Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > Z46512 > FGC78762 > BY1058

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
28147535-AT-A 26001388-AT-A P1_b4 +
17282710-A-T 15170830-A-T Y98667 YY+
8491574-G-A 8623533-G-A Y87079 YY+
8819982-A-T 8951941-A-T Y88094 YY+
9814875-G-A 9977266-G-A Y89259 YY+
13672119-G-A 11516443-G-A BY87865 +
14159089-G-A 12038383-G-A Y90478 YY+
14248934-G-T 12128228-G-T Y90815 YY+
14822013-T-C 12710080-T-C Y92279 YY+
15791842-A-G 13679962-A-G Y94810 YY+
16368139-A-G 14256259-A-G Y96118 YY+
17654651-C-T 15542771-C-T ZS2496 M12115 YY+
8459420-T-C 8591379-T-C M12106 YY+
18258909-C-T 16147029-C-T Y101786 +
21114781-C-A 18952895-C-A Y105460 YY+
21816335-C-G 19654449-C-G M12121 YY+
23424010-G-C 21262124-G-C Y111515 YY+
23424101-C-A 21262215-C-A Y111516 YY+
23752892-T-C 21591006-T-C BY147402 Y+
23791759-TAC-T 21629873-TAC-T +
24430886-T-G 22284739-T-G Y112837 Y+
26148515-T-G 24002368-T-G BY226691 P1_Y1 +
8482812-G-C 8614771-G-C Y87042 YY+
18145837-G-C 16033957-G-C Y101446 YY+
8339933-G-A 8471892-G-A Y86525 YY+
2691161-T-C 2823120-T-C Y81215 YY+
8266549-T-C 8398508-T-C Y86315 YY+
14116679-G-C 11995973-G-C Z27436 YY10×ATAC+
6753316-C-G 6885275-C-G L217 S1849 FGC7917 YY+
2661969-A-T 2793928-A-T Y81160 YY+
23081878-C-T 20919992-C-T CTS11359 YY+
7515165-T-A 7647124-T-A Y84182 Y+
7755506-G-A 7887465-G-A M12101 YY+
7874219-C-T 8006178-C-T M12102 YY+
8127246-C-T 8259205-C-T Y85896 YY+
7358802-T-C 7490761-T-C M12100 YY+
22546304-A-C 20384418-A-C **
26948712-C-T 24802565-C-T P1_r3 ***
25136658-T-C 22990511-T-C g1 ***
23663763-C-T 21501877-C-T ***
22448301-T-C 20286415-T-C DYZ19 ***
22447705-C-G 20285819-C-G DYZ19 ***
24099883-G-A 21953736-G-A P3_b1 ***
26344249-C-CA 24198102-C-CA P1_Y1 14×A***
25051348-G-A 22905201-G-A g1 ***
25868088-G-T 23721941-G-T P1_Y1 ***
25138698-ACAGGTTCT-A 22992551-ACAGGTTCT-A g1 ***
25850220-T-C 23704073-T-C P1_Y1 ***
25970153-T-C 23824006-T-C P1_Y1 ***
26018635-GAC-G 23872488-GAC-G P1_Y1 ***
26089576-C-G 23943429-C-G BY226628 P1_Y1 ***
22452572-G-T 20290686-G-T DYZ19 ***
26171054-T-C 24024907-T-C P1_Y1 ***
26714416-A-T 24568269-A-T P1_g2 ***
22451624-T-C 20289738-T-C DYZ19 ***
22283187-C-A 20121301-C-A DYZ19 ***
23180686-G-T 21018800-G-T ***
22451615-T-A 20289729-T-A DYZ19 ***
3716106-G-T 3848065-G-T BY57822 ***
22446748-A-C 20284862-A-C DYZ19 ***
17989968-C-T 15878088-C-T P7_Prx ***
22302747-G-T 20140861-G-T BY216949 DYZ19 ***
19971963-G-C 17860083-G-C P5_Prx ***
19990552-C-T 17878672-C-T P5_Prx ***
20779074-C-A 18617188-C-A P4_Prx ***
22447399-T-G 20285513-T-G DYZ19 ***
22453047-G-A 20291161-G-A DYZ19 ***
22221104-C-A 20059218-C-A DYZ19 ***
22230075-C-T 20068189-C-T DYZ19 ***
22230327-G-A 20068441-G-A DYZ19 ***
22259238-C-T 20097352-C-T DYZ19 ***
22265607-T-A 20103721-T-A DYZ19 ***
22306840-GGTGA-G 20144954-GGTGA-G DYZ19 ***
22437625-T-C 20275739-T-C BY30377 DYZ19 ***
22441543-A-G 20279657-A-G DYZ19 ***
25161962-A-AT 23015815-A-AT g1 11×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 4829531052271576076317685842
Used in age calculations1052271576076317685842
Counts of SNPs2930
Variant counts last updated 2020-07-20 02:40:33.

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