Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC5494 > Y15901 > Y9089

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
534182
BigY2
534182
13489925-C-A 11334249-C-A A*
13489930-T-C 11334254-T-C A*
19654064-T-G 17542184-T-G P5_Prx ***A*
18708372-CA-C 16596492-CA-C 9×A++
14368906-G-A 12248202-G-A Y137140 YY++
28799927-C-T 26653780-C-T Y113517 ++
23604553-C-G 21442667-C-G Y112006 YY++
22294375-G-T 20132489-G-T BY51362 DYZ19 ++
19452559-T-A 17340679-T-A Y104782 YY++
19169499-T-C 17057619-T-C Y103885 Y++
19123539-G-A 17011659-G-A Y103729 YY++
15108372-A-C 12996459-A-C Y93046 YY++
15052355-G-A 12940446-G-A Y92899 YY++
15552410-T-C 13440530-T-C Y94109 YY++
9387279-G-A 9549670-G-A Y88871 Y++
8755884-C-T 8887843-C-T Y87916 YY++
8653595-A-C 8785554-A-C Y87626 YY++
8508347-G-T 8640306-G-T Y87136 YY++
8368010-C-T 8499969-C-T Y86626 YY++
7168302-A-T 7300261-A-T Y83498 YY++
3388935-C-T 3520894-C-T Y81853 ++
16056237-C-A 13944357-C-A **
16146532-G-A 14034652-G-A P8_Dst **
15747380-C-A 13635500-C-A **
15753215-C-T 13641335-C-T **
15776953-T-C 13665073-T-C **
15778664-A-T 13666784-A-T **
16176549-C-A 14064669-C-A **
15997473-C-A 13885593-C-A **
15790547-C-A 13678667-C-A **
15975221-T-C 13863341-T-C **
16077010-CA-C 13965130-CA-C **
16047055-C-A 13935175-C-A **
16056174-C-A 13944294-C-A **
15714372-C-A 13602492-C-A **
15742468-C-A 13630588-C-A **
22563004-C-A 20401118-C-A **
15698631-G-C 13586751-G-C **
15698629-C-G 13586749-C-G **
15698620-G-T 13586740-G-T **
15698601-G-T 13586721-G-T **
15698579-A-T 13586699-A-T **
15698565-A-T 13586685-A-T **
15698561-T-A 13586681-T-A **
16180439-C-A 14068559-C-A **
15685130-C-A 13573250-C-A **
15683725-G-A 13571845-G-A **
15649912-C-T 13538032-C-T **
15497023-C-A 13385143-C-A **
15493150-C-A 13381270-C-A Y93926 **
15402957-C-A 13291077-C-A **
15392474-C-A 13280594-C-A **
16180263-T-C 14068383-T-C **
17029249-C-A 14917369-C-A **
16269387-GC-G 14157507-GC-G **
17175357-G-T 15063477-G-T **
17929179-G-T 15817299-G-T **
17752040-C-A 15640160-C-A **
17646831-T-A 15534951-T-A **
17629848-T-C 15517968-T-C **
17629830-C-A 15517950-C-A **
17561885-C-A 15450005-C-A **
17480144-A-C 15368264-A-C **
17467834-C-A 15355954-C-A **
17412232-T-G 15300352-T-G **
17270774-G-A 15158894-G-A **
17201824-C-G 15089944-C-G **
17201792-A-G 15089912-A-G **
17193118-C-A 15081238-C-A **
17167826-A-T 15055946-A-T **
16319750-C-A 14207870-C-A **
17160853-T-C 15048973-T-C **
17089099-C-G 14977219-C-G **
17086848-A-T 14974968-A-T **
17048037-C-A 14936157-C-A **
17042732-T-A 14930852-T-A **
15355260-C-A 13243379-C-A **
16999153-T-C 14887273-T-C **
16929693-C-A 14817813-C-A **
16843232-T-C 14731352-T-C **
16843196-A-C 14731316-A-C **
16743067-C-A 14631187-C-A **
16620135-C-A 14508255-C-A **
16592404-C-A 14480524-C-A **
16505161-A-G 14393281-A-G **
15369009-T-C 13257129-T-C **
