Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > Z17611 > Z17612 > FGC17603 > FGC19785 > FGC19782 > 16713805-G-C

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
164262
FGC-BigY
5TA93
20835093-A-G 18673207-A-G FGC64908 P4_Gap ++
16863914-G-T 14752034-G-T FGC64907 YY++
14217934-T-TA 12097228-T-TA +**
6733142-AG-A 6865101-AG-A ++
14052945-C-G 11932239-C-G **
23079147-C-A 20917261-C-A **
7152593-C-A 7284552-C-A **
7050261-C-A 7182220-C-A **
14068414-C-A 11947708-C-A **
13227959-C-T 11072283-C-T **
16249081-C-A 14137201-C-A **
22703509-T-C 20541623-T-C **
15770625-G-T 13658745-G-T **
13542316-C-T 11386640-C-T **
13974178-C-T 11853472-C-T L473 **
5796782-C-A 5928741-C-A **
9806811-AT-A 9969202-AT-A **
23372379-C-A 21210493-C-A **
14742451-C-A 12630519-C-A **
22203967-A-T 20042081-A-T **
2795100-C-A 2927059-C-A **
28665087-G-A 26518940-G-A **
28690513-G-T 26544366-G-T **
13474053-A-T 11318377-A-T **
9908547-C-A 10070938-C-A **
14345079-C-A 12224374-C-A **
14301713-G-T 12181007-G-T **
18196301-C-T 16084421-C-T **
7158028-C-A 7289987-C-A **
16889800-C-A 14777920-C-A **
18184048-G-T 16072168-G-T **
7414024-C-A 7545983-C-A **
13527111-G-A 11371435-G-A **
10042971-G-T 10205362-G-T **
10043028-T-A 10205419-T-A **
10043030-C-A 10205421-C-A S3055 **
8735633-C-A 8867592-C-A **
19097248-C-A 16985368-C-A **
18905575-C-A 16793695-C-A **
18780521-T-C 16668641-T-C **
18756404-A-G 16644524-A-G **
7861137-C-A 7993096-C-A **
18853304-G-T 16741424-G-T **
10042960-T-A 10205351-T-A **
18210984-C-A 16099104-C-A **
18185874-C-A 16073994-C-A **
18211019-C-A 16099139-C-A **
25455962-C-T 23309815-C-T P2_r2 ***
24677779-A-G 22531632-A-G P3_b2 ***
25455970-T-A 23309823-T-A P2_r2 ***
25492367-G-T 23346220-G-T P2_r2 ***
25458278-G-T 23312131-G-T P2_r2 ***
25493372-G-T 23347225-G-T P2_r2 ***
25650794-C-T 23504647-C-T P1_b3 ***
25626707-T-A 23480560-T-A P1_b3 ***
25671349-T-C 23525202-T-C P1_b3 ***
25747269-A-T 23601122-A-T P1_b3 ***
25777753-G-T 23631606-G-T P1_b3 ***
24654520-A-G 22508373-A-G P3_b2 ***
26071315-C-A 23925168-C-A P1_Y1 ***
24606861-G-A 22460714-G-A P3_t2 ***
24582387-G-T 22436240-G-T P3_t2 ***
24573506-G-C 22427359-G-C P3_t2 ***
24728951-A-G 22582804-A-G P3_b2 ***
25379646-A-G 23233499-A-G P2_r2 ***
25466963-A-G 23320816-A-G P2_r2 ***
24975880-G-T 22829733-G-T g1 ***
25233818-G-A 23087671-G-A P2_r1 ***
25176961-C-T 23030814-C-T g1 ***
25158372-G-T 23012225-G-T g1 ***
25471372-A-G 23325225-A-G P2_r2 ***
25086224-C-A 22940077-C-A g1 ***
