Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > S756 > Z16328 > BY23078 > BY23079

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
454668
BigY2
454668
26312084-G-C 24165937-G-C P1_Y1 ***A*
3544789-G-A 3676748-G-A A*
6178674-C-T 6310633-C-T IR3_Dst ***A*
6402148-C-T 6534107-C-T ****
13469000-A-G 11313324-A-G **
16298415-T-C 14186535-T-C **
15985712-C-G 13873832-C-G **
15988106-A-T 13876226-A-T **
15988207-A-G 13876327-A-G **
16001288-G-T 13889408-G-T **
16028438-T-A 13916558-T-A **
16028505-A-T 13916625-A-T **
16047162-G-T 13935282-G-T **
16071152-G-C 13959272-G-C **
16290834-G-T 14178954-G-T **
16295072-C-A 14183192-C-A **
16481149-A-T 14369269-A-T **
16355184-G-T 14243304-G-T **
15927876-T-G 13815996-T-G **
16481158-T-G 14369278-T-G **
16492581-G-T 14380701-G-T **
16560025-G-A 14448145-G-A **
16577626-C-A 14465746-C-A **
16603280-T-G 14491400-T-G **
16679504-C-A 14567624-C-A **
16679517-C-G 14567637-C-G **
16700248-G-A 14588368-G-A **
16705512-A-T 14593632-A-T **
16710431-G-A 14598551-G-A **
15940297-A-C 13828417-A-C **
15866230-C-A 13754350-C-A **
15904055-C-A 13792175-C-A **
15606567-A-G 13494687-A-G **
15286019-G-T 13174118-G-T **
15315425-G-T 13203530-G-T **
15323488-C-A 13211606-C-A **
15324118-T-C 13212236-T-C **
15342607-C-A 13230726-C-A **
15342626-C-A 13230745-C-A **
15347011-A-C 13235130-A-C **
15365091-A-G 13253211-A-G **
15370813-C-A 13258933-C-A **
15477904-G-T 13366024-G-T **
15542645-T-A 13430765-T-A **
15650596-C-A 13538716-C-A **
15870460-T-G 13758580-T-G **
15680118-A-G 13568238-A-G **
15753196-T-C 13641316-T-C **
15769488-C-A 13657608-C-A **
15774109-T-A 13662229-T-A **
15774127-TA-T 13662247-TA-T **
15774145-A-G 13662265-A-G **
15788033-C-A 13676153-C-A **
15803535-G-C 13691655-G-C **
15852793-T-A 13740913-T-A **
15852870-G-T 13740990-G-T **
16842085-T-C 14730205-T-C **
16786085-C-A 14674205-C-A **
16896239-T-G 14784359-T-G **
16860749-C-G 14748869-C-G 24×A**
18012144-T-G 15900264-T-G P7_Dst **
17713897-A-G 15602017-A-G **
17756724-A-G 15644844-A-G **
17914477-T-A 15802597-T-A **
17928628-C-A 15816748-C-A **
17953780-T-C 15841900-T-C **
17953817-T-A 15841937-T-A **
17953826-T-C 15841946-T-C **
17991079-TA-T 15879199-TA-T P7_Prx **
17991128-A-T 15879248-A-T P7_Prx **
17991177-G-A 15879297-G-A P7_Prx **
18080492-C-G 15968612-C-G **
17671639-T-A 15559759-T-A **
18099018-T-C 15987138-T-C **
18189956-T-C 16078076-T-C **
18223977-T-G 16112097-T-G **
18256198-C-A 16144318-C-A **
18354128-G-A 16242248-G-A P6_Prx **
18369825-A-T 16257945-A-T P6_Prx **
18412229-C-T 16300349-C-T P6_Gap **
18443489-G-C 16331609-G-C P6_Dst **
18447552-C-T 16335672-C-T P6_Dst **
18447623-T-A 16335743-T-A P6_Dst **
18520493-T-A 16408613-T-A P6_Dst **
17676429-C-A 15564549-C-A **
17576086-A-C 15464206-A-C **
16865288-G-T 14753408-G-T **
17225848-C-A 15113968-C-A **
15285844-T-A 13173943-T-A **
16896305-C-T 14784425-C-T **
16897602-C-A 14785722-C-A **
16926027-G-T 14814147-G-T **
16932720-A-C 14820840-A-C **
16936082-G-A 14824202-G-A BZ3690 **
17023486-C-A 14911606-C-A **
17095248-A-G 14983368-A-G **
17103824-C-A 14991944-C-A **
17155812-C-A 15043932-C-A **
17206578-C-A 15094698-C-A **
17243832-G-T 15131952-G-T **
17535639-T-A 15423759-T-A **
17362824-C-A 15250944-C-A **
17371258-C-A 15259378-C-A **
