487-T-G | 20567601-T-G | ** | |||||||
21987312-C-A | 19825426-C-A | ** | |||||||
22010196-C-A | 19848310-C-A | ** | |||||||
22037616-C-A | 19875730-C-A | ** | |||||||
18756254-C-A | 16644374-C-A | ** | |||||||
18711606-A-G | 16599726-A-G | ** | |||||||
15834266-G-T | 13722386-G-T | ** | |||||||
22876482-C-A | 20714596-C-A | ** | |||||||
16432809-C-T | 14320929-C-T | ** | |||||||
16451656-A-G | 14339776-A-G | ** | |||||||
16490029-C-A | 14378149-C-A | ** | |||||||
16528260-AG-A | 14416380-AG-A | ** | |||||||
16621460-G-T | 14509580-G-T | ** | |||||||
16645775-T-G | 14533895-T-G | ** | |||||||
16675854-C-A | 14563974-C-A | ** | |||||||
16701674-C-G | 14589794-C-G | ** | |||||||
16843146-C-A | 14731266-C-A | ** | |||||||
16926174-A-T | 14814294-A-T | ** | |||||||
16412311-C-A | 14300431-C-A | ** | |||||||
16932954-C-A | 14821074-C-A | ** | |||||||
16952755-C-A | 14840875-C-A | ** | |||||||
16987054-C-A | 14875174-C-A | ** | |||||||
17029432-T-C | 14917552-T-C | ** | |||||||
17030981-C-A | 14919101-C-A | ** | |||||||
17067915-G-T | 14956035-G-T | Y98102 | ** | ||||||
17083198-C-A | 14971318-C-A | ** | |||||||
17089065-C-A | 14977185-C-A | ** | |||||||
17090713-C-A | 14978833-C-A | ** | |||||||
16425899-C-A | 14314019-C-A | ** | |||||||
16336948-G-A | 14225068-G-A | ** | |||||||
17100318-A-G | 14988438-A-G | ** | |||||||
16079226-A-G | 13967346-A-G | ** | |||||||
15834358-C-A | 13722478-C-A | ** | |||||||
15866170-T-A | 13754290-T-A | ** | |||||||
22963647-T-A | 20801761-T-A | ** | |||||||
25849171-T-A | 23703024-T-A | P1_Y1 | ** | ||||||
15971339-C-A | 13859459-C-A | ** | |||||||
15982133-G-T | 13870253-G-T | ** | |||||||
15982147-A-G | 13870267-A-G | ** | |||||||
16007122-C-A | 13895242-C-A | ** | |||||||
16070233-A-C | 13958353-A-C | ** | |||||||
16084151-G-T | 13972271-G-T | ** | |||||||
16279426-T-A | 14167546-T-A | ** | |||||||
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16177136-C-A | 14065256-C-A | ** | |||||||
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18707991-T-A | 16596111-T-A | ** | |||||||
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22857406-C-A | 20695520-C-A | ** | |||||||
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17637738-C-A | 15525858-C-A | ** | |||||||
18196289-C-T | 16084409-C-T | ** | |||||||
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18443630-C-A | 16331750-C-A | P6_Dst | ** | ||||||
18564895-C-T | 16453015-C-T | ** | |||||||
18565364-A-C | 16453484-A-C | ** | |||||||
22816164-T-G | 20654278-T-G | ** | |||||||
18627678-C-A | 16515798-C-A | ** | |||||||
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17648322-T-C | 15536442-T-C | ** | |||||||
17633334-C-A | 15521454-C-A | ** | |||||||
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17466722-T-G | 15354842-T-G | ** | |||||||