25471482-A-T 23325335-A-T P2_r2 ***
24983417-C-A 22837270-C-A g1 ***
25440118-T-C 23293971-T-C P2_r2 ***
25491019-C-A 23344872-C-A P2_r2 ***
25440123-G-T 23293976-G-T P2_r2 ***
24791207-G-C 22645060-G-C P3_b2 ***
25465418-C-A 23319271-C-A P2_r2 ***
25441163-G-T 23295016-G-T P2_r2 ***
24778638-C-T 22632491-C-T P3_b2 ***
24765683-C-A 22619536-C-A P3_b2 ***
24755418-C-A 22609271-C-A P3_b2 ***
24755355-G-T 22609208-G-T P3_b2 ***
18019516-G-GTA 15907636-G-GTA 8×TA***
24031657-C-A 21885510-C-A ***
24573498-G-T 22427351-G-T P3_t2 ***
21394912-C-A 19233026-C-A ***
22341323-C-G 20179437-C-G DYZ19 ***
22327123-C-G 20165237-C-G DYZ19 ***
22292652-G-T 20130766-G-T DYZ19 ***
22292452-G-A 20130566-G-A DYZ19 ***
22242531-G-T 20080645-G-T DYZ19 ***
22202557-C-A 20040671-C-A ***
22134356-G-T 19972470-G-T ***
22125653-T-C 19963767-T-C ***
22077981-C-A 19916095-C-A ***
21888213-A-T 19726327-A-T ***
21574009-G-A 19412123-G-A ***
21238728-A-C 19076842-A-C ***
22421043-C-G 20259157-C-G DYZ19 ***
21208880-C-A 19046994-C-A ***
21206872-A-T 19044986-A-T ***
21162447-C-A 19000561-C-A ***
21023093-T-C 18861207-T-C P4_Dst ***
20933385-G-T 18771499-G-T P4_Dst ***
20909444-A-G 18747558-A-G P4_Dst ***
20893529-T-C 18731643-T-C P4_Dst ***
20872483-T-G 18710597-T-G P4_Dst ***
20869304-C-A 18707418-C-A P4_Dst ***
20869301-G-T 18707415-G-T P4_Dst ***
20869284-A-T 18707398-A-T P4_Dst ***
20869209-C-T 18707323-C-T P4_Dst ***
22421006-T-G 20259120-T-G DYZ19 ***
22433046-T-G 20271160-T-G DYZ19 ***
24573476-G-T 22427329-G-T P3_t2 ***
23305728-C-A 21143842-C-A ***
24248172-G-T 22102025-G-T P3_b1 ***
24191982-T-A 22045835-T-A P3_b1 ***
24069544-C-T 21923397-C-T P3_b1 ***
24045719-A-T 21899572-A-T ***
24035452-G-T 21889305-G-T ***
24035330-T-C 21889183-T-C ***
24030877-C-T 21884730-C-T ***
24029374-C-T 21883227-C-T ***
24016976-A-G 21870829-A-G ***
23731635-G-T 21569749-G-T ***
23563902-C-G 21402016-C-G ***
23377788-C-A 21215902-C-A ***
23286747-T-C 21124861-T-C ***
22433491-A-C 20271605-A-C DYZ19 ***
23259319-C-A 21097433-C-A ***
23188995-G-T 21027109-G-T ***
23049772-A-T 20887886-A-T ***
23049771-A-T 20887885-A-T ***
22874273-C-A 20712387-C-A ***
22869026-C-A 20707140-C-A ***
22811905-C-G 20650019-C-G ***
22504114-T-G 20342228-T-G DYZ19 ***
22503653-G-T 20341767-G-T DYZ19 ***
22503335-G-T 20341449-G-T DYZ19 ***
22502626-G-T 20340740-G-T DYZ19 ***
22457269-A-T 20295383-A-T DYZ19 ***
26078478-C-A 23932331-C-A P1_Y1 ***
27056791-G-A 24910644-G-A P1_r4 ***