15061759-T-A 12949851-T-A **
15338800-C-A 13226918-C-A **
14274036-C-A 12153330-C-A **
14493740-C-A 12381937-C-A **
14484466-C-T 12363735-C-T **
14473754-A-G 12353023-A-G **
14470835-G-A 12350104-G-A **
14451103-C-T 12330376-C-T **
14451026-A-C 12330299-A-C **
14451024-T-C 12330297-T-C **
14451015-C-G 12330288-C-G **
14430640-A-G 12309913-A-G **
14430563-A-T 12309836-A-T **
14344980-G-T 12224275-G-T **
14297344-C-A 12176638-C-A **
14274121-C-G 12153415-C-G **
14224167-A-T 12103461-A-T **
14509410-A-G 12397615-A-G **
14176566-C-A 12055860-C-A Z19069 **
14077055-C-T 11956349-C-T **
13999377-G-T 11878671-G-T **
13956911-T-A 11836205-T-A **
13922656-A-G 11801950-A-G **
13907740-C-A 11787034-C-A **
13881222-C-A 11760516-C-A **
13871333-C-G 11750627-C-G **
11668453-G-A **
11660005-T-C **
11656648-G-A **
11653587-G-A **
13605019-C-CA 11449343-C-CA 10×A**
13579843-C-A 11424167-C-A **
14493767-C-G 12381964-C-G **
14509425-T-G 12397630-T-G **
15313756-C-A 13201861-C-A **
14823783-C-A 12711850-C-A **
15302608-G-A 13190707-G-A **
15287216-G-T 13175315-G-T **
15286846-T-A 13174945-T-A **
15210798-G-T 13098884-G-T **
15210793-A-C 13098879-A-C **
15206029-A-G 13094115-A-G **
15202196-A-G 13090282-A-G **
15084577-A-G 12972667-A-G **
18059824-A-G 15947944-A-G **
15061748-G-A 12949840-G-A **
14919410-T-A 12807475-T-A **
14911104-GT-G 12799171-GT-G **
14881790-A-C 12769858-A-C **
14866150-T-C 12754220-T-C **
14815272-G-T 12703343-G-T **
14513883-T-C 12402088-T-C **
14765219-C-A 12653288-C-A **
14736285-C-A 12624353-C-A **
14649501-A-C 12537566-A-C **
14649457-G-A 12537522-G-A **
14649433-C-T 12537498-C-T **
14649426-C-A 12537491-C-A **
14649384-T-A 12537449-T-A **
14639323-C-A 12527392-C-A **
14620152-C-A 12508350-C-A **
14620085-C-A 12508283-C-A **
14610575-T-C 12498777-T-C **
14602708-C-A 12490910-C-A **
14602702-C-A 12490904-C-A **
14551575-C-G 12439776-C-G **
17929566-A-G 15817686-A-G **
18346521-T-G 16234641-T-G P6_Prx **
18085422-G-A 15973542-G-A **
22846022-G-A 20684136-G-A **
24381254-T-G 22235107-T-G **
23734285-C-A 21572399-C-A **
23510477-T-G 21348591-T-G **
23317683-TTTTGTA-T 21155797-TTTTGTA-T **
23315932-G-T 21154046-G-T **
23299725-G-A 21137839-G-A **
23199303-G-A 21037417-G-A **
23186136-C-A 21024250-C-A **
22993250-A-T 20831364-A-T **
22962036-G-TT 20800150-G-TT **
22956268-C-A 20794382-C-A **
22950339-G-T 20788453-G-T **
22888150-T-A 20726264-T-A **
22810645-C-A 20648759-C-A **
24381286-G-C 22235139-G-C **
22778223-G-T 20616337-G-T **
22661019-C-A 20499133-C-A **
22649526-C-A 20487640-C-A **
22619299-C-A 20457413-C-A **
22191681-A-G 20029795-A-G **
22176781-C-A 20014895-C-A **
22114826-GT-G 19952940-GT-G **
22092797-C-A 19930911-C-A **
21911340-C-T 19749454-C-T **
21899844-G-T 19737958-G-T **
21895592-T-G 19733706-T-G **
21695034-C-A 19533148-C-A **
21482832-A-G 19320946-A-G **