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17505542-C-A | 15393662-C-A | ** | |||||||
17549375-A-C | 15437495-A-C | ** | |||||||
17580889-G-C | 15469009-G-C | ** | |||||||
10796648-A-C | ** | ||||||||
25849312-T-G | 23703165-T-G | P1_Y1 | ** | ||||||
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10748184-C-T | ** | ||||||||
22249892-G-A | 20088006-G-A | DYZ19 | ** | ||||||
7167649-C-A | 7299608-C-A | ** | |||||||
9056293-T-A | ** | ||||||||
7385341-C-A | 7517300-C-A | ** | |||||||
14771680-G-T | 12659749-G-T | ** | |||||||
22241494-C-A | 20079608-C-A | DYZ19 | ** | ||||||
10979612-C-A | ** | ||||||||
7704908-C-A | 7836867-C-A | ** | |||||||
10748175-C-G | ** | ||||||||
10748246-T-C | ** | ||||||||
7897184-G-T | 8029143-G-T | ** | |||||||
16441049-C-A | 14329169-C-A | ** | |||||||
26391579-T-C | 24245432-T-C | P1_Y1 | ** | ||||||
4223327-C-A | 4355286-C-A | ** | |||||||
27889356-G-C | 25743209-G-C | P1_Y2 | ** | ||||||
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56844002-T-G | ** | ||||||||
2669656-C-A | 2801615-C-A | ** | |||||||
2672537-C-A | 2804496-C-A | ** | |||||||
2684418-T-C | 2816377-T-C | ** | |||||||
15756311-C-A | 13644431-C-A | ** | |||||||
24381365-C-A | 22235218-C-A | ** | |||||||
2701297-A-C | 2833256-A-C | ** | |||||||
5426382-C-CT | 5558341-C-CT | ** | |||||||
8043252-C-A | 8175211-C-A | ** | |||||||
10754963-A-AC | ** | ||||||||
10754964-T-TCCGC | ** | ||||||||
16605032-C-A | 14493152-C-A | ** | |||||||
28506744-C-A | 26360597-C-A | ** | |||||||
28781421-C-A | 26635274-C-A | ** | |||||||
14786562-C-A | 12674632-C-A | ** | |||||||
28479071-A-G | 26332924-A-G | FT411548 | ** | ||||||
28460973-C-A | 26314826-C-A | ** | |||||||
16450380-C-A | 14338500-C-A | ** | |||||||
4389397-T-A | 4521356-T-A | ** | |||||||
20761015-A-AC | 18599129-A-AC | P4_Prx | ** | ||||||
10760350-T-TGCTCA | ** | ||||||||
28429429-A-C | 26283282-A-C | P1_gr2 | ** | ||||||
6454462-C-A | 6586421-C-A | ** | |||||||
27889382-A-C | 25743235-A-C | P1_Y2 | ** | ||||||
2855457-A-C | 2987416-A-C | ** | |||||||
27889375-T-C | 25743228-T-C | P1_Y2 | ** | ||||||
25200955-G-A | 23054808-G-A | g1 | ** | ||||||
2817042-A-C | 2949001-A-C | ** | |||||||
2697381-G-C | 2829340-G-C | ** | |||||||
2708572-C-A | 2840531-C-A | ** | |||||||
13941528-C-A | 11820822-C-A | ** | |||||||
3990697-A-C | 4122656-A-C | ** | |||||||
3606094-C-T | 3738053-C-T | ** | |||||||
3609728-C-A | 3741687-C-A | ** | |||||||
3610279-C-A | 3742238-C-A | ** | |||||||
3710950-T-C | 3842909-T-C | ** | |||||||
3782313-C-A | 3914272-C-A | ** | |||||||
3782356-C-A | 3914315-C-A | ** | |||||||
3850283-C-A | 3982242-C-A | ** | |||||||
3903703-G-A | 4035662-G-A | ** | |||||||
3932431-G-T | 4064390-G-T | ** | |||||||
4063859-G-A | 4195818-G-A | FGC73798 | ** | ||||||
3390582-G-T | 3522541-G-T | ** | |||||||
27872502-C-T | 25726355-C-T | P1_Y2 | ** | ||||||