26131775-G-T 23985628-G-T P1_Y1 ***
13474026-GTT-ATA 11318350-GTT-ATA ***
13866202-ATATAAC-TTACAAT 11745496-ATATAAC-TTACAAT ***
13866169-TAAT-CAAA 11745463-TAAT-CAAA ***
13866155-AAAT-GAAG 11745449-AAAT-GAAG ***
13858803-TGGA-AGGG 11738097-TGGA-AGGG ***
13858760-CAAT-GAAC 11738054-CAAT-GAAC ***
13858249-CGG-GGA 11737543-CGG-GGA ***
13857849-TAGAATTTAATGTAAACTAA-CAGAATGTAATGTAATTGAT 11737143-TAGAATTTAATGTAAACTAA-CAGAATGTAATGTAATTGAT ***
13803290-CTG-ATA 11682584-CTG-ATA ***
13736413-CGAA-GGAC 11580737-CGAA-GGAC ***
13611907-TC-CG 11456231-TC-CG ***
13587406-C-CT 11431730-C-CT 9×T***
13480512-GCC-TCA 11324836-GCC-TCA ***
13472206-ACCCA-CCCCT 11316530-ACCCA-CCCCT ***
18480043-G-GA 16368163-G-GA P6_Dst 17×A***
13457678-ATCCA-TTCCC 11302002-ATCCA-TTCCC ***
13448633-GC-G 11292957-GC-G 13×CATTC***
13421564-CTAAG-GTAAC 11265888-CTAAG-GTAAC ***
13322824-TTGGC-GTGGT 11167148-TTGGC-GTGGT ***
10064087-CAACA-AAACG 10226478-CAACA-AAACG ***
10061002-A-AAAGTG 10223393-A-AAAGTG ***
10060987-C-TCTTT 10223378-C-TCTTT ***
10060945-TGAG-AGAA 10223336-TGAG-AGAA ***
10043028-TCC-ACA 10205419-TCC-ACA ***
10042971-GTATA-TTATG 10205362-GTATA-TTATG ***
10012825-CTCA-TTCG 10175216-CTCA-TTCG ***
9952695-TGGT-GGGC 10115086-TGGT-GGGC ***
9952642-TC-CT 10115033-TC-CT ***
16818971-G-GTATATATA 14707091-G-GTATATATA 21×TA***
20943477-CTG-C 18781591-CTG-C P4_Dst 12×TG***
9303558-GTT-G 9465949-GTT-G ***
27145490-T-TGA 24999343-T-TGA P1_g3 ***
58977274-TTTT-GTTG 56831127-TTTT-GTTG ***
58891022-AT-GC 56699848-AT-GC ***
58883946-CTGAG-TTGAC 56706921-CTCAG-GTCAA ***
58873121-AAT-CAA 56717748-ATT-TTG ***
58844637-A-ACTCCG 56746233-A-ACGGAG ***
28257592-G-GAT 26111445-G-GAT P1_b4 ***
28062628-CGGGA-GGGGG 25916481-CGGGA-GGGGG P1_Y2 ***
27963480-CAA-C 25817333-CAA-C P1_Y2 11×A***
27606049-AT-A 25459902-AT-A P1_Y2 ***
27499362-GAATATGTGG-AAAAATTTGA 25353215-GAATATGTGG-AAAAATTTGA P1_Y2 ***
27311363-AAAT-A 25165216-AAAT-A P1_g3 5×AAT***
27231099-GATCTTCAACTGCAGCCCACAATAAACA-G 25084952-GATCTTCAACTGCAGCCCACAATAAACA-G P1_g3 ***
27168309-CA-C 25022162-CA-C P1_g3 ***
27037868-CT-C 24891721-CT-C P1_r4 13×T***
21888250-AT-A 19726364-AT-A ***
27016334-TTTG-T 24870187-TTTG-T P1_r4 5×TTG***
26563876-CT-C 24417729-CT-C P1_g2 21×T***
25651479-ACAAATTTTGGCT-A 23505332-ACAAATTTTGGCT-A P1_b3 ***
25462529-GTTC-G 23316382-GTTC-G P2_r2 ***
25367292-CAGCTTTTACA-C 23221145-CAGCTTTTACA-C P2_r2 ***
24783542-TC-T 22637395-TC-T P3_b2 ***
24575873-ATTC-A 22429726-ATTC-A P3_t2 ***