17374562-G-A 15262682-G-A **
17374601-A-C 15262721-A-C **
17376546-C-A 15264666-C-A **
17402351-A-T 15290471-A-T **
17426368-C-T 15314488-C-T **
17432754-C-T 15320874-C-T **
17503374-C-A 15391494-C-A Y99343 **
17505023-C-A 15393143-C-A **
17535550-C-T 15423670-C-T **
15285848-G-T 13173947-G-T **
15220919-C-G 13109005-C-G **
15259230-T-C 13147314-T-C **
14053506-G-A 11932800-G-A **
13961728-C-A 11841022-C-A **
13975816-A-C 11855110-A-C **
13976441-C-T 11855735-C-T **
13976457-C-G 11855751-C-G **
13976461-G-T 11855755-G-T **
14009554-C-A 11888848-C-A **
14035102-A-G 11914396-A-G **
14036089-G-T 11915383-G-T **
14042604-C-G 11921898-C-G **
14050627-C-A 11929921-C-A **
14065510-C-T 11944804-C-T **
13942434-T-C 11821728-T-C **
14069214-A-T 11948508-A-T **
14080102-T-C 11959396-T-C **
14100400-C-A 11979694-C-A **
14103228-T-C 11982522-T-C **
14146746-C-A 12026040-C-A **
14146789-T-G 12026083-T-G **
14152245-G-T 12031539-G-T **
14184373-C-A 12063667-C-A **
14191896-T-G 12071190-T-G **
14224168-G-C 12103462-G-C **
14286952-G-T 12166246-G-T **
13943077-G-A 11822371-G-A **
13928237-C-A 11807531-C-A **
14310376-G-T 12189670-G-T **
11653023-C-A **
13571571-C-G 11415895-C-G **
13571610-C-G 11415934-C-G **
13571611-A-T 11415935-A-T **
13572342-T-G 11416666-T-G **
13588340-G-C 11432664-G-C **
28692496-G-A 26546349-G-A **
13625345-C-A 11469669-C-A **
13643011-A-T 11487335-A-T **
13698505-A-C 11542829-A-C **
13716682-G-C 11561006-G-C **
11647777-A-C **
11658188-G-A **
13908310-A-T 11787604-A-T **
11665154-G-A **
11665635-G-A **
11665904-C-T **
13829221-A-G 11708515-A-G **
13857180-T-G 11736474-T-G **
13859248-T-C 11738542-T-C **
13866059-G-A 11745353-G-A **
13874743-G-C 11754037-G-C **
13884330-A-G 11763624-A-G **
13893396-T-C 11772690-T-C **
13899204-T-G 11778498-T-G **
14296793-G-C 12176087-G-C **
14314094-T-C 12193388-T-C **
15259225-A-G 13147309-A-G **
15113502-C-A 13001589-C-A **
14815888-T-A 12703959-T-A **
14848893-A-C 12736959-A-C **
14880311-T-A 12768381-T-A **
14909231-G-T 12797298-G-T **
14911980-T-G 12800047-T-G **
15044333-C-A 12932423-C-A **
15073081-A-G 12961171-A-G **
15081335-G-A 12969425-G-A **
15092337-A-G 12980426-A-G **
15106900-A-T 12994987-A-T **
15126212-G-T 13014299-G-T **
14788118-C-A 12676189-C-A **
15126284-C-T 13014371-C-T **
15157459-T-G 13045546-T-G **
15157567-C-A 13045654-C-A **
15185398-C-T 13073484-C-T **
15205995-A-G 13094081-A-G **
15218953-T-A 13107039-T-A **
15219007-G-T 13107093-G-T **
15219020-A-C 13107106-A-C **
15220911-T-C 13108997-T-C **
15220917-T-C 13109003-T-C **
18748671-C-T 16636791-C-T **
14815843-T-C 12703914-T-C **
14742029-G-C 12630097-G-C **
14349375-C-A 12228670-C-A **
14515213-A-G 12403418-A-G **
14363422-C-T 12242717-C-T **
14369138-G-C 12248434-G-C **
14369172-A-T 12248468-A-T **
14369174-G-T 12248470-G-T **
14379076-C-A 12258372-C-A **
14381317-C-G 12260613-C-G **
14381337-G-T 12260633-G-T **
14430428-A-C 12309701-A-C **
14470294-C-A 12349563-C-A **
14473646-C-T 12352915-C-T **
14506063-T-C 12394268-T-C **
14526765-T-A 12414966-T-A **
14723870-A-C 12611938-A-C **
14555141-T-A 12443342-T-A **
14555160-C-G 12443361-C-G **
14559116-G-A 12447317-G-A **
14563983-G-A 12452183-G-A **
14602673-T-A 12490875-T-A **
14620203-G-T 12508401-G-T **
14656150-T-C 12544215-T-C **