4080981-G-T | 4212940-G-T | FT144967 | ** | ||||||
4136960-C-A | 4268919-C-A | ** | |||||||
4178077-C-A | 4310036-C-A | ** | |||||||
4223843-A-G | 4355802-A-G | ** | |||||||
4229437-T-G | 4361396-T-G | ** | |||||||
4320626-T-G | 4452585-T-G | FT200484 | ** | ||||||
4320638-A-G | 4452597-A-G | ** | |||||||
4357455-C-A | 4489414-C-A | ** | |||||||
3550572-C-T | 3682531-C-T | ** | |||||||
3389878-C-A | 3521837-C-A | ** | |||||||
27883455-C-A | 25737308-C-A | P1_Y2 | ** | ||||||
2940898-G-T | 3072857-G-T | ** | |||||||
2767824-C-A | 2899783-C-A | ** | |||||||
2773850-C-A | 2905809-C-A | 11×A | ** | ||||||
2817047-A-C | 2949006-A-C | ** | |||||||
2835607-CTTTT-C | 2967566-CTTTT-C | 16×T | ** | ||||||
2852525-C-A | 2984484-C-A | ** | |||||||
2858911-C-G | 2990870-C-G | ** | |||||||
2858930-A-C | 2990889-A-C | ** | |||||||
2865768-A-G | 2997727-A-G | ** | |||||||
27872523-G-A | 25726376-G-A | P1_Y2 | ** | ||||||
2960085-A-T | 3092044-A-T | ** | |||||||
3389873-T-C | 3521832-T-C | ** | |||||||
3047422-C-A | 3179381-C-A | ** | |||||||
3061241-G-T | 3193200-G-T | ** | |||||||
3074943-A-T | 3206902-A-T | ** | |||||||
3122659-T-G | 3254618-T-G | ** | |||||||
3276355-C-G | 3408314-C-G | ** | |||||||
3334740-G-T | 3466699-G-T | ** | |||||||
3343852-T-A | 3475811-T-A | ** | |||||||
3343856-G-A | 3475815-G-A | ** | |||||||
3343961-T-C | 3475920-T-C | ** | |||||||
3359655-G-T | 3491614-G-T | ** | |||||||
10808985-C-A | ** | ||||||||
21238605-A-C | 19076719-A-C | ** | |||||||
22649485-A-G | 20487599-A-G | ** | |||||||
23098809-T-C | 20936923-T-C | ** | |||||||
28608569-G-C | 26462422-G-C | ** | |||||||
23386455-C-A | 21224569-C-A | ** | |||||||
15592798-C-A | 13480918-C-A | ** | |||||||
10987291-C-A | ** | ||||||||
28570359-C-A | 26424212-C-A | ** | |||||||
4687998-C-A | 4819957-C-A | ** | |||||||
16052830-C-A | 13940950-C-A | ** | |||||||
20892326-A-AG | 18730440-A-AG | P4_Dst | ** | ||||||
28583722-G-T | 26437575-G-T | ** | |||||||
10801386-G-A | ** | ||||||||
28614824-C-T | 26468677-C-T | ** | |||||||
10801389-T-C | ** | ||||||||
10801401-C-T | ** | ||||||||
10801404-G-C | ** | ||||||||
10801413-G-C | ** | ||||||||
10801431-T-A | ** | ||||||||
11038122-CTCAAT-C | ** | ||||||||
17634658-C-A | 15522778-C-A | ** | |||||||
11006414-A-C | ** | ||||||||
28097005-T-TC | 25950858-T-TC | P1_Y2 | ** | ||||||
28614809-A-T | 26468662-A-T | ** | |||||||
28644572-T-G | 26498425-T-G | ** | |||||||
11038112-C-T | ** | ||||||||
13527647-A-G | 11371971-A-G | ** | |||||||
13865739-C-G | 11745033-C-G | ** | |||||||
24485700-A-T | 22339553-A-T | ** | |||||||
14423856-A-T | 12303131-G-T | ** | |||||||
10158-G-A | ** | ||||||||
14359923-G-A | 12239218-G-A | 14×A | ** | ||||||
22537007-C-A | 20375121-C-A | ** | |||||||
56849118-G-T | ** | ||||||||
27889347-AGC-A | 25743200-AGC-A | P1_Y2 | ** | ||||||
56845021-C-A | ** | ||||||||
