Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z367/S255 > L20/S144 > Z46420 > S16553 > S18403

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
9162389-G-C 9324780-G-C Y88752 +
23603441-GT-G 21441555-GT-G 10×T+
2752985-G-A 2884944-G-A BY56260 YY+
7164798-T-G 7296757-T-G Y83493 YY+
7994756-T-C 8126715-T-C Y85559 YY+
8055279-TATA-T 8187238-TATA-T +
13703501-G-T 11547825-G-T BY89081 +
14865664-GCA-G 12753730-GCA-G +
15052200-A-T 12940291-A-T Y92898 YY+
15061387-A-G 12949479-A-G Y92927 YY+
13210579-C-T 11054903-C-T BY84446 +
15219383-T-G 13107469-T-G Y93301 Y+
15337980-T-C 13226098-T-C Y93556 YY+
22460079-A-G 20298193-A-G BY21212 DYZ19 +
15724611-G-A 13612731-G-A Y94578 YY+
17277623-C-T 15165743-C-T Y98652 YY+
17799330-T-C 15687450-T-C Y100252 YY+
27894163-A-G 25748016-A-G BY24882 P1_Y2 +
23583264-C-G 21421378-C-G Y111961 YY+
22239352-T-C 20077466-T-C DYZ19 +
22239324-A-G 20077438-A-G BY213927 DYZ19 +
18825129-T-C 16713249-T-C Y102782 YY+
22190317-G-A 20028431-G-A Y108645 YY+
22180820-G-A 20018934-G-A Y108608 YY+
22094483-C-T 19932597-C-T Y108368 YY+
22003078-C-T 19841192-C-T Y108112 YY+
21609850-G-T 19447964-G-T Y107012 YY+
19229472-C-G 17117592-C-G Y104083 YY+
28581303-G-A 26435156-G-A CTS12358 **
22239333-AAT-A 20077447-AAT-A DYZ19 **
20904343-G-A 18742457-G-A BY212873 P4_Dst **
3436321-C-T 3568280-C-T **
24508404-C-T 22362257-C-T Y113030 **
10042541-G-T 10204932-G-T **
28581291-G-T 26435144-G-T CTS12357 **
59032070-CT-C 56885923-CT-C **
10042924-C-T 10205315-C-T **
10042761-G-A 10205152-G-A **
10042540-T-C 10204931-T-C **
17060122-G-T 14948242-G-T CTS6686 **
9950703-C-T 10113094-C-T **
9950682-A-G 10113073-A-G **
9950643-T-C 10113034-T-C **
9950671-T-C 10113062-T-C **
9950674-C-T 10113065-C-T **
10042847-C-T 10205238-C-T **
10043658-A-G 10206049-A-G **
10042830-C-T 10205221-C-T **
28581276-C-T 26435129-C-T CTS12356 **
10043608-A-C 10205999-A-C **
22300608-G-A 20138722-G-A DYZ19 ***
22301248-T-A 20139362-T-A DYZ19 ***
22301259-C-A 20139373-C-A DYZ19 ***
22301373-T-A 20139487-T-A DYZ19 ***
22463873-T-A 20301987-T-A DYZ19 ***
22239331-A-ACC 20077445-A-ACC DYZ19 ***
22314660-C-A 20152774-C-A DYZ19 ***
22301384-T-A 20139498-T-A DYZ19 ***
22301385-C-T 20139499-C-T DYZ19 ***
22233148-T-G 20071262-T-G DYZ19 ***
24247095-C-G 22100948-C-G P3_b1 ***
20000351-T-C 17888471-T-C Z17295 Z17301Z17301 Z30499 P5_Prx ***
24949802-T-TTTGTTG 22803655-T-TTTGTTG g1 7×TTG***
24969517-A-G 22823370-A-G g1 ***
24998893-G-A 22852746-G-A g1 ***
25129357-G-A 22983210-G-A g1 ***
25813789-G-C 23667642-G-C P1_b3 ***
25931271-T-G 23785124-T-G P1_Y1 ***
26043590-G-A 23897443-G-A P1_Y1 ***
26216805-G-C 24070658-G-C P1_Y1 ***
13809789-G-C 11689083-G-C ***
22239341-G-A 20077455-G-A BY213932 DYZ19 ***
22225714-T-A 20063828-T-A DYZ19 ***
10086388-T-A 10248779-T-A ***
13136961-T-A 10626447-T-A ***
6267977-A-T 6399936-A-T IR3_Dst ***
6359286-G-A 6491245-G-A ***
9924597-A-G 10086988-A-G ***
8377909-TACACACACAC-T 8509868-TACACACACAC-T 16×AC***
10086367-A-T 10248758-A-T ***
13136953-T-G 10626439-T-G ***
13725006-G-A 11569330-G-A ***
13136942-G-A 10626428-G-A ***
23988000-G-GCA 21841853-G-GCA 11×CA***
13866199-G-A 11745493-G-A ***
22225719-C-T 20063833-C-T ZS4164 DYZ19 ***
10086360-A-C 10248751-A-C ***
19732568-C-G 17620688-C-G P5_Prx ***
19732854-A-T 17620974-A-T P5_Prx ***
20739832-C-T 18577946-C-T P4_Prx ***
58993942-T-A 56847795-T-A ***
22423448-A-G 20261562-A-G DYZ19 ***
22239345-T-C 20077459-T-C BY16383 DYZ19 ***
13136965-T-C 10626451-T-C ***
26317648-T-A 24171501-T-A P1_Y1 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: B772451079049578412857933628
Used in age calculations1079049578412857933628
Counts of SNPs1817
Variant counts last updated 2022-07-25 03:20:30.

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