21464535-T-C 19302649-T-C **
24381256-G-C 22235109-G-C **
24381289-G-T 22235142-G-T **
21380618-C-A 19218732-C-A **
28568071-G-A 26421924-G-A **
56861864-C-A **
56838125-C-A **
56834596-T-G **
56834590-T-A **
56830828-T-A **
56830393-C-A **
56830389-C-G **
56829972-C-A **
56829969-A-C **
56823327-C-A **
28800185-C-A 26654038-C-A **
28768744-T-C 26622597-T-C **
28767142-C-A 26620995-C-A **
28657610-C-A 26511463-C-A **
28568056-A-T 26421909-A-T **
24400029-C-A 22253882-C-A **
28567988-T-C 26421841-T-C **
28522799-G-T 26376652-G-T **
28517323-G-T 26371176-G-T **
27872479-GAAA-G 25726332-GAAA-G P1_Y2 10×A**
27507451-G-T 25361304-G-T P1_Y2 **
27417750-G-GAT 25271603-G-GAT P1_g3 **
26730194-G-GA 24584047-G-GA P1_g2 **
26325186-C-G 24179039-C-G P1_Y1 **
26314725-T-C 24168578-T-C P1_Y1 **
26260543-G-T 24114396-G-T P1_Y1 **
25954052-A-T 23807905-A-T P1_Y1 **
25088278-T-C 22942131-T-C g1 **
24892479-G-T 22746332-G-T g1 **
24475447-C-A 22329300-C-A **
21397511-A-G 19235625-A-G **
21308335-C-T 19146449-C-T Y106078 **
18089076-G-C 15977196-G-C **
18659878-A-T 16547998-A-T **
19052362-C-A 16940482-C-A **
18969343-A-G 16857463-A-G **
18931766-G-T 16819886-G-T **
18929915-TGA-T 16818035-TGA-T **
18905509-A-T 16793629-A-T **
18901983-G-T 16790103-G-T **
18853145-C-A 16741265-C-A **
18748816-A-G 16636936-A-G **
18731011-A-C 16619131-A-C **
18701676-T-C 16589796-T-C **
18695835-C-A 16583955-C-A **
18682842-C-A 16570962-C-A **
18672577-G-C 16560697-G-C **
18659947-T-C 16548067-T-C **
18659809-C-A 16547929-C-A **
19055392-G-T 16943512-G-T **
18604548-A-G 16492668-A-G **
18578137-C-A 16466257-C-A **
18401137-T-A 16289257-T-A P6_Gap **
18379889-A-C 16268009-A-C P6_Prx **
18379887-A-C 16268007-A-C P6_Prx **
18346539-T-G 16234659-T-G P6_Prx **
18346529-A-ATATG 16234649-A-ATATG P6_Prx **
18346519-A-G 16234639-A-G P6_Prx **
18268076-A-AT 16156196-A-AT **
18224016-A-T 16112136-A-T **
18177089-A-G 16065209-A-G **
18174517-A-G 16062637-A-G **
18147553-T-C 16035673-T-C **
18093878-C-G 15981998-C-G **
19052388-C-A 16940508-C-A **
19130738-CTTTTTT-C 17018858-CTTTTTT-C 33×T**
21248536-T-G 19086650-T-G **
20340169-C-A 18178283-C-A P5_Dst **
21195683-A-T 19033797-A-T **
21185010-T-G 19023124-T-G **
21151633-T-C 18989747-T-C **
21141107-C-T 18979221-C-T **
21088675-C-A 18926789-C-A **
21068161-C-A 18906275-C-A **
20908171-C-A 18746285-C-A P4_Dst **
20865491-A-G 18703605-A-G FGC72225 P4_Dst **
20804895-A-C 18643009-A-C P4_Gap **
20755647-C-A 18593761-C-A P4_Prx **
20751879-C-CTA 18589993-C-CTA P4_Prx **
20723025-G-T 18561139-G-T P4_Prx **
20340178-A-T 18178292-A-T P5_Dst **
20340170-A-G 18178284-A-G P5_Dst **
19817548-A-AT 17705668-A-AT P5_Prx **
19244659-C-A 17132779-C-A **
19817542-A-T 17705662-A-T P5_Prx **
19817500-T-G 17705620-T-G P5_Prx **
19721224-T-C 17609344-T-C P5_Prx **