4957647-C-A | 5089606-C-A | ** | |||||||
28742404-C-A | 26596257-C-A | ** | |||||||
56836528-CCTTC-A | ** | ||||||||
22292116-C-T | 20130230-C-T | DYZ19 | ** | ||||||
16897642-T-A | 14785762-T-A | ** | |||||||
16423669-C-A | 14311789-C-A | ** | |||||||
56825733-GTGTGTACATATATATATATATATATATATATGGTTCCAT-G | ** | ||||||||
28798872-G-C | 26652725-G-C | ** | |||||||
28798718-G-C | 26652571-G-C | ** | |||||||
21996231-T-C | 19834345-T-C | PR6994 | ** | ** | |||||
28759666-A-C | 26613519-A-C | ** | |||||||
11038107-T-A | ** | ||||||||
28549687-G-C | 26403540-G-C | ** | |||||||
10764684-C-A | ** | ||||||||
10796653-A-T | ** | ||||||||
14409042-C-A | 12288339-C-A | ** | |||||||
7013558-C-A | 7145517-C-A | ** | |||||||
28800763-C-A | 26654616-C-A | ** | |||||||
10759957-T-A | ** | ||||||||
13596966-G-T | 11441290-G-T | ** | |||||||
10748231-C-G | ** | ||||||||
28530703-A-G | 26384556-A-G | ** | |||||||
56851208-T-A | ** | ||||||||
11004414-C-T | ** | ||||||||
28516558-GC-G | 26370411-GC-G | ** | |||||||
23804416-T-C | 21642530-T-C | ** | |||||||
3405458-C-A | 3537417-C-A | ** | |||||||
21238611-T-G | 19076725-T-G | ** | |||||||
5923867-C-A | 6055826-C-A | ** | |||||||
28515321-C-A | 26369174-C-A | ** | |||||||
18969372-G-A | 16857492-G-A | ** | |||||||
5935747-C-A | 6067706-C-A | ** | |||||||
10916377-C-A | ** | ||||||||
13385079-C-CT | 11229403-C-CT | 14×T | ** | ||||||
24264553-A-C | 22118406-A-C | P3_b1 | ** | ||||||
17193253-T-G | 15081373-T-G | ** | |||||||
2810390-GA-T | 2942349-GA-T | ** | |||||||
10847027-C-A | ** | ||||||||
28544880-T-G | 26398733-T-G | ** | |||||||
16602658-C-A | 14490778-C-A | ** | |||||||
6699001-C-A | 6830960-C-A | ** | |||||||
13854482-C-A | 11733776-C-A | ** | |||||||
6675805-C-A | 6807764-C-A | ** | |||||||
16704409-C-A | 14592529-C-A | ** | |||||||
28778854-T-TC | 26632707-T-TC | ** | |||||||
28546752-T-C | 26400605-T-C | ** | |||||||
13945229-C-A | 11824523-C-A | ** | |||||||
18993303-C-A | 16881423-C-A | ** | |||||||
20022466-T-C | 17910586-T-C | P5_Prx | ** | ||||||
23442774-C-A | 21280888-C-A | ** | |||||||
9424592-T-A | 9586983-T-A | ** | |||||||
56858140-AC-A | ** | ||||||||
7414276-TCAAAAAA-T | 7546235-TCAAAAAA-T | ** | |||||||
17193266-C-T | 15081386-C-T | ** | |||||||
10770709-G-T | ** | ||||||||
8974114-G-T | 9136505-G-T | ** | |||||||
7269647-A-T | 7401606-A-T | ** | |||||||
10880576-C-A | ** | ||||||||
10994125-C-G | ** | ||||||||
28558920-C-A | 26412773-C-A | ** | |||||||
4389598-T-TA | 4521557-T-TA | ** | |||||||
4497864-A-C | 4629823-A-C | ** | |||||||
4497882-T-C | 4629841-T-C | ** | |||||||
8761581-A-C | 8893540-A-C | ** | |||||||
8556323-T-C | 8688282-T-C | ** | |||||||
8660352-C-T | 8792311-C-T | ** | |||||||
8660370-G-C | 8792329-G-C | ** | |||||||
8690349-A-T | 8822308-A-T | ** | |||||||
8713132-C-A | 8845091-C-A | ** | |||||||
8731034-T-G | 8862993-T-G | ** | |||||||
