Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > ZZ39 > Z229 > Z2543 > Y22891 > BY15276

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
B93546
BigY2
B93546
20038763-C-T 17926883-C-T P5_Prx ***A*
20633075-C-T 18471189-C-T P4_Prx ***A*
6335203-T-A 6467162-T-A IR3_Dst A*
24279873-T-A 22133726-T-A P3_t1 ***A*
20692964-T-A 18531078-T-A P4_Prx A*
6331724-C-T 6463683-C-T IR3_Dst ***A*
17958303-C-G 15846423-C-G Y100776 YY++
17957964-C-T 15846084-C-T Y100775 YY++
16190942-T-G 14079062-T-G A17714 YY++
15914436-G-A 13802556-G-A A17713 YY++
14705956-T-C 12594022-T-C Y92002 YY++
14496733-A-G 12384938-A-G Y91581 YY++
28772541-C-G 26626394-C-G Y113436 ++
8998766-G-A 9161157-G-A BY77163 Y++
9055945-C-G 9218336-C-G Y88468 Y++
19357896-A-G 17246016-A-G Y104490 YY++
21391180-T-A 19229294-T-A Y106329 YY++
22087212-T-C 19925326-T-C Y108352 YY++
24882479-G-T 22736332-G-T BY226253 g1 **+
8445195-AAAAC-A 8577154-AAAAC-A 5×AAAC++
22477391-G-T 20315505-G-T BY157058 DYZ19 +
23644674-G-A 21482788-G-A Y112128 Y++
19003356-C-T 16891476-C-T A17712 YY++
28805425-A-G 26659278-A-G ****
13466811-C-A 11311135-C-A *
22224840-T-A 20062954-T-A DYZ19 ****
7474374-AAGAGAGAGAG-A 7606333-AAGAGAGAGAG-A IR1_L 21×AG****
14041047-C-A 11920341-C-A **
14021987-A-T 11901281-A-T **
14102030-G-T 11981324-G-T **
14119754-G-T 11999048-G-T **
14188102-A-G 12067396-A-G **
14198732-C-A 12078026-C-A **
14234598-G-T 12113892-G-T **
14236043-G-GA 12115337-G-GA **
14295217-A-G 12174511-A-G **
14340915-C-A 12220210-C-A **
14029376-C-G 11908670-C-G **
29960-C-A **
13836750-T-A 11716044-T-A **
13218831-A-G 11063155-A-G **
10986808-T-TCA **
10986846-C-T **
10992696-C-A **
11015124-C-T **
13202021-A-C 11046345-A-C **
13208210-T-C 11052534-T-C **
13236420-T-A 11080744-T-A **
11652384-GA-G **
13258777-A-C 11103101-A-C 11×T**
13296144-C-A 11140468-C-A **
13349660-C-A 11193984-C-A **
13454345-TCCATTG-T 11298669-TCCATTG-T **
13606364-A-G 11450688-A-G **
13652285-A-G 11496609-A-G **
13653440-A-G 11497764-A-G **
14355501-GT-G 12234796-GT-G **
14520062-A-G 12408263-A-G **
14384653-G-T 12263949-G-T **
14694794-C-A 12582860-C-A **
15446161-G-T 13334281-G-T **
15401934-C-T 13290054-C-T **
15401425-A-T 13289545-A-T **
15288980-G-T 13177079-G-T **
15197395-C-A 13085481-C-A **
15178910-C-A 13066996-C-A **
14986414-T-A 12874482-T-A **
14965452-C-T 12853527-C-T **
14914770-C-A 12802837-C-A **
14831814-G-A 12719881-G-A **
14815191-C-A 12703262-C-A **
14786617-C-A 12674687-C-A **
14767101-C-A 12655170-C-A **
14680102-G-T 12568168-G-T **
14419014-C-A 12298289-C-A **
14645024-A-C 12533093-A-C **
14621625-C-A 12509823-C-A **
14602659-G-C 12490861-G-C **
14597974-C-A 12486174-C-A **
14531510-C-A 12419711-C-A **
14521550-C-A 12409751-C-A **
10986804-A-AC **
14485945-T-C 12365214-T-C **
14485938-T-C 12365207-T-C **
14485935-T-G 12365204-T-G **
14485934-C-T 12365203-C-T **
14484484-C-A 12363753-C-A **
14452629-G-T 12331902-G-T **
14447524-G-A 12326797-G-A **