19706388-A-C 17594508-A-C P5_Prx **
19648810-A-T 17536930-A-T P5_Prx **
19648739-C-T 17536859-C-T P5_Prx **
19610392-C-T 17498512-C-T P5_Prx **
19610391-A-C 17498511-A-C P5_Prx **
19610377-A-T 17498497-A-T P5_Prx **
19610376-G-A 17498496-G-A P5_Prx **
19610357-C-G 17498477-C-G P5_Prx **
19610290-C-T 17498410-C-T P5_Prx **
19425049-G-T 17313169-G-T **
19351385-A-G 17239505-A-G **
13480359-T-C 11324683-T-C **
13456922-C-A 11301246-C-A **
13349557-C-G 11193881-C-G **
21775219-G-T 19613333-G-T **
2708561-C-A 2840520-C-A **
10785323-C-G **
10785278-C-CATCAAATAGA **
2855442-C-A 2987401-C-A **
20626066-A-AT 18464180-A-AT P4_Prx **
18223728-C-A 16111848-C-A **
27616525-G-T 25470378-G-T P1_Y2 **
15279037-T-G 13167136-T-G **
18192559-C-A 16080679-C-A **
19610356-T-A 17498476-T-A P5_Prx **
10824126-C-G **
10987184-T-G **
22962043-A-G 20800157-A-G **
17151354-C-A 15039474-C-A **
2767929-C-A 2899888-C-A **
9446134-G-T 9608525-G-T **
18346551-T-G 16234671-T-G P6_Prx **
10796694-T-A **
23337112-C-A 21175226-C-A **
10682567-C-T **
11643752-T-C **
24283330-T-G 22137183-T-G P3_t1 **
3696487-G-T 3828446-G-T **
9865324-C-A 10027715-C-A **
20340191-G-C 18178305-G-C P5_Dst **
20340181-C-T 18178295-C-T P5_Dst **
18812221-C-A 16700341-C-A **
9952060-C-A 10114451-C-A **
2738736-A-T 2870695-A-T **
2790551-C-A 2922510-C-A **
10964167-C-A **
4473133-A-G 4605092-A-G **
5194008-T-C 5325967-T-C **
5170185-T-A 5302144-T-A **
5165204-C-A 5297163-C-A **
5108011-G-A 5239970-G-A **
4961022-G-T 5092981-G-T **
4936658-G-A 5068617-G-A **
4920184-C-A 5052143-C-A **
4863466-T-C 4995425-T-C **
4804669-C-A 4936628-C-A **
4700738-C-A 4832697-C-A **
4616530-C-A 4748489-C-A **
4557635-T-G 4689594-T-G **
4557517-G-T 4689476-G-T **
4473008-C-T 4604967-C-T **
2812824-C-A 2944783-C-A **
4374831-TA-T 4506790-TA-T **
4272505-C-A 4404464-C-A **
4261812-C-A 4393771-C-A **
4114685-ATTTT-A 4246644-ATTTT-A 15×T**
3855603-G-T 3987562-G-T **
3550443-C-A 3682402-C-A **
3501064-C-T 3633023-C-T **
3501053-T-G 3633012-T-G **
3285897-T-A 3417856-T-A **
3218201-T-G 3350160-T-G **
3151658-G-T 3283617-G-T **
3123143-C-A 3255102-C-A **
2835668-C-A 2967627-C-A **
27424010-G-T 25277863-G-T P1_g3 **
11672448-C-A **
5253604-GT-G 5385563-GT-G **
21489111-C-A 19327225-C-A **
7241796-G-T 7373755-G-T **
4063963-C-A 4195922-C-A **
28725993-C-A 26579846-C-A **
13273092-C-A 11117416-C-A **
10669067-T-C **
14649461-G-T 12537526-G-T **
15742508-C-A 13630628-C-A **
10987866-C-A **
20762311-T-G 18600425-T-G P4_Prx **
15157308-C-A 13045395-C-A **
17871879-C-A 15759999-C-A **
14554285-C-A 12442486-C-A **
27994689-A-AG 25848542-A-AG P1_Y2 **
15605382-C-A 13493502-C-A **
10974003-A-C **
17605202-C-A 15493322-C-A **
2682280-C-A 2814239-C-A **
7165362-A-G 7297321-A-G **
18959212-CTCA-C 16847332-CTCA-C **
10967552-C-G **
15324158-C-T 13212276-C-T **
10974016-C-G **