14682740-GA-G 12570806-GA-G 8×A**
14688807-C-A 12576873-C-A **
14700865-T-A 12588931-T-A **
14700898-A-G 12588964-A-G **
18711508-GTAATT-G 16599628-GTAATT-G **
18756015-C-A 16644135-C-A **
18748691-T-G 16636811-T-G **
25027419-A-T 22881272-A-T g1 **
24296185-T-G 22150038-T-G P3_t1 **
24296293-A-T 22150146-A-T P3_t1 **
24300830-T-TA 22154683-T-TA P3_t1 **
24331279-G-T 22185132-G-T P3_t1 **
24404383-A-C 22258236-A-C **
24406505-C-A 22260358-C-A **
24435574-C-A 22289427-C-A **
24513745-A-G 22367598-A-G **
24600449-T-C 22454302-T-C P3_t2 **
24877214-C-T 22731067-C-T g1 **
25601395-T-C 23455248-T-C P1_gr1 **
24108325-G-A 21962178-G-A P3_b1 **
25601454-A-AG 23455307-A-AG P1_gr1 **
25850850-G-T 23704703-G-T P1_Y1 **
25964879-C-A 23818732-C-A P1_Y1 **
25964891-C-G 23818744-C-G P1_Y1 **
25964897-T-TATTC 23818750-T-TATTC P1_Y1 **
25980634-A-AG 23834487-A-AG P1_Y1 **
25984352-A-C 23838205-A-C P1_Y1 **
25984357-G-A 23838210-G-A P1_Y1 **
25984371-T-G 23838224-T-G P1_Y1 **
25984376-T-G 23838229-T-G P1_Y1 **
25984377-C-G 23838230-C-G P1_Y1 **
24254143-G-GAT 22107996-G-GAT P3_b1 10×AC**
24108307-T-G 21962160-T-G P3_b1 **
25984400-T-G 23838253-T-G P1_Y1 **
23468561-T-A 21306675-T-A **
23188658-T-G 21026772-T-G **
23272448-A-T 21110562-A-T **
23276640-T-C 21114754-T-C **
23291338-C-G 21129452-C-G **
23355389-T-A 21193503-T-A YP3713 A2975 **
23355398-T-G 21193512-T-G **
23395723-T-C 21233837-T-C **
23440665-G-T 21278779-G-T **
23447546-A-T 21285660-A-T **
23468548-T-A 21306662-T-A **
23468559-T-A 21306673-T-A **
23475650-C-A 21313764-C-A **
23898947-T-TA 21737061-T-TA **
23522196-T-G 21360310-T-G **
23522206-T-G 21360320-T-G **
23623474-T-G 21461588-T-G **
23633456-C-T 21471570-C-T **
23655466-G-C 21493580-G-C **
23655468-A-T 21493582-A-T **
23655470-G-T 21493584-G-T **
23773569-G-T 21611683-G-T **
23825090-G-TTT 21663204-G-TTT **
23825094-C-T 21663208-C-T **
23825287-G-T 21663401-G-T **
25984395-A-G 23838248-A-G P1_Y1 **
25984407-G-T 23838260-G-T P1_Y1 **
23181468-A-G 21019582-A-G **
28782917-C-T 26636770-C-T **
28535776-A-G 26389629-A-G **
28575124-G-C 26428977-G-C **
28593218-G-C 26447071-G-C **
28612222-G-T 26466075-G-T **
28623303-T-A 26477156-T-A **
28643833-G-A 26497686-G-A **
28669726-C-A 26523579-C-A **
28692493-C-A 26546346-C-A **
28732036-C-G 26585889-C-G **
28756959-A-G 26610812-A-G **
28788068-G-A 26641921-G-A **
28513963-T-C 26367816-T-C **
28801469-A-G 26655322-A-G **
28808573-T-A 26662426-T-A **
56709195-G-T **
56709196-A-C **
56709265-G-C **
56827678-C-A **
56830361-TCTGC-T **
56830366-TC-T **
56830380-C-A **
56837256-C-A **
56845731-A-G **
28532734-C-T 26386587-C-T **
28513896-T-G 26367749-T-G **
26133717-T-G 23987570-T-G P1_Y1 **
27584523-G-T 25438376-G-T P1_Y2 **
26133721-T-G 23987574-T-G P1_Y1 **
26133725-T-G 23987578-T-G P1_Y1 **
26133742-G-T 23987595-G-T P1_Y1 **
26133748-T-G 23987601-T-G P1_Y1 **
26133765-G-A 23987618-G-A P1_Y1 **
26170369-G-T 24024222-G-T P1_Y1 **
26170652-T-G 24024505-T-G P1_Y1 **
26248333-A-G 24102186-A-G P1_Y1 **
26908776-C-A 24762629-C-A P1_r3 **
27499338-A-C 25353191-A-C P1_Y2 **
27567859-A-TC 25421712-A-TC P1_Y2 **
27595829-G-T 25449682-G-T P1_Y2 **
28513885-G-A 26367738-G-A **
27596052-G-C 25449905-G-C P1_Y2 **
27637074-T-C 25490927-T-C P1_Y2 **