8736465-T-C | 8868424-T-C | ** | |||||||
8760541-A-G | 8892500-A-G | ** | |||||||
27216613-C-T | 25070466-C-T | P1_g3 | ** | ||||||
8766358-T-C | 8898317-T-C | ** | |||||||
8403271-GCAA-G | 8535230-GCAA-G | ** | |||||||
8854096-A-C | 8986055-A-C | ** | |||||||
8856807-C-A | 8988766-C-A | ** | |||||||
9056465-C-A | ** | ||||||||
9111305-G-T | FT109127 | ** | |||||||
9111355-G-T | ** | ||||||||
9034421-C-A | 9196812-C-A | ** | |||||||
9076136-G-C | 9238527-G-C | ** | |||||||
9088872-C-A | 9251263-C-A | ** | |||||||
9094431-C-A | 9256822-C-A | ** | |||||||
8501688-G-T | 8633647-G-T | ** | |||||||
8291005-G-A | 8422964-G-A | ** | |||||||
9184165-G-C | 9346556-G-C | ** | |||||||
7629993-T-A | 7761952-T-A | ** | |||||||
7414269-C-G | 7546228-C-G | ** | |||||||
7416758-C-A | 7548717-C-A | ** | |||||||
7418047-T-C | 7550006-T-C | ** | |||||||
7430575-T-G | 7562534-T-G | ** | |||||||
7441380-A-C | 7573339-A-C | ** | |||||||
7452669-A-G | 7584628-A-G | IR1_L | ** | ||||||
7469824-A-T | 7601783-A-T | IR1_L | ** | ||||||
7572827-T-C | 7704786-T-C | ** | |||||||
7590948-C-A | 7722907-C-A | ** | |||||||
7664289-C-A | 7796248-C-A | ** | |||||||
8270021-G-T | 8401980-G-T | ZQ308 | ** | ||||||
7664767-C-A | 7796726-C-A | ** | |||||||
7704718-C-A | 7836677-C-A | ** | |||||||
7708937-C-G | 7840896-C-G | ** | |||||||
27484277-T-A | 25338130-T-A | P1_Y2 | ** | ||||||
7868095-C-T | 8000054-C-T | ** | |||||||
7990838-A-C | 8122797-A-C | ** | |||||||
8110853-T-G | 8242812-T-G | ** | |||||||
8130667-C-A | 8262626-C-A | ** | |||||||
8153944-C-A | 8285903-C-A | ** | |||||||
9181056-C-A | 9343447-C-A | ** | |||||||
9424528-C-A | 9586919-C-A | ** | |||||||
7378581-C-T | 7510540-C-T | ** | |||||||
10760014-C-A | ** | ||||||||
10677853-G-T | ** | ||||||||
10689852-C-A | ** | ||||||||
10747844-C-A | ** | ||||||||
10752616-C-A | ** | ||||||||
10754662-A-C | ** | ||||||||
10756011-C-A | ** | ||||||||
10759974-C-A | ** | ||||||||
10759981-A-C | ** | ||||||||
10759990-C-A | ** | ||||||||
10769817-C-T | ** | ||||||||
10661938-C-A | ** | ||||||||
10770721-T-A | ** | ||||||||
10772539-T-C | ** | ||||||||
10775408-T-G | ** | ||||||||
26379278-C-A | 24233131-C-A | P1_Y1 | ** | ||||||
10786025-T-C | ** | ||||||||
10786030-T-C | ** | ||||||||
26355446-C-A | 24209299-C-A | P1_Y1 | ** | ||||||
26318187-T-TG | 24172040-T-TG | P1_Y1 | ** | ||||||
25964918-T-G | 23818771-T-G | P1_Y1 | ** | ||||||
26391580-G-A | 24245433-G-A | P1_Y1 | ** | ||||||
10660059-A-C | ** | ||||||||
9442212-C-G | 9604603-C-G | ** | |||||||
9820541-G-T | 9982932-G-T | ** | |||||||
9474083-C-G | 9636474-C-G | ** | |||||||
9508437-G-T | 9670828-G-T | ** | |||||||
9515050-T-G | 9677441-T-G | ** | |||||||
9524375-G-T | 9686766-G-T | ** | |||||||
9524381-G-A | 9686772-G-A | ** | |||||||
9605880-A-C | 9768271-A-C | IR3_Prx | ** | ||||||