10986808-T-C **
10684183-C-T **
10964742-C-G **
7330198-CT-C 7462157-CT-C **
8167068-G-T 8299027-G-T **
8075329-C-A 8207288-C-A **
8072864-G-T 8204823-G-T **
8070019-T-C 8201978-T-C **
7964473-C-A 8096432-C-A **
7942624-C-A 8074583-C-A **
7864362-C-A 7996321-C-A **
7703996-C-A 7835955-C-A **
7632577-C-A 7764536-C-A **
7426674-C-A 7558633-C-A **
7385337-A-G 7517296-A-G **
7366345-C-A 7498304-C-A **
7331232-G-T 7463191-G-T **
7243508-G-T 7375467-G-T **
8481938-A-C 8613897-A-C **
7239655-A-G 7371614-A-G **
7236325-C-A 7368284-C-A **
7216692-C-A 7348651-C-A **
7197347-A-T 7329306-A-T **
7165366-C-T 7297325-C-T **
7164386-C-A 7296345-C-A **
7063945-C-A 7195904-C-A **
7039990-A-G 7171949-A-G **
7033321-C-A 7165280-C-A **
7000572-G-A 7132531-G-A **
6976614-G-A 7108573-G-A **
6971583-C-A 7103542-C-A **
6948509-G-A 7080468-G-A **
8376201-C-A 8508160-C-A **
8690658-GCCTTCA-G 8822617-GCCTTCA-G **
10912521-A-G **
10648797-A-C **
10844900-T-A **
10844848-T-G **
10844844-A-T **
10842681-A-C **
10825809-T-C **
10824212-C-T **
10787535-A-AACTTT **
10777880-C-A **
10694044-C-A **
10689563-C-A **
10684203-C-CCACTA **
15493229-C-A 13381349-C-A **
10657218-G-T FGC81768 **
10031799-C-A 10194190-C-A **
8746532-C-A 8878491-C-A **
10004476-G-T 10166867-G-T **
9945345-G-T 10107736-G-T **
9927264-C-A 10089655-C-A **
9865344-T-C 10027735-T-C **
9825719-C-A 9988110-C-A **
9771995-G-T 9934386-G-T **
9735454-G-T 9897845-G-T IR3_Prx **
9702969-A-AG 9865360-A-AG IR3_Prx **
9498953-ACTAAGAGAATAAAATAC-A 9661344-ACTAAGAGAATAAAATAC-A **
9460988-G-C 9623379-G-C **
9232138-T-C 9394529-T-C **
8977034-A-G 9139425-A-G **
8977026-A-C 9139417-A-C **
8810370-C-A 8942329-C-A **
15456916-T-C 13345036-T-C **
16221003-A-G 14109123-A-G **
15569627-T-C 13457747-T-C **
21369393-C-A 19207507-C-A **
22485262-A-G 20323376-A-G DYZ19 **
22449685-G-C 20287799-G-C DYZ19 **
22165115-G-T 20003229-G-T **
22013347-G-T 19851461-G-T **
21996357-T-C 19834471-T-C **
21984117-A-G 19822231-A-G **
21961659-C-A 19799773-C-A **
21954026-T-G 19792140-T-G **
21948956-A-T 19787070-A-T **
21942280-C-A 19780394-C-A **
21563091-C-A 19401205-C-A **
21422161-C-G 19260275-C-G **
21410266-G-A 19248380-G-A **
21353403-C-A 19191517-C-A **
22997905-C-A 20836019-C-A **
21296576-C-A 19134690-C-A **
21282074-C-A 19120188-C-A **
21039427-C-A 18877541-C-A **
20712331-T-A 18550445-T-A P4_Prx **
20629089-T-C 18467203-T-C P4_Prx **
20629085-T-C 18467199-T-C P4_Prx **
20629081-T-C 18467195-T-C P4_Prx **
20629070-T-C 18467184-T-C P4_Prx **
20629069-T-C 18467183-T-C P4_Prx **
20516491-T-C 18354605-T-C P5_Dst **
20470197-C-T 18308311-C-T P5_Dst **
20458459-G-T 18296573-G-T P5_Dst **
20273397-T-TA 18111511-T-TA P5_Dst **
22611244-G-T 20449358-G-T **
23044199-C-A 20882313-C-A **
20102025-T-TTA 17990145-T-TTA P5_Dst **
27714383-T-C 25568236-T-C P1_Y2 **
56872870-A-G **
56835778-A-T **
56832219-T-A **
56763515-T-A **
28783821-C-A 26637674-C-A **
28779178-C-A 26633031-C-A **