27644018-C-A 25497871-C-A P1_Y2 **
27756332-C-A 25610185-C-A P1_Y2 **
27896033-A-AC 25749886-A-AC P1_Y2 **
27902156-G-T 25756009-G-T P1_Y2 **
27902234-G-T 25756087-G-T P1_Y2 **
28441891-C-A 26295744-C-A P1_gr2 **
28480272-A-C 26334125-A-C **
28480279-A-T 26334132-A-T **
28505212-C-T 26359065-C-T **
23186084-A-C 21024198-A-C **
23181442-T-A 21019556-T-A **
18753557-A-C 16641677-A-C **
20012744-A-AGC 17900864-A-AGC P5_Prx **
19604847-A-G 17492967-A-G P5_Prx **
19605011-G-C 17493131-G-C P5_Prx **
19688698-T-G 17576818-T-G P5_Prx **
19688717-A-G 17576837-A-G P5_Prx **
19739344-A-AACC 17627464-A-AACC P5_Prx **
19867095-G-A 17755215-G-A P5_Prx **
19867136-G-T 17755256-G-T P5_Prx **
19882664-C-A 17770784-C-A P5_Prx **
19966838-C-A 17854958-C-A P5_Prx **
19966841-T-G 17854961-T-G P5_Prx **
20101642-G-A 17989762-G-A P5_Dst **
19563164-T-C 17451284-T-C **
20125587-A-G 18013707-A-G P5_Dst **
20350311-C-A 18188425-C-A P5_Dst 12×A**
20613620-T-G 18451734-T-G P4_Prx **
20632062-T-C 18470176-T-C P4_Prx **
20659323-C-A 18497437-C-A P4_Prx **
20667078-T-TG 18505192-T-TG P4_Prx **
20755609-T-G 18593723-T-G P4_Prx **
20755691-T-A 18593805-T-A P4_Prx **
20803078-T-C 18641192-T-C P4_Gap **
20869232-T-TGA 18707346-T-TGA P4_Dst **
20920833-A-G 18758947-A-G P4_Dst **
19591410-T-TC 17479530-T-TC P5_Prx **
19546145-C-A 17434265-C-A **
21095718-A-C 18933832-A-C **
19047993-T-G 16936113-T-G **
13565681-C-A 11410005-C-A **
18780265-G-T 16668385-G-T **
18891070-A-T 16779190-A-T **
18926909-A-T 16815029-A-T **
18932756-T-G 16820876-T-G **
18933724-A-G 16821844-A-G **
18933774-A-G 16821894-A-G **
18933792-A-C 16821912-A-C **
18965884-C-A 16854004-C-A **
18990303-C-A 16878423-C-A **
19015028-A-T 16903148-A-T **
19061269-C-A 16949389-C-A **
19537969-G-T 17426089-G-T **
19071775-C-A 16959895-C-A **
19107427-T-G 16995547-T-G **
19135264-T-A 17023384-T-A **
19203961-A-G 17092081-A-G **
19204450-T-C 17092570-T-C **
19246688-A-C 17134808-A-C **
19303625-G-T 17191745-G-T **
19327314-C-A 17215434-C-A **
19370124-C-A 17258244-C-A **
19524486-T-A 17412606-T-A **
19537963-G-A 17426083-G-A **
21012109-A-G 18850223-A-G P4_Dst **
21127550-A-G 18965664-A-G **
23019911-A-C 20858025-A-C **
22797551-G-T 20635665-G-T **
22245659-T-A 20083773-T-A DYZ19 **
22309885-C-A 20147999-C-A DYZ19 **
22448820-G-A 20286934-G-A DYZ19 **
22529507-G-A 20367621-G-A **
22537267-T-A 20375381-T-A **
22564735-G-A 20402849-G-A **
22587018-C-A 20425132-C-A **
22732913-A-C 20571027-A-C **
22768073-C-G 20606187-C-G **
22768101-C-G 20606215-C-G **
22781797-T-A 20619911-T-A **
22797632-A-C 20635746-A-C **
22177472-T-C 20015586-T-C **
22810954-C-A 20649068-C-A **
22811881-T-C 20649995-T-C **
22811889-G-A 20650003-G-A **
22827365-T-A 20665479-T-A **
22843791-G-A 20681905-G-A **
22843798-A-G 20681912-A-G **
22868786-A-T 20706900-A-T **
22868824-G-T 20706938-G-T **
22868859-T-C 20706973-T-C **
22885071-C-G 20723185-C-G **
22993532-TGC-T 20831646-TGC-T **
22203725-G-T 20041839-G-T **
22122969-A-C 19961083-A-C **
21154071-A-T 18992185-A-T **
21651674-A-G 19489788-A-G **
21212812-T-G 19050926-T-G **
21285503-G-C 19123617-G-C **
21297884-C-A 19135998-C-A **
21323568-C-A 19161682-C-A **
21362851-A-C 19200965-A-C **
21362858-A-T 19200972-A-T **
21367279-A-C 19205393-A-C **
21367317-C-T 19205431-C-T **