9605885-A-T | 9768276-A-T | IR3_Prx | ** | ||||||
9605897-T-C | 9768288-T-C | IR3_Prx | ** | ||||||
9732924-A-T | 9895315-A-T | IR3_Prx | ** | ||||||
9822827-T-G | 9985218-T-G | ** | |||||||
10658818-G-T | ** | ||||||||
9899680-G-T | 10062071-G-T | ** | |||||||
9925294-C-G | 10087685-C-G | ** | |||||||
9938363-T-C | 10100754-T-C | ** | |||||||
9963351-G-T | 10125742-G-T | ** | |||||||
9980550-C-A | 10142941-C-A | ** | |||||||
9993364-C-A | 10155755-C-A | ** | |||||||
10013817-G-A | 10176208-G-A | ** | |||||||
10018189-G-C | 10180580-G-C | ** | |||||||
10651670-C-G | ** | ||||||||
10653322-C-A | ** | ||||||||
7397458-C-A | 7529417-C-A | ** | |||||||
7362421-C-A | 7494380-C-A | ** | |||||||
22644842-C-A | 20482956-C-A | ** | |||||||
5650758-G-C | 5782717-G-C | ** | |||||||
5292308-A-G | 5424267-A-G | ** | |||||||
5409981-C-A | 5541940-C-A | ** | |||||||
5420551-G-T | 5552510-G-T | ** | |||||||
5421216-C-A | 5553175-C-A | ** | |||||||
5446494-T-C | 5578453-T-C | ** | |||||||
5524235-C-A | 5656194-C-A | ** | |||||||
5524253-G-T | 5656212-G-T | ** | |||||||
5537858-A-T | 5669817-A-T | ** | |||||||
5669157-T-A | 5801116-T-A | ** | |||||||
5258295-C-T | 5390254-C-T | ** | |||||||
5701706-A-C | 5833665-A-C | ** | |||||||
5701727-A-G | 5833686-A-G | ** | |||||||
5701926-C-A | 5833885-C-A | ** | |||||||
5755216-TTCCTATTTCTC-T | 5887175-TTCCTATTTCTC-T | ** | |||||||
5817916-T-G | 5949875-T-G | ** | |||||||
5832690-G-T | 5964649-G-T | ** | |||||||
5832795-A-C | 5964754-A-C | ** | |||||||
5845927-T-C | 5977886-T-C | ** | |||||||
5851994-C-A | 5983953-C-A | ** | |||||||
5274848-A-C | 5406807-A-C | ** | |||||||
5258169-C-A | 5390128-C-A | ** | |||||||
5865461-G-C | 5997420-G-C | ** | |||||||
4920495-G-T | 5052454-G-T | ** | |||||||
4533372-T-G | 4665331-T-G | ** | |||||||
4533478-A-T | 4665437-A-T | ** | |||||||
4580684-C-G | 4712643-C-G | ** | |||||||
4703146-T-A | 4835105-T-A | ** | |||||||
4788719-T-C | 4920678-T-C | ** | |||||||
4840739-C-A | 4972698-C-A | ** | |||||||
4861882-A-C | 4993841-A-C | FT95515 | ** | ||||||
4902065-C-A | 5034024-C-A | ** | |||||||
4920194-C-T | 5052153-C-T | ** | |||||||
4926272-T-A | 5058231-T-A | ** | |||||||
5243511-T-G | 5375470-T-G | ** | |||||||
4946094-G-T | 5078053-G-T | ** | |||||||
4983658-C-A | 5115617-C-A | ** | |||||||
5000478-C-G | 5132437-C-G | ** | |||||||
5021976-A-G | 5153935-A-G | ** | |||||||
5073782-T-C | 5205741-T-C | ** | |||||||
5077299-G-T | 5209258-G-T | ** | |||||||
5095185-G-T | 5227144-G-T | ** | |||||||
5125620-C-T | 5257579-C-T | ** | |||||||
5200875-A-T | 5332834-A-T | ** | |||||||
7318657-A-G | 7450616-A-G | ** | |||||||
5864778-C-G | 5996737-C-G | FT66819 | ** | ||||||
5888217-T-C | 6020176-T-C | ** | |||||||
7139257-G-C | 7271216-G-C | ** | |||||||
7029609-T-A | 7161568-T-A | ** | |||||||
5894966-A-G | 6026925-A-G | ** | |||||||
7042667-C-A | 7174626-C-A | ** | |||||||