28769192-C-A 26623045-C-A **
28714855-G-C 26568708-G-C **
28632679-C-A 26486532-C-A **
28609216-G-T 26463069-G-T **
28591668-T-C 26445521-T-C **
28589585-A-G 26443438-A-G **
28462778-T-A 26316631-T-A **
26344338-A-G 24198191-A-G P1_Y1 **
23047732-A-G 20885846-A-G **
26344209-A-G 24198062-A-G P1_Y1 **
26153725-C-T 24007578-C-T P1_Y1 **
26133119-A-G 23986972-A-G P1_Y1 **
25929248-T-A 23783101-T-A P1_Y1 **
25246480-T-TTG 23100333-T-TTG P2_r1 **
24470794-C-A 22324647-C-A **
24071858-C-A 21925711-C-A P3_b1 **
23983638-G-T 21837491-G-T **
23961193-C-A 21815046-C-A **
23849705-T-A 21687819-T-A **
23775507-C-A 21613621-C-A **
23471411-TC-T 21309525-TC-T **
23380372-A-T 21218486-A-T **
23060292-C-A 20898406-C-A **
20102061-G-A 17990181-G-A P5_Dst **
19929731-A-AG 17817851-A-AG P5_Prx **
15587721-A-T 13475841-A-T **
16636904-C-A 14525024-C-A **
17584186-T-G 15472306-T-G **
17561257-C-T 15449377-C-T **
17478295-T-C 15366415-T-C **
17413227-A-T 15301347-A-T **
17201875-C-T 15089995-C-T **
17201853-C-T 15089973-C-T **
17128591-A-T 15016711-A-T **
17083136-C-A 14971256-C-A **
17013248-C-G 14901368-C-G **
16961315-A-G 14849435-A-G **
16848630-C-A 14736750-C-A **
16710520-C-A 14598640-C-A **
16701986-C-G 14590106-C-G **
16607960-C-A 14496080-C-A **
17789733-C-A 15677853-C-A **
16551157-C-A 14439277-C-A **
16362366-C-A 14250486-C-A **
16342674-A-G 14230794-A-G **
6897433-C-A 7029392-C-A **
16093128-C-A 13981248-C-A **
16054319-A-G 13942439-A-G **
16047189-A-G 13935309-A-G **
16041422-C-A 13929542-C-A **
16012968-C-A 13901088-C-A **
15988096-G-T 13876216-G-T **
15967671-C-A 13855791-C-A **
15942890-A-G 13831010-A-G **
15859478-T-G 13747598-T-G **
15746872-C-A 13634992-C-A **
17629869-C-A 15517989-C-A **
17808195-C-A 15696315-C-A **
19720734-A-T 17608854-A-T P5_Prx **
18738134-A-TT 16626254-A-TT **
19505410-T-C 17393530-T-C **
19504090-T-C 17392210-T-C **
19463724-T-C 17351844-T-C **
19233034-C-A 17121154-C-A **
18991139-C-A 16879259-C-A **
18928063-A-G 16816183-A-G **
18906464-C-A 16794584-C-A **
18858687-C-A 16746807-C-A **
18855441-T-A 16743561-T-A **
18753228-G-A 16641348-G-A **
18751604-G-T 16639724-G-T **
18751465-C-T 16639585-C-T **
18738166-A-G 16626286-A-G **
18688311-C-A 16576431-C-A **
17864914-C-A 15753034-C-A **
18623466-G-T 16511586-G-T **
18623300-G-T 16511420-G-T **
18603403-C-A 16491523-C-A **
18402429-A-G 16290549-A-G P6_Gap **
18395249-C-A 16283369-C-A BY121657 P6_Gap **
18389377-A-G 16277497-A-G P6_Gap **
18365607-T-G 16253727-T-G P6_Prx **
18262529-C-A 16150649-C-A **
18134880-A-G 16023000-A-G **
17966754-C-A 15854874-C-A **
17960551-C-T 15848671-C-T **
17929017-C-A 15817137-C-A **
17923732-A-G 15811852-A-G **
17883191-A-T 15771311-A-T **
6929582-C-A 7061541-C-A **
7164354-G-A 7296313-G-A **
6791681-C-A 6923640-C-A **
7109534-C-A 7241493-C-A **
10844897-C-T **
17217330-C-A 15105450-C-A **
10684175-G-A **
18749289-C-A 16637409-C-A **
7092591-C-A 7224550-C-A **
17055783-C-A 14943903-C-A **