24406466-CT-C 22260319-CT-C ***
24026328-CT-C 21880181-CT-C ***
22542294-CT-C 20380408-CT-C 8×T***
22420587-TA-T 20258701-TA-T DYZ19 ***
22360266-CCAGA-TCTGT 20198380-CCAGA-TCTGT DYZ19 ***
22302521-CT-C 20140635-CT-C DYZ19 ***
9944120-CA-TT 10106511-CA-TT ***
7464037-CAAA-C 7595996-CAAA-C IR1_L 19×A***
26280067-C-A 24133920-C-A P1_Y1 ***
27319723-G-T 25173576-G-T P1_g3 ***
27819862-C-A 25673715-C-A P1_Y2 ***
27792233-T-C 25646086-T-C P1_Y2 ***
27783132-G-T 25636985-G-T P1_Y2 ***
27771782-G-A 25625635-G-A P1_Y2 ***
27693089-T-C 25546942-T-C P1_Y2 ***
27552438-G-A 25406291-G-A P1_Y2 ***
27550484-T-G 25404337-T-G P1_Y2 ***
27421736-T-C 25275589-T-C P1_g3 ***
27376086-T-A 25229939-T-A P1_g3 ***
27372952-C-A 25226805-C-A P1_g3 ***
27344616-G-T 25198469-G-T P1_g3 ***
27339484-C-A 25193337-C-A P1_g3 ***
27289637-G-T 25143490-G-T P1_g3 ***
27988469-G-T 25842322-G-T P1_Y2 ***
27274048-A-G 25127901-A-G P1_g3 ***
27179191-G-T 25033044-G-T P1_g3 ***
27154861-A-T 25008714-A-T P1_g3 ***
27063011-A-T 24916864-A-T P1_r4 ***
20795347-G-T 18633461-G-T P4_Prx ***
27033094-C-T 24886947-C-T P1_r4 ***
26912668-C-A 24766521-C-A P1_r3 ***
26880283-G-T 24734136-G-T P1_r3 ***
26874723-G-A 24728576-G-A P1_r3 ***
26874548-G-T 24728401-G-T P1_r3 ***
26874082-C-A 24727935-C-A P1_r3 ***
26794982-G-T 24648835-G-T P1_g2 ***
26328835-G-T 24182688-G-T P1_Y1 ***
27861116-C-A 25714969-C-A P1_Y2 ***
28006447-A-C 25860300-A-C P1_Y2 ***
6347843-A-AGAAG 6479802-A-AGAAG ***
58844642-A-T 56746229-T-A ***
6347822-A-AAGAC 6479781-A-AAGAC ***
5016160-TG-T 5148119-TG-T ***
18316605-C-CT 16204725-C-CT P6_Prx 17×T***
59027105-G-T 56880958-G-T ***
58996505-T-A 56850358-T-A ***
58984744-G-A 56838597-G-A ***
58976401-A-C 56830254-A-C ***
58976379-A-G 56830232-A-G ***
58976372-T-C 56830225-T-C ***
58883953-G-A 56706918-C-T ***
58865934-A-T 56724937-T-A ***
58855347-C-G 56735524-G-C ***
58849494-A-T 56741377-T-A ***
58844574-C-G 56746297-G-C 11×CCATT***
28170678-G-T 26024531-G-T P1_b4 ***
58827419-G-C 56763452-C-G ***
58821051-C-A 56769820-G-T ***
28814772-A-T 26668625-A-T ***
28798284-G-A 26652137-G-A ***
28772003-A-G 26625856-A-G ***
28662110-G-T 26515963-G-T ***
28640295-G-A 26494148-G-A ***
28613145-C-A 26466998-C-A ***
28583638-C-A 26437491-C-A ***
28477574-C-A 26331427-C-A ***
28406816-T-A 26260669-T-A P1_gr2 ***
28360476-T-G 26214329-T-G P1_gr2 ***
28170683-A-G 26024536-A-G P1_b4 ***
20796774-C-T 18634888-C-T P4_Prx ***
18754892-T-A 16643012-T-A ***
20717772-G-A 18555886-G-A P4_Prx ***