22845931-A-T 20684045-A-T ****
16351596-G-A 14239716-G-A AF10 ****
13717105-G-T 11561429-G-T BY89695 *****
22962057-G-C 20800171-G-C **
13642285-C-A 11486609-C-A **
22164458-G-A 20002572-G-A **
10973976-C-G **
10974004-CTCCAT-C **
15113671-C-A 13001758-C-A **
14088380-C-A 11967674-C-A **
13720891-A-G 11565215-A-G **
10870671-T-C **
10870629-T-A **
20685108-C-A 18523222-C-A P4_Prx **
23058690-T-C 20896804-T-C **
19112303-C-A 17000423-C-A **
8181232-G-T 8313191-G-T **
10755360-T-A **
10661326-G-T **
17201800-A-G 15089920-A-G **
14029126-C-A 11908420-C-A **
13962132-A-T 11841426-A-T **
10896268-C-A **
14533556-C-A 12421757-C-A **
28800644-C-A 26654497-C-A **
7437535-C-A 7569494-C-A **
6809373-C-A 6941332-C-A **
10794800-C-A **
13717743-A-T 11562067-A-T **
19183858-T-C 17071978-T-C **
10625842-C-A **
7101157-G-T 7233116-G-T **
9583317-C-A 9745708-C-A IR3_Prx **
10987203-A-T **
17383630-T-C 15271750-T-C **
18317619-G-T 16205739-G-T P6_Prx **
2730114-G-T 2862073-G-T **
10967554-A-C **
5213990-C-T 5345949-C-T **
33245-C-A **
5253659-T-C 5385618-T-C **
10988893-T-G **
9869393-C-A 10031784-C-A **
9186199-C-A 9348590-C-A **
9070017-C-A 9232408-C-A **
10987889-C-A **
9048010-C-A 9210401-C-A **
9120863-A-C **
8902059-T-G 9034018-T-G **
5274337-C-A 5406296-C-A **
8900965-T-A 9032924-T-A **
8900964-T-C 9032923-T-C **
8851232-G-T 8983191-G-T **
8851223-T-C 8983182-T-C **
10987884-C-A **
8725281-C-A 8857240-C-A **
8379736-C-A 8511695-C-A **
8262719-C-A 8394678-C-A **
8181224-C-T 8313183-C-T **
8052467-G-C 8184426-G-C **
7974710-T-C 8106669-T-C **
11019256-A-C **
11019286-T-C **
7714035-C-A 7845994-C-A **
7701930-C-A 7833889-C-A **
10973988-A-T **
9891163-T-A 10053554-T-A **
9891180-A-C 10053571-A-C **
7418606-C-A 7550565-C-A **
10987823-C-CCACTA **
10971861-T-G **
10971154-C-A **
10967538-C-CCGATG **
10933199-G-T **
10862151-A-C **
10834316-A-T **
10807330-C-G **
10756919-G-T **
10689045-T-TTCCAC **
10684294-C-A **
10987795-A-C **
10669065-T-A **
9938299-G-C 10100690-G-C **
10987829-C-G **
10666964-C-A **
10660146-C-T **
10657405-C-A **
10657314-G-GCACAC **
10987840-A-AC **
10657269-C-G **
10031287-C-A 10193678-C-A **
10987844-C-CCTCG **
10010666-T-C 10173057-T-C **
10987852-T-A **
9965240-TGGATGAA-T 10127631-TGGATGAA-T **
7444304-T-A 7576263-T-A **
11034853-C-A **
7348442-T-C 7480401-T-C **
13319082-C-T 11163406-C-T **
7018053-G-A 7150012-G-A **
6979627-C-A 7111586-C-A **
6953287-C-A 7085246-C-A **
6915417-C-A 7047376-C-A **
6828547-T-G 6960506-T-G **
13230414-C-A 11074738-C-A **
13233516-G-T 11077840-G-T **
6617772-G-T 6749731-G-T **
6510722-C-A 6642681-C-A **
5999573-G-A 6131532-G-A **
5887680-G-A 6019639-G-A **
5877720-G-T 6009679-G-T **
11038224-C-A **
13319083-A-G 11163407-A-G **
5842096-A-G 5974055-A-G **
5690943-T-A 5822902-T-A **
5586116-T-A 5718075-T-A **
5524795-C-T 5656754-C-T **