11656608-C-A **
17951591-C-T 15839711-C-T **
8679500-T-C 8811459-T-C **
5535149-CTATA-C 5667108-CTATA-C 10×TA**
13838286-C-A 11717580-C-A **
10684139-G-C **
15688497-C-A 13576617-C-A **
10747906-G-T **
11671730-G-A **
18947998-C-A 16836118-C-A **
21093521-C-A 18931635-C-A **
15662753-C-A 13550873-C-A **
16016426-C-A 13904546-C-A **
28484407-C-A 26338260-C-A **
23493545-C-A 21331659-C-A **
27950910-A-AG 25804763-A-AG P1_Y2 **
21422161-CA-C 19260275-CA-C **
28716408-C-A 26570261-C-A **
10964769-T-C **
56850689-G-T **
15866089-C-A 13754209-C-A **
22659636-C-A 20497750-C-A **
18365590-C-G 16253710-C-G P6_Prx **
13874741-C-A 11754035-C-A **
14198781-C-A 12078075-C-A **
8343793-A-T 8475752-A-T **
2876719-C-A 3008678-C-A **
17201847-G-A 15089967-G-A **
4293421-C-A 4425380-C-A **
15179371-C-A 13067457-C-A **
22936315-AGA-T 20774429-AGA-T **
5317448-C-A 5449407-C-A **
10821920-TC-T **
6707512-T-C 6839471-T-C **
22842392-C-A 20680506-C-A **
11030176-T-A **
11030181-T-C **
24461733-C-A 22315586-C-A **
10815927-C-T **
14810906-C-A 12698977-C-A **
19021617-C-A 16909737-C-A **
21545361-C-A 19383475-C-A **
6736335-C-A 6868294-C-A **
17243777-C-A 15131897-C-A **
19249591-C-A 17137711-C-A **
6780902-T-G 6912861-T-G **
18072043-C-A 15960163-C-A **
10034416-C-A 10196807-C-A **
19527036-C-A 17415156-C-A **
7537706-G-T 7669665-G-T **
21738708-G-T 19576822-G-T **
10987750-A-C **
18857575-C-CTT 16745695-C-CTT 15×T**
22133941-G-T 19972055-G-T **
4544789-GA-G 4676748-GA-G 9×A**
6992595-C-A 7124554-C-A **
14108938-C-A 11988232-C-A **
22811259-C-A 20649373-C-A **
18266365-C-A 16154485-C-A **
10986741-T-A **
10986736-C-T **
10824167-C-T **
10892562-C-T **
16079390-C-A 13967510-C-A **
3853934-C-A 3985893-C-A **
17637724-C-A 15525844-C-A **
13295966-C-A 11140290-C-A **
10683272-C-G **
10824152-C-CACTTGAGTTA **
10683271-T-C **
14188098-C-A 12067392-C-A **
10844895-T-C **
16562857-C-A 14450977-C-A **
13463864-C-T 11308188-C-T FGC52588 **
22363801-G-T 20201915-G-T DYZ19 **
13688614-A-G 11532938-A-G *****
13393762-A-G 11238086-A-G **
6756906-C-T 6888865-C-T **
13463933-A-G 11308257-A-G **
21996387-G-T 19834501-G-T Z25209 **
8736111-G-T 8868070-G-T Z17999Y16002 **
8481049-TA-T 8613008-TA-T **
19012466-C-A 16900586-C-A **
7922570-G-T 8054529-G-T **
8697914-C-A 8829873-C-A **
17187369-C-A 15075489-C-A **
15740580-C-A 13628700-C-A **
10956571-T-A **
10987747-T-A **
21076912-C-A 18915026-C-A **
8766172-A-G 8898131-A-G **
4215642-C-A 4347601-C-A **
10987758-C-G **
10830976-T-G **
10684198-T-A **
15379827-C-A 13267947-C-A **
15619960-C-A 13508080-C-A **
21979941-G-A 19818055-G-A **
19509759-C-A 17397879-C-A **
28768603-C-A 26622456-C-A **
13945300-C-A 11824594-C-A **
7541050-C-A 7673009-C-A **
8911569-C-T 9043528-C-T FT8845 **
11015923-C-A **
28808573-T-A 26662426-T-A **
10809544-C-A **
5675345-G-T 5807304-G-T **
7320499-C-A 7452458-C-A **
10986774-T-C **
19528226-C-A 17416346-C-A **
16484388-C-A 14372508-C-A **
14279858-C-A 12159152-C-A **