22253404-A-G 20091518-A-G DYZ19 ***
10060929-A-G 10223320-A-G ***
10043799-T-C 10206190-T-C ***
23901360-T-G 21739474-T-G ***
10060940-A-C 10223331-A-C ***
23901381-A-G 21739495-A-G ***
23901400-A-G 21739514-A-G ***
23901412-A-G 21739526-A-G ***
23901418-T-G 21739532-T-G ***
59030573-T-A 56884426-T-A ***
58991490-G-A 56845343-G-A ***
27162014-T-A 25015867-T-A P1_g3 ***
13859380-AC-A 11738674-AC-A ***
13460789-T-A 11305113-T-A ***
25626747-A-G 23480600-A-G P1_b3 ***
10063464-C-A 10225855-C-A ***
10063432-C-T 10225823-C-T ***
10063366-T-A 10225757-T-A ***
13476298-GTG-CTT 11320622-GTG-CTT ***
28132491-C-T 25986344-C-T P1_b4 ***
20511112-C-T 18349226-C-T P5_Dst ***
13460816-T-A 11305140-T-A ***
58984738-GGCCTTG-TGCCTA 56838591-GGCCTTG-TGCCTA ***
22421036-CT-TC 20259150-CT-TC DYZ19 ***
25440081-C-T 23293934-C-T P2_r2 ***
10060909-T-G 10223300-T-G ***
10063445-G-C 10225836-G-C ***
22504251-G-T 20342365-G-T DYZ19 ***
6694344-T-C 6826303-T-C ***
7783095-C-A 7915054-C-A ***
7414011-C-A 7545970-C-A ***
7305729-G-A 7437688-G-A ***
7296000-C-A 7427959-C-A ***
7172603-C-A 7304562-C-A ***
7172441-C-A 7304400-C-A ***
7142843-C-A 7274802-C-A ***
7043465-C-A 7175424-C-A ***
6874526-T-C 7006485-T-C ***
6831296-C-A 6963255-C-A ***
6731381-C-A 6863340-C-A ***
6654184-C-A 6786143-C-A ***
2738730-A-T 2870689-A-T ***
6647036-T-C 6778995-T-C ***
6145780-C-T 6277739-C-T IR3_Dst ***
6000367-C-A 6132326-C-A ***
5923074-G-T 6055033-G-T ***
5864432-C-A 5996391-C-A ***
5846741-A-T 5978700-A-T ***
5472022-G-T 5603981-G-T ***
5195349-G-T 5327308-G-T ***
4301926-C-A 4433885-C-A ***
3815206-A-G 3947165-A-G ***
3804840-C-A 3936799-C-A ***
2758254-C-A 2890213-C-A ***
22431282-T-A 20269396-T-A DYZ19 ***
22503044-CTTAC-ATTAG 20341158-CTTAC-ATTAG DYZ19 ***
8072279-C-A 8204238-C-A ***
22342334-C-T 20180448-C-T DYZ19 ***
13399890-T-A 11244214-T-A ***
9937791-C-T 10100182-C-T ***
9127488-C-T 9289879-C-T ***
19646890-CT-C 17535010-CT-C P5_Prx 11×T***
9714716-CT-C 9877107-CT-C IR3_Prx 13×T***
26906694-G-GA 24760547-G-GA P1_r3 19×A***
58974222-ATTCG-TTTCC 56828075-ATTCG-TTTCC ***
16292609-C-T 14180729-C-T ***
26874716-G-A 24728569-G-A P1_r3 ***
9957953-G-A 10120344-G-A ***
9957871-G-A 10120262-G-A ***
24785778-C-CT 22639631-C-CT P3_b2 14×T***
22097200-C-A 19935314-C-A ***
13729272-T-C 11573596-T-C ***
9930039-G-A 10092430-G-A ***
9930013-C-G 10092404-C-G ***
9929998-G-T 10092389-G-T ***
59030475-C-CAAAA 56884328-C-CAAAA ***
13399807-G-A 11244131-G-A ***