21367336-T-C 19205450-T-C **
21383449-T-A 19221563-T-A **
21456158-T-A 19294272-T-A **
21678136-A-C 19516250-A-C **
22122952-G-T 19961066-G-T **
21708314-G-C 19546428-G-C **
21775093-A-G 19613207-A-G **
21789995-T-G 19628109-T-G **
21858246-G-T 19696360-G-T **
21990397-A-C 19828511-A-C **
21990441-A-C 19828555-A-C **
22011987-G-C 19850101-G-C **
22055430-C-A 19893544-C-A **
22068665-G-T 19906779-G-T **
22075834-C-A 19913948-C-A **
22122231-A-T 19960345-A-T **
13571570-A-T 11415894-A-T **
13624243-A-C 11468567-A-C **
13522877-G-T 11367201-G-T **
4862468-G-C 4994427-G-C **
4700916-T-A 4832875-T-A **
4700978-C-T 4832937-C-T **
4701011-G-T 4832970-G-T **
4776650-C-T 4908609-C-T **
4776667-C-T 4908626-C-T **
4776739-G-A 4908698-G-A **
4804227-G-T 4936186-G-T **
4861957-G-T 4993916-G-T **
4862427-A-G 4994386-A-G **
4862459-T-A 4994418-T-A **
4875390-T-G 5007349-T-G **
4630565-T-C 4762524-T-C **
4943647-C-G 5075606-C-G **
5059670-C-CA 5191629-C-CA **
5059680-C-T 5191639-C-T **
5126902-C-A 5258861-C-A **
5170507-T-C 5302466-T-C **
5170514-C-T 5302473-C-T **
5186610-C-A 5318569-C-A **
5186666-A-T 5318625-A-T **
5188519-A-C 5320478-A-C **
5199521-C-T 5331480-C-T **
5199533-A-G 5331492-A-G **
4688134-C-A 4820093-C-A **
4557248-T-G 4689207-T-G **
5247298-G-C 5379257-G-C **
4357484-C-G 4489443-C-G **
3852305-T-C 3984264-T-C **
4063144-A-G 4195103-A-G **
4103747-T-A 4235706-T-A **
4129720-C-A 4261679-C-A **
4160412-C-A 4292371-C-A **
4179289-G-C 4311248-G-C **
4222644-T-A 4354603-T-A **
4229331-G-T 4361290-G-T **
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4241474-C-A 4373433-C-A **
4357495-T-G 4489454-T-G **
4557244-A-G 4689203-A-G **
4357535-A-C 4489494-A-C **
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4357576-G-C 4489535-G-C **
4374171-C-A 4506130-C-A **
4378056-C-T 4510015-C-T **
4389401-T-C 4521360-T-C **
4447668-G-C 4579627-G-C **
4449121-A-G 4581080-A-G **
4449123-A-C 4581082-A-C **
4504764-C-A 4636723-C-A **
4527413-A-G 4659372-A-G **
5200854-A-C 5332813-A-C **
5312295-C-T 5444254-C-T **
3754428-C-A 3886387-C-A **
6303639-A-T 6435598-A-T IR3_Dst 13×T**
5999483-T-A 6131442-T-A **
6084214-C-A 6216173-C-A **
6102219-C-A 6234178-C-A **
6139813-G-C 6271772-G-C IR3_Dst **
6167460-T-G 6299419-T-G IR3_Dst **
6167511-T-A 6299470-T-A IR3_Dst **
6167596-A-T 6299555-A-T IR3_Dst **
6167604-C-G 6299563-C-G IR3_Dst **
6267674-T-C 6399633-T-C IR3_Dst **
6267681-G-A 6399640-G-A IR3_Dst **
6356266-C-A 6488225-C-A **
5990317-T-G 6122276-T-G **
6363667-C-A 6495626-C-A **
13487798-G-T 11332122-G-T **
6369012-G-C 6500971-G-C **
6453919-C-A 6585878-C-A **
6682061-G-A 6814020-G-A **
6682075-C-T 6814034-C-T **
6682077-T-C 6814036-T-C **
6694321-G-A 6826280-G-A **
6720528-A-T 6852487-A-T **
6770773-G-T 6902732-G-T **
6770796-C-A 6902755-C-A **
5996420-C-A 6128379-C-A **
5965806-T-G 6097765-T-G **
5364891-A-G 5496850-A-G **
5785400-A-G 5917359-A-G **
5364898-T-C 5496857-T-C **
5364908-C-T 5496867-C-T **
5449563-G-T 5581522-G-T **
5577297-A-T 5709256-A-T **
5613386-G-T 5745345-G-T **
5650445-A-G 5782404-A-G **
5650597-C-A 5782556-C-A **
5709929-C-A 5841888-C-A **
5746255-C-T 5878214-C-T **
5785391-T-G 5917350-T-G **
5844407-A-T 5976366-A-T **
5965803-G-T 6097762-G-T **
5844481-A-T 5976440-A-T **
5844483-A-T 5976442-A-T **