17402273-C-A 15290393-C-A **
6828977-C-A 6960936-C-A **
18853217-C-A 16741337-C-A **
2681133-G-A 2813092-G-A **
2817030-C-A 2948989-C-A **
5494765-T-A 5626724-T-A **
2766787-C-A 2898746-C-A **
5586008-A-G 5717967-A-G **
2766780-A-T 2898739-A-T **
5586123-A-T 5718082-A-T **
5586131-A-T 5718090-A-T **
2758190-C-A 2890149-C-A **
2738906-G-A 2870865-G-A **
5596291-C-A 5728250-C-A **
2847121-C-A 2979080-C-A **
3605142-C-A 3737101-C-A **
17146517-C-A 15034637-C-A **
19283691-C-A 17171811-C-A **
14066881-C-A 11946175-C-A **
21237819-C-A 19075933-C-A **
4374719-C-T 4506678-C-T **
18130501-C-A 16018621-C-A **
5845429-G-T 5977388-G-T **
8977029-CAAAAAAA-C 9139420-CAAAAAAA-C 16×A**
10964795-T-G **
5265735-T-C 5397694-T-C **
2856493-G-A 2988452-G-A **
16288783-C-A 14176903-C-A **
4665767-C-A 4797726-C-A **
4357584-T-C 4489543-T-C **
4341848-G-T 4473807-G-T **
4305832-C-A 4437791-C-A **
4201616-A-G 4333575-A-G **
4190931-C-A 4322890-C-A **
4002459-A-G 4134418-A-G **
4403901-C-A 4535860-C-A **
3880252-A-T 4012211-A-T **
3831387-T-C 3963346-T-C **
4508836-G-T 4640795-G-T **
4726488-G-T 4858447-G-T **
2949300-A-G 3081259-A-G **
4950975-T-C 5082934-T-C **
3705746-T-G 3837705-T-G **
3609537-G-A 3741496-G-A **
3596775-C-A 3728734-C-A **
3274327-A-G 3406286-A-G **
5176554-G-T 5308513-G-T **
5190850-T-A 5322809-T-A **
5859004-C-A 5990963-C-A **
3067751-C-A 3199710-C-A **
5229828-C-A 5361787-C-A **
13197138-C-A 11041462-C-A **
4403896-C-A 4535855-C-A **
10693361-C-A **
6808159-C-A 6940118-C-A **
5851367-G-T 5983326-G-T **
5851424-G-T 5983383-G-T **
5888179-C-A 6020138-C-A **
19733305-G-GCC 17621425-G-GCC P5_Prx 8×C**
13328841-C-A 11173165-C-A BY210181 **
10986831-C-G **
5952739-G-T 6084698-G-T **
22997824-G-C 20835938-G-C **
14029530-C-A 11908824-C-A **
6410008-G-T 6541967-G-T **
14474565-C-A 12353834-C-A **
9129903-C-A 9292294-C-A **
18092874-C-A 15980994-C-A **
14035269-C-A 11914563-C-A **
2724704-C-A 2856663-C-A **
9508420-G-T 9670811-G-T **
6918506-G-A 7050465-G-A **
14328019-C-A 12207313-C-A **
21285014-C-A 19123128-C-A **
8027849-G-T 8159808-G-T **
6757209-C-A 6889168-C-A **
17019690-C-A 14907810-C-A **
16757202-C-A 14645322-C-A **
17347538-C-A 15235658-C-A **
28640514-C-A 26494367-C-A **
4271768-T-A 4403727-T-A **
19720740-A-T 17608860-A-T P5_Prx **
10684176-T-C **
10684172-T-C **
18635319-C-T 16523439-C-T **
9418968-C-A 9581359-C-A **
10884691-G-T **
8343786-C-A 8475745-C-A **
7412868-C-A 7544827-C-A **
19172799-GTT-G,GT 17060919-GTT-G,GT 17×T***
21970601-C-A 19808715-C-A ***
22422848-A-C 20260962-A-C DYZ19 ***
20039056-G-A 17927176-G-A P5_Prx ***
27822413-G-T 25676266-G-T P1_Y2 ***
25803036-C-A 23656889-C-A P1_b3 ***
22245118-C-T 20083232-C-T DYZ19 ***
22256120-A-G 20094234-A-G DYZ19 ******
7704011-C-A 7835970-C-A ***
22295677-C-CAAGA 20133791-C-CAAGA DYZ19 ***
22295674-A-C 20133788-A-C DYZ19 ***
10682542-C-A ***
7273014-C-A 7404973-C-A ***
22363626-G-T 20201740-G-T DYZ19 ***