7076189-T-A | 7208148-T-A | ** | |||||||
7092379-C-A | 7224338-C-A | ** | |||||||
7099087-C-A | 7231046-C-A | ** | |||||||
7099095-C-T | 7231054-C-T | ** | |||||||
7253767-G-T | 7385726-G-T | ** | |||||||
7150656-C-A | 7282615-C-A | ** | |||||||
7000538-A-T | 7132497-A-T | ** | |||||||
7239533-A-C | 7371492-A-C | ** | |||||||
7150697-A-G | 7282656-A-G | ** | |||||||
7156755-C-A | 7288714-C-A | ** | |||||||
7167656-CT-C | 7299615-CT-C | ** | |||||||
7182943-C-A | 7314902-C-A | ** | |||||||
7186657-C-T | 7318616-C-T | ** | |||||||
7221548-C-A | 7353507-C-A | ** | |||||||
7223551-C-T | 7355510-C-T | ** | |||||||
7020606-C-A | 7152565-C-A | ** | |||||||
6998989-T-G | 7130948-T-G | ** | |||||||
7236542-G-C | 7368501-G-C | ** | |||||||
6774074-A-G | 6906033-A-G | ** | |||||||
6044603-C-T | 6176562-C-T | Y25875 | ** | ||||||
7309987-A-G | 7441946-A-G | ** | |||||||
6150099-T-C | 6282058-T-C | IR3_Dst | ** | ||||||
6210905-A-AT | 6342864-A-AT | IR3_Dst | ** | ||||||
27647560-T-G | 25501413-T-G | P1_Y2 | ** | ||||||
6519622-T-A | 6651581-T-A | ** | |||||||
6616748-A-T | 6748707-A-T | ** | |||||||
6619720-C-A | 6751679-C-A | ** | |||||||
6808119-T-G | 6940078-T-G | ** | |||||||
6930809-T-G | 7062768-T-G | ** | |||||||
6818970-T-C | 6950929-T-C | ** | |||||||
6827031-C-A | 6958990-C-A | ** | |||||||
7275032-G-C | 7406991-G-C | ** | |||||||
7274949-T-C | 7406908-T-C | ** | |||||||
27636274-G-T | 25490127-G-T | P1_Y2 | ** | ||||||
27535259-C-A | 25389112-C-A | P1_Y2 | ** | ||||||
6929639-C-A | 7061598-C-A | ** | |||||||
7259010-C-A | 7390969-C-A | ** | |||||||
7225743-CAA-C | 7357702-CAA-C | 11×A | ** | ||||||
23391524-A-G | 21229638-A-G | *** | |||||||
23391530-T-G | 21229644-T-G | *** | |||||||
22747679-A-T | 20585793-A-T | 10×T | *** | ||||||
23126803-C-A | 20964917-C-A | *** | |||||||
23391522-C-A | 21229636-C-A | *** | |||||||
22886398-C-A | 20724512-C-A | *** | |||||||
23391523-A-G | 21229637-A-G | *** | |||||||
27676369-C-A | 25530222-C-A | P1_Y2 | *** | ||||||
25241051-A-C | 23094904-A-C | FGC54660 | P2_r1 | *** | |||||
22598295-T-A | 20436409-T-A | *** | |||||||
10789341-A-T | *** | ||||||||
14701718-C-A | 12589784-C-A | *** | |||||||
15385860-CAA-C,CA | 13273980-CAA-C,CA | 14×A | *** | ||||||
17755376-C-A | 15643496-C-A | *** | |||||||
56835128-C-T | *** | ||||||||
14286816-G-A | 12166110-G-A | *** | |||||||
10789329-C-A | *** | ||||||||
6765577-C-A | 6897536-C-A | *** | |||||||
10918212-G-T | *** | ||||||||
2741123-G-T | 2873082-G-T | *** | |||||||
2909292-C-A | 3041251-C-A | *** | |||||||
4065731-C-A | 4197690-C-A | *** | |||||||
4527582-T-C | 4659541-T-C | *** | |||||||
6434909-C-A | 6566868-C-A | *** | |||||||
6922480-C-A | 7054439-C-A | *** | |||||||
6922809-T-C | 7054768-T-C | *** | |||||||
10744523-CCACTG-C | *** | ||||||||
10763141-C-A | *** | ||||||||