5874228-A-C 6006187-A-C **
5904567-A-G 6036526-A-G **
5923104-A-G 6055063-A-G **
5923107-G-A 6055066-G-A **
5923109-T-C 6055068-T-C **
5923122-G-T 6055081-G-T **
5923175-T-C 6055134-T-C **
5923195-T-C 6055154-T-C **
5937372-C-A 6069331-C-A **
3759363-C-A 3891322-C-A **
3754391-C-A 3886350-C-A **
6786927-TTG-T 6918886-TTG-T **
5264353-C-A 5396312-C-A **
11668778-C-T **
4256925-C-A 4388884-C-A **
9581005-T-TC 9743396-T-TC IR3_Prx **
10992296-A-T **
17374532-C-T 15262652-C-T **
7228265-A-C 7360224-A-C **
22602124-C-A 20440238-C-A **
28465022-C-A 26318875-C-A **
16865299-A-G 14753419-A-G **
16865304-A-C 14753424-A-C **
10763153-T-TTCCATTCCACTCCACTCCAC **
7359768-A-AAT 7491727-A-AAT 10×AT**
11017514-C-A **
24509302-C-A 22363155-C-A **
5426571-C-A 5558530-C-A **
10992247-A-C **
24013841-C-A 21867694-C-A **
24296202-T-G 22150055-T-G P3_t1 **
56832988-G-T **
2683468-A-G 2815427-A-G **
13206312-C-A 11050636-C-A **
17474739-C-A 15362859-C-A **
18902916-C-A 16791036-C-A **
13212567-C-A 11056891-C-A **
13935589-C-A 11814883-C-A **
8067464-T-A 8199423-T-A **
10992241-C-A **
13976447-G-A 11855741-G-A PH763 **
15158610-AG-A 13046696-AG-A **
25556057-TG-T 23409910-TG-T P1_gr1 **
6827030-G-T 6958989-G-T ****
6858592-CTTTTTTT-C 6990551-CTTTTTTT-C 25×T**
4502801-T-G 4634760-T-G **
22446694-G-A 20284808-G-A DYZ19 *****
3385083-C-A 3517042-C-A **
6267671-T-A 6399630-T-A IR3_Dst **
17030588-CTTTTTT-C 14918708-CTTTTTT-C 16×T**
21464515-T-A 19302629-T-A **
14296993-G-C 12176287-G-C **
21285478-A-C 19123592-A-C **
18855483-C-A 16743603-C-A **
5577298-C-A 5709257-C-A **
17512579-C-A 15400699-C-A **
18695923-ATT-A 16584043-ATT-A 12×T**
9444871-C-A 9607262-C-A **
10752524-A-C **
22078156-C-A 19916270-C-A **
5562313-C-A 5694272-C-A **
15717795-C-A 13605915-C-A **
18768619-C-A 16656739-C-A **
9557585-A-AG 9719976-A-AG IR3_Prx **
2651912-G-T 2783871-G-T **
3731969-G-A 3863928-G-A **
3411704-A-AC 3543663-A-AC **
3229565-G-GTGTGTGTT 3361524-G-GTGTGTGTT **
3284189-C-G 3416148-C-G **
3332040-A-G 3463999-A-G **
3335802-A-C 3467761-A-C **
3362341-T-C 3494300-T-C **
3366495-C-A 3498454-C-A **
3367122-C-T 3499081-C-T **
3409905-C-A 3541864-C-A **
3411663-G-T 3543622-G-T **
3411664-G-A 3543623-G-A **
3411721-G-A 3543680-G-A **
3155540-G-C 3287499-G-C **
3411723-G-A 3543682-G-A **
3439998-C-A 3571957-C-A **
3544296-T-A 3676255-T-A **
3622734-T-C 3754693-T-C **
3646872-CAA-C 3778831-CAA-C 15×A**
3647005-T-A 3778964-T-A **
3647018-C-A 3778977-C-A **
3688410-C-A 3820369-C-A **
3688462-T-A 3820421-T-A **
3696489-A-G 3828448-A-G **
3696581-G-A 3828540-G-A **
3170378-C-A 3302337-C-A **
3142850-T-G 3274809-T-G **
2669832-C-A 2801791-C-A **
2858894-T-G 2990853-T-G **
2683206-C-A 2815165-C-A **
2683277-A-C 2815236-A-C **
2708227-T-G 2840186-T-G **
2708271-A-G 2840230-A-G **
2708699-C-T 2840658-C-T **
2760034-C-A 2891993-C-A **
2767770-G-A 2899729-G-A **
2806231-TA-T 2938190-TA-T **
2812829-G-T 2944788-G-T **
2817287-C-A 2949246-C-A **
2842267-G-T 2974226-G-T **
2858997-T-C 2990956-T-C **
3093826-C-A 3225785-C-A **
2866751-C-A 2998710-C-A **
2900794-C-A 3032753-C-A **
2926452-C-A 3058411-C-A **
2928217-T-G 3060176-T-G **
2975584-C-A 3107543-C-A **
3027056-G-T 3159015-G-T **
3033137-T-C 3165096-T-C **
3042286-A-AT 3174245-A-AT 10×T**