56833318-T-A,C ***
56833338-C-G ***
56833308-TGC-CTC,T ***
22097560-CAT-C 19935674-CAT-C ***
15750502-CT-C,CTT 13638622-CT-C,CTT 18×T***
9073208-A-G 9235599-A-G ***
13859870-GAGTC-G 11739164-GAGTC-G ***
28479260-C-A 26333113-C-A ***
13722600-A-T 11566924-A-T ***
14369068-C-A 12248364-C-A ***
23775428-CTTT-C,CTT 21613542-CTTT-C,CTT 14×T***
23011008-G-T 20849122-G-T ***
7199201-G-T 7331160-G-T ***
23848878-C-A 21686992-C-A ***
7704942-C-A 7836901-C-A ***
7056229-C-A 7188188-C-A ***
25129531-C-G 22983384-C-G g1 ***
5212049-A-G 5344008-A-G ***
13228283-G-A 11072607-G-A Z3732 ***
22295679-G-A 20133793-G-A FGC78610 DYZ19 ***
24989111-C-T 22842964-C-T g1 ***
7335459-C-T 7467418-C-T FGC3462 ***
23511703-C-A 21349817-C-A ***
22427081-A-C 20265195-A-C DYZ19 ***
9462395-C-A 9624786-C-A ***
8649542-C-A 8781501-C-A ***
13452833-C-A 11297157-C-A ***
10824177-CA-C ***
5969609-C-A 6101568-C-A ***
17503951-G-T 15392071-G-T ***
16922323-C-A 14810443-C-A ***
9830600-G-T 9992991-G-T ***
16642026-AGAAACAAAAAT-A 14530146-AGAAACAAAAAT-A ***
14823790-C-A 12711857-C-A ***
16616557-C-A 14504677-C-A ***
21602954-GA-G 19441068-GA-G 8×A***
4302606-C-A 4434565-C-A ***
8768602-G-T 8900561-G-T ***
13314628-C-G 11158952-C-G ***
19482073-C-A 17370193-C-A ***
22737231-CAA-C,CAAA 20575345-CAA-C,CAAA 18×A***
13470448-C-G,T 11314772-C-G,T ***
15253696-C-A 13141782-C-A ***
17064738-C-A 14952858-C-A ***
13472773-C-A 11317097-C-A ***
14901380-C-A 12789447-C-A ***
13871219-T-C 11750513-T-C ***
10657378-T-A ***
10657379-C-G ***
17572215-C-A 15460335-C-A ***
7868993-T-A 8000952-T-A ***
14315378-C-A 12194672-C-A ***
14473799-C-A 12353068-C-A ***
14461030-A-G 12340303-A-G ***
17546322-C-A 15434442-C-A ***
15057737-A-T 12945829-A-T ***
7964434-C-A 8096393-C-A ***
3651231-G-T 3783190-G-T ***
8026755-C-A 8158714-C-A ***
8434007-C-A 8565966-C-A ***
20409732-G-T 18247846-G-T P5_Dst ***
8662205-C-A 8794164-C-A ***
22134063-C-T 19972177-C-T ***
8738070-T-A 8870029-T-A ***
16818971-GTATATA-G,GTA 14707091-GTATATA-G,GTA 21×TA***
13482679-C-A 11327003-C-A ***
19499011-A-G 17387131-A-G ***
8738115-C-A 8870074-C-A ***
19416342-A-G 17304462-A-G ***
19159194-C-T 17047314-C-T ***
8761316-C-A 8893275-C-A ***
3833652-CAAA-C,CAA 3965611-CAAA-C,CAA 16×A***
56833350-C-A ***
18751904-G-T 16640024-G-T ***
3116200-T-C 3248159-T-C ***
9697813-G-T 9860204-G-T IR3_Prx ***
18697956-C-A 16586076-C-A ***
9812343-C-A 9974734-C-A ***
9847546-C-A 10009937-C-A ***
19415949-C-A 17304069-C-A ***
9883581-TC-T 10045972-TC-T ***
2762718-T-C 2894677-T-C ***
27647732-C-A 25501585-C-A P1_Y2 ***
13453691-T-A 11298015-T-A ***
17811950-T-C 15700070-T-C ***
21775197-G-T 19613311-G-T ***
28784401-GAATGT-G,GAATGG 26638254-GAATGT-G,GAATGG ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B935461026645273678337428838
Kit: B93546907968574441837376044
Used in age calculations1026645274441837428838
Counts of SNPs1112
Variant counts last updated 2019-08-07 00:54:40.



Big Tree Main Page