13399871-G-C 11244195-G-C Z8149 ***
9957883-C-T 10120274-C-T ***
3522968-TA-T 3654927-TA-T 24×A***
13143380-G-A 10632866-G-A ***
58844633-T-C 56746238-A-G ***
13488959-GCC-TCG 11333283-GCC-TCG ***
13858215-T-A 11737509-T-A ***
59032483-T-C 56886336-T-C ***
13858234-A-G 11737528-A-G ***
10043758-T-A 10206149-T-A ***
24924289-A-C 22778142-A-C g1 ***
9952470-C-G 10114861-C-G ***
22343127-G-T 20181241-G-T DYZ19 ***
13143403-C-T 10632889-C-T ***
9930106-G-A 10092497-G-A ***
13301231-TAA-CAG 11145555-TAA-CAG ***
26874673-C-G 24728526-C-G P1_r3 ***
13857660-TT-GG 11736954-TT-GG ***
13857641-AAAT-GAAA 11736935-AAAT-GAAA ***
26874710-A-G 24728563-A-G P1_r3 ***
13858258-G-T 11737552-G-T ***
10043721-T-A 10206112-T-A ***
59032498-T-A 56886351-T-A ***
9930105-GG-CA 10092496-GG-CA ***
16292598-A-T 14180718-A-T ***
13421539-A-G 11265863-A-G ***
25781074-G-GTT 23634927-G-GTT P1_b3 12×T***
20478248-GT-G 18316362-GT-G P5_Dst 13×T***
24643282-C-T 22497135-C-T P3_t2 28×A***
10094446-T-C 10256837-T-C ***
10094431-T-G 10256822-T-G ***
22431313-G-A 20269427-G-A DYZ19 ***
13745438-TA-AG 11589762-TA-AG ***
13474044-TCA-CCT 11318368-TCA-CCT ***
10016081-AA-C 10178472-AA-C ***
7860142-G-T 7992101-G-T ***
8736920-C-A 8868879-C-A ***
20511157-C-T 18349271-C-T P5_Dst ***
15386599-G-A 13274719-G-A ***
16620337-A-C 14508457-A-C ***
16539783-G-T 14427903-G-T ***
16425658-C-A 14313778-C-A ***
16309275-T-A 14197395-T-A ***
16249091-C-A 14137211-C-A ***
16136087-A-T 14024207-A-T P8_Dst ***
15928700-C-A 13816820-C-A ***
15926894-C-A 13815014-C-A ***
15870430-C-A 13758550-C-A ***
15767062-C-A 13655182-C-A ***
15401217-C-A 13289337-C-A ***
15278912-C-A 13167011-C-A ***
16930025-C-A 14818145-C-A ***
15258488-C-A 13146572-C-A ***
15104985-T-C 12993073-T-C ***
15049892-T-G 12937983-T-G ***
14993911-C-A 12881996-C-A ***
14910996-C-A 12799063-C-A ***
14742112-T-A 12630180-T-A ***
14688677-C-A 12576743-C-A ***
14613825-A-G 12502023-A-G ***
14474907-T-C 12354176-T-C ***
14472994-G-A 12352263-G-A ***
14467752-C-A 12347021-C-A ***
14458433-C-A 12337706-C-A ***
16926127-G-A 14814247-G-A ***
17038371-C-T 14926491-C-T ***
14284058-T-A 12163352-T-A ***
19097335-C-A 16985455-C-A ***
20196230-T-C 18034344-T-C P5_Dst ***
20195437-G-T 18033551-G-T P5_Dst ***
20141196-T-G 18029316-T-G P5_Dst ***
20138036-A-T 18026156-A-T P5_Dst ***
20104787-G-T 17992907-G-T P5_Dst ***
19930595-T-C 17818715-T-C P5_Prx ***
19847718-G-T 17735838-G-T P5_Prx ***
19593646-A-G 17481766-A-G P5_Prx ***