3042368-T-C 3174327-T-C **
3048134-T-A 3180093-T-A **
3093741-C-G 3225700-C-G **
6771576-A-T 6903535-A-T **
6368612-A-C 6500571-A-C **
6786939-C-T 6918898-C-T **
10667727-A-T **
10652198-A-T **
10652613-C-G **
10652999-C-A **
10660643-C-T **
10660652-C-G **
10660657-C-A **
10660708-G-T **
10661410-G-T **
10662307-A-C **
10664551-G-A **
10682604-T-C **
10034190-C-A 10196581-C-A **
10684281-C-T **
10747196-A-T **
10755477-C-T **
10755868-C-A **
10772410-G-T **
10776786-C-T **
10778646-A-G **
10778962-A-C **
10780267-T-C **
10783718-C-A **
10785255-T-C **
10041633-T-C 10204024-T-C **
10034158-T-A 10196549-T-A **
10785294-A-G **
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9417004-C-A 9579395-C-A **
9424428-C-A 9586819-C-A **
9427605-C-A 9589996-C-A **
9451349-G-A 9613740-G-A **
9474097-A-C 9636488-A-C **
9514930-C-T 9677321-C-T **
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9596571-C-T 9758962-C-T IR3_Prx 8×T**
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9828673-A-T 9991064-A-T **
10034157-G-A 10196548-G-A **
9887291-C-G 10049682-C-G **
9887509-G-T 10049900-G-T **
9934064-T-A 10096455-T-A **
9944980-C-A 10107371-C-A **
9945070-T-A 10107461-T-A **
9945090-A-T 10107481-A-T **
9960896-C-A 10123287-C-A **
9993449-T-A 10155840-T-A **
10020247-T-G 10182638-T-G **
10022048-C-G 10184439-C-G **
10034133-C-T 10196524-C-T **
10785275-T-G **
10788084-T-C **
9047099-T-C 9209490-T-C **
13282772-A-C 11127096-A-C **
11010450-A-T **
11012482-G-C **
11013159-G-T **
11015666-C-A **
11024481-C-A **
11033208-C-T **
13209381-C-T 11053705-C-T **
13213469-C-A 11057793-C-A **
13216598-C-A 11060922-C-A **
13226785-T-C 11071109-T-C **
13310768-G-T 11155092-G-T **
11008195-A-C **
13421439-C-T 11265763-C-T **
13442057-C-A 11286381-C-A **
13448791-C-CTCCAT 11293115-C-CTCCAT **
13448799-C-CACTCCACTCCAGTCT 11293123-C-CACTCCACTCCAGTCT **
13462351-C-T 11306675-C-T **
13468941-A-T 11313265-A-T **
13469016-G-C 11313340-G-C **
13469054-A-T 11313378-A-T **
13476313-A-G 11320637-A-G **
13484421-G-C 11328745-G-C **
13486709-G-A 11331033-G-A **
11008235-A-C **
10986895-T-G **
10791051-C-G **
10915440-T-C **
10821878-A-ATT **
10821880-T-TATTTAACC **
10821890-T-A **
10821898-A-ACTAGT **
10824958-T-A **
10835456-C-T **
10838581-T-C **
10886151-A-G **
10887221-C-T **
10908448-T-A **
10915456-T-C **
10986475-A-T **
10915458-C-A **
10915478-A-G **
10915494-T-A **
10915495-T-A **
10953647-C-G **
10956625-A-C **
10956628-C-A **
10956638-C-T **
10956665-A-T **
10983945-C-A **
10986450-A-G **
9048018-CAG-C 9210409-CAG-C **
9638513-T-A 9800904-T-A IR3_Prx **
9046950-G-C 9209341-G-C **
7311695-T-G 7443654-T-G **
7233084-T-A 7365043-T-A **
7241138-T-A 7373097-T-A **
7248504-C-A 7380463-C-A **
7256090-G-T 7388049-G-T **
7256108-A-C 7388067-A-C **
7256114-A-T 7388073-A-T **
7257980-G-A 7389939-G-A **
7269655-T-C 7401614-T-C **
7277581-A-T 7409540-A-T **
7302488-A-G 7434447-A-G **
7321482-T-A 7453441-T-A **
7228198-C-T 7360157-C-T **
7322962-A-C 7454921-A-C **
7360820-A-T 7492779-A-T **
7400155-G-C 7532114-G-C **
7417493-A-G 7549452-A-G **
7453559-C-A 7585518-C-A IR1_L **
7536451-A-G 7668410-A-G **
7590655-A-C 7722614-A-C **
7656737-T-G 7788696-T-G **
7699197-C-A 7831156-C-A **
7699393-T-C 7831352-T-C **
7229090-C-T 7361049-C-T **