8760644-G-C | 8892603-G-C | *** | |||||||
15498231-C-T | 13386351-C-T | Y129778 | *** | ||||||
22278583-T-C | 20116697-T-C | DYZ19 | *** | ||||||
13143784-GCACTGCACAT-CCACTG,G | 10633270-GCACTGCACAT-CCACTG,G | *** | |||||||
23391529-C-T | 21229643-C-T | Y21680 | *** | ||||||
13854347-C-A | 11733641-C-A | *** | |||||||
10009220-T-C | 10171611-T-C | BY82833 | *** | ||||||
22283018-G-T | 20121132-G-T | DYZ19 | *** | ||||||
21617776-CAAAAA-C | 19455890-CAAAAA-C | 15×A | *** | ||||||
22221777-G-C | 20059891-G-C | DYZ19 | *** | ||||||
10849637-A-C,T | *** | ||||||||
22244361-G-T | 20082475-G-T | DYZ19 | *** | ||||||
22283017-T-C | 20121131-T-C | DYZ19 | *** | ||||||
22339619-C-A | 20177733-C-A | DYZ19 | *** | ||||||
24962197-G-C | 22816050-G-C | g1 | *** | ||||||
26361483-C-T | 24215336-C-T | P1_Y1 | *** | ||||||
15495457-T-A | 13383577-T-A | *** | |||||||
21362558-G-A | 19200672-G-A | *** | |||||||
7783300-C-A | 7915259-C-A | *** | |||||||
10673942-G-C,T | *** | ||||||||
22122879-A-G | 19960993-A-G | *** | |||||||
16908439-C-G | 14796559-C-G | *** | |||||||
14589995-G-T | 12478195-G-T | *** | |||||||
14875626-A-G | 12763696-A-G | *** | |||||||
14893960-C-A | 12782026-C-A | *** | |||||||
15029512-G-T | 12917600-G-T | *** | |||||||
15124009-C-A | 13012096-C-A | *** | |||||||
15882455-C-T | 13770575-C-T | *** | |||||||
16908450-C-A | 14796570-C-A | *** | |||||||
14109316-CTT-C,CTTT | 11988610-CTT-C,CTTT | 14×T | *** | ||||||
17882952-GCTGCTACTTCAGTGAGCACAACGATT-G | 15771072-GCTGCTACTTCAGTGAGCACAACGATT-G | *** | |||||||
17907736-A-G | 15795856-A-G | *** | |||||||
18612759-GTATATATATA-G | 16500879-GTATATATATA-G | 15×TA | *** | ||||||
19299066-C-A | 17187186-C-A | *** | |||||||
21468743-G-A | 19306857-G-A | *** | |||||||
21773884-A-T | 19611998-A-T | *** | |||||||
21923325-A-C | 19761439-A-C | *** | |||||||
14316186-CTTT-C,CTTTT | 12195480-CTTT-C,CTTTT | 14×T | *** | ||||||
11673054-G-T | *** | ||||||||
10785504-C-A | *** | ||||||||
10796685-T-A | *** | ||||||||
10789351-A-T | *** | ||||||||
10789368-T-G | *** | ||||||||
10789381-A-G | *** | ||||||||
10789390-C-T | *** | ||||||||
10789401-A-AGTTAT,T | *** | ||||||||
10794259-CAATCCACTCT-C,CACTCCACTCC | *** | ||||||||
10796658-A-G | *** | ||||||||
10796691-C-G | *** | ||||||||
13526278-T-A | 11370602-T-A | *** | |||||||
10860913-T-C | *** | ||||||||
10860928-T-C | *** | ||||||||
13140475-T-C | 10629961-T-C | *** | |||||||
13196130-C-A | 11040454-C-A | *** | |||||||
13226810-G-A | 11071134-G-A | *** | |||||||
13472121-A-T | 11316445-A-T | *** | |||||||
13472137-G-C | 11316461-G-C | *** | |||||||
31648-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 297270 | 10688413 | 7738119 | 7819015 |
Kit: 297270 | 9641830 | 7868012 | 7770258 |
Used in age calculations | 10688413 | 7868012 | 7819015 |
Counts of SNPs | 4 | 3 |
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