5459097-A-G 5591056-A-G **
5450020-G-T 5581979-G-T **
5449986-A-G 5581945-A-G **
13319089-T-C 11163413-T-C **
5368354-A-T 5500313-A-T **
5368330-A-C 5500289-A-C **
5368315-T-C 5500274-T-C **
7042778-A-G 7174737-A-G **
7082671-C-A 7214630-C-A **
10987194-T-TTCTCC **
13226776-C-A 11071100-C-A **
7223194-CAA-C 7355153-CAA-C 22×A**
7255350-T-C 7387309-T-C **
7294514-A-C 7426473-A-C **
7294518-A-T 7426477-A-T **
7305713-T-C 7437672-T-C **
7197420-A-C 7329379-A-C **
7192001-C-A 7323960-C-A **
7186198-G-A 7318157-G-A **
13224699-C-T 11069023-C-T **
7179937-C-A 7311896-C-A **
7223217-GA-G 7355176-GA-G **
7170774-C-T 7302733-C-T **
7330256-C-A 7462215-C-A **
7143499-C-A 7275458-C-A **
7115483-C-A 7247442-C-A **
7101158-A-T 7233117-A-T **
13218938-G-A 11063262-G-A **
7101156-A-T 7233115-A-T **
7090616-C-A 7222575-C-A **
13196036-T-C 11040360-T-C **
2783688-T-A 2915647-T-A ***
18471858-TACAC-T 16359978-TACAC-T P6_Dst 12×AC***
14071377-TTTG-T 11950671-TTTG-T ***
27521988-T-A 25375841-T-A P1_Y2 ***
6226001-T-C 6357960-T-C IR3_Dst ***
11014398-A-C ***
14224492-C-A 12103786-C-A ***
6776495-T-C 6908454-T-C ***
19942403-A-G 17830523-A-G P5_Prx ***
22284065-T-C 20122179-T-C DYZ19 ***
22240443-T-A 20078557-T-A DYZ19 ***
13698858-G-T 11543182-G-T ***
21146267-G-A,T 18984381-G-A,T ***
24359655-C-T 22213508-C-T ***
2832740-C-A 2964699-C-A ***
19145325-TA-T 17033445-TA-T 9×A***
18050232-C-A 15938352-C-A ***
13992173-C-A 11871467-C-A ***
7250361-C-A 7382320-C-A ***
18890882-ATTT-A,AT 16779002-ATTT-A,AT 17×T***
18694659-C-A 16582779-C-A ***
6759319-C-A 6891278-C-A ***
16818677-A-AT 14706797-A-AT 12×AT***
16345132-CTCCTCT-C,CTCTTCT 14233252-CTCCTCT-C,CTCTTCT ***
16357366-G-A 14245486-G-A ***
16819025-C-A 14707145-C-A ***
4521545-C-A 4653504-C-A ***
13320161-A-G 11164485-A-G ***
5865294-C-A 5997253-C-A ***
5446589-C-A 5578548-C-A ***
15368984-C-A 13257104-C-A ***
15158611-GAA-G,GA 13046697-GAA-G,GA 15×A***
23886985-C-A 21725099-C-A ***
22044249-C-A 19882363-C-A ***
23831276-TTTG-T,TT 21669390-TTTG-T,TT ***
15859437-CTTTT-C,CTTT 13747557-CTTTT-C,CTTT 17×T***
22914674-CAAAAAAAAAA-C,CAAAA 20752788-CAAAAAAAAAA-C,CAAAA 27×A***
22855090-G-T 20693204-G-T ***
10657314-G-C,T ***
14394456-G-A 12273752-G-A ***
10012748-G-T 10175139-G-T ***
23316245-C-A 21154359-C-A ***
15477729-A-T 13365849-A-T ***
9852649-A-G 10015040-A-G ***
9503886-G-T 9666277-G-T ***
21211029-C-A 19049143-C-A ***
15305798-C-A 13193897-C-A ***
8662282-C-A 8794241-C-A ***
8385543-C-A 8517502-C-A ***
8333687-C-A 8465646-C-A ***
18097772-C-A 15985892-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 5341821049673075686747642418
Kit: 534182940014976811087595649
Used in age calculations1049673076811087642418
Counts of SNPs1412
Variant counts last updated 2018-06-07 23:50:22.



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