7217300-C-A 7349259-C-A **
7764505-C-T 7896464-C-T **
7040893-G-T 7172852-G-T **
6786944-T-C 6918903-T-C **
6787002-T-G 6918961-T-G **
6798788-A-C 6930747-A-C **
6808165-T-C 6940124-T-C **
6816583-T-G 6948542-T-G **
6827857-C-A 6959816-C-A **
6934594-A-C 7066553-A-C **
6981238-T-G 7113197-T-G **
7019192-G-A 7151151-G-A **
7020605-A-T 7152564-A-T **
7082963-A-G 7214922-A-G **
7217250-G-T 7349209-G-T **
7094239-T-G 7226198-T-G **
7094252-T-G 7226211-T-G **
7094317-C-T 7226276-C-T **
7111846-A-T 7243805-A-T **
7142920-C-A 7274879-C-A **
7146805-C-A 7278764-C-A **
7146812-T-C 7278771-T-C **
7156403-G-T 7288362-G-T **
7182978-T-A 7314937-T-A **
7203665-A-C 7335624-A-C **
7217228-C-A 7349187-C-A **
7704823-TCA-T 7836782-TCA-T **
7336943-C-T 7468902-C-T **
7821368-C-T 7953327-C-T **
8842398-C-A 8974357-C-A **
8389609-C-G 8521568-C-G **
8481157-A-T 8613116-A-T **
8501626-T-C 8633585-T-C **
8556311-A-G 8688270-A-G **
7866109-T-G 7998068-T-G **
8698948-C-A 8830907-C-A **
8741633-A-C 8873592-A-C **
8774645-C-A 8906604-C-A **
8790134-A-T 8922093-A-T **
8811224-C-T 8943183-C-T **
8852147-G-T 8984106-G-T **
8276282-T-C 8408241-T-C **
8856925-C-A 8988884-C-A **
8856954-T-A 8988913-T-A **
8856957-T-G 8988916-T-G **
8867096-C-A 8999055-C-A **
9057442-T-A **
9125331-A-G **
8973150-C-A 9135541-C-A **
8974109-G-T 9136500-G-T **
8983015-C-A 9145406-C-A **
9025558-T-A 9187949-T-A **
8343967-T-C 8475926-T-C **
8674017-A-G 8805976-A-G **
8276262-G-A 8408221-G-A **
7974655-T-C 8106614-T-C **
7974695-C-A 8106654-C-A **
7994180-A-T 8126139-A-T **
7996314-A-G 8128273-A-G **
8052007-C-A 8183966-C-A **
8052520-T-A 8184479-T-A **
8095653-T-A 8227612-T-A **
7984424-C-A 8116383-C-A **
7874864-G-C 8006823-G-C **
8166673-G-A 8298632-G-A **
8276258-G-A 8408217-G-A **
7964580-C-T 8096539-C-T **
8237369-C-A 8369328-C-A **
24003096-G-T 21856949-G-T ***
13446978-C-G 11291302-C-G ***
10987843-C-T ***
13433322-G-A 11277646-G-A ***
14331176-G-T 12210470-G-T ***
22448198-C-G 20286312-C-G DYZ19 ***
6839631-G-C 6971590-G-C ***
13455131-A-G 11299455-A-G ***
22340178-G-C 20178292-G-C DYZ19 ***
56827786-TTCCATTCCATTCTAGTCCAT-T,TTCCATTCCATTCTAG ***
9934965-G-T 10097356-G-T ***
9934964-A-T 10097355-A-T ***
6444865-C-A 6576824-C-A ***
8911767-G-T 9043726-G-T ***
13298607-T-C 11142931-T-C ***
58983006-CTCTCA-C 56836859-CTCTCA-C ***
10746996-T-TCCTCA ***
24509499-G-T 22363352-G-T ***
11665474-G-A ***
11643773-G-GTTATT ***
7208631-C-A 7340590-C-A ***
19464082-G-T 17352202-G-T ***
8214851-C-T 8346810-C-T SK2336 ***
15828703-CAAA-C 13716823-CAAA-C 12×A***
10030105-C-A 10192496-C-A ***
19187441-A-G,T 17075561-A-G,T ***
14607819-G-T 12496021-G-T ***
26325336-C-A 24179189-C-A P1_Y1 ***
19187385-ATTT-A,ATT 17075505-ATTT-A,ATT 28×T***
23573795-A-G 21411909-A-G ***
21240454-G-A 19078568-G-A ***
24673226-G-A 22527079-G-A P3_b2 ***
23648121-TAGATAGTGA-T 21486235-TAGATAGTGA-T ***
22739711-C-A 20577825-C-A ***
15750502-CTTTTT-C 13638622-CTTTTT-C 18×T***
15686941-G-T 13575061-G-T ***
18263606-C-A 16151726-C-A ***
22085513-AC-A 19923627-AC-A ***
15778648-CT-C,CTT 13666768-CT-C,CTT 15×T***
11022946-C-T ***
13257539-C-A 11101863-C-A ***
7040172-T-A 7172131-T-A ***
56858369-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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