19532888-C-A 17421008-C-A ***
19351441-C-A 17239561-C-A ***
19298876-G-A 17186996-G-A ***
18906387-C-A 16794507-C-A ***
17090709-C-A 14978829-C-A ***
26089060-T-A 23942913-T-A P1_Y1 ***
18516682-A-G 16404802-A-G P6_Dst ***
18515779-G-A 16403899-G-A P6_Dst ***
18342428-C-A 16230548-C-A P6_Prx ***
18296255-A-T 16184375-A-T P6_Prx ***
18011027-A-T 15899147-A-T P7_Dst ***
17886025-G-T 15774145-G-T ***
17718371-C-A 15606491-C-A ***
17668240-C-A 15556360-C-A ***
17616891-C-A 15505011-C-A ***
17327348-G-A 15215468-G-A ***
17159529-C-G 15047649-C-G ***
14286103-C-A 12165397-C-A ***
14263394-G-A 12142688-G-A ***
9055508-C-A 9217899-C-A ***
9917809-C-A 10080200-C-A ***
10060945-T-A 10223336-T-A ***
10060934-G-C 10223325-G-C ***
10043838-A-G 10206229-A-G ***
10043819-C-A 10206210-C-A ***
10014947-T-A 10177338-T-A ***
9957963-A-T 10120354-A-T ***
9952695-T-G 10115086-T-G A12179 ***
9952497-A-T 10114888-A-T ***
9937781-C-T 10100172-C-T ***
9936442-C-A 10098833-C-A ***
9917835-G-T 10080226-G-T ***
9917797-G-A 10080188-G-A ***
10060987-C-T 10223378-C-T ***
9830799-C-A 9993190-C-A ***
9714777-A-T 9877168-A-T IR3_Prx ***
9708632-G-A 9871023-G-A IR3_Prx ***
9693461-G-T 9855852-G-T IR3_Prx ***
9629529-G-T 9791920-G-T IR3_Prx ***
9629483-G-A 9791874-G-A IR3_Prx ***
9621722-T-A 9784113-T-A IR3_Prx ***
9500948-C-T 9663339-C-T ***
9496708-C-A 9659099-C-A ***
9434417-G-A 9596808-G-A ***
9428098-G-T 9590489-G-T ***
9368173-C-A 9530564-C-A ***
10060948-G-A 10223339-G-A ***
10063400-T-C 10225791-T-C ***
14255110-C-A 12134404-C-A ***
13809614-G-T 11688908-G-T ***
14180979-A-G 12060273-A-G ***
14114833-G-A 11994127-G-A ***
14108932-C-A 11988226-C-A ***
14079978-G-T 11959272-G-T ***
13973848-C-A 11853142-C-A ***
13973214-C-A 11852508-C-A ***
13927306-C-A 11806600-C-A ***
13902201-G-T 11781495-G-T ***
13859540-C-A 11738834-C-A ***
13859376-A-T 11738670-A-T ***
13859345-G-C 11738639-G-C ***
13800939-A-T 11680233-A-T ***
10063401-G-A 10225792-G-A ***
13736719-T-A 11581043-T-A ***
13734879-T-C 11579203-T-C ***
13468047-G-C 11312371-G-C ***
13460790-T-G 11305114-T-G ***
13460588-A-G 11304912-A-G ***
13460552-C-A 11304876-C-A ***
13433720-C-T 11278044-C-T ***
13421517-G-C 11265841-G-C ***
13143388-G-T 10632874-G-T ***
13143386-G-C 10632872-G-C ***
13143094-C-A 10632580-C-A ***
10064103-G-T 10226494-G-T ***
58981178-CTCT-GTCC 56835031-CTCT-GTCC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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