Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > S756 > Z16328 > FGC32449 > BY154

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
QZZ5C
5001002-A-G 5132961-A-G FGC50084 +
19289986-T-C 17178106-T-C FGC50090 YY+
8862847-T-G 8994806-T-G FGC50086 YY+
19265501-C-T 17153621-C-T FGC50089 YY+
5413861-T-C 5545820-T-C FGC50085 *
10062149-C-T 10224540-C-T FGC50087 *
15426761-A-G 13314881-A-G FGC50088 YY*
58876567-A-C 56714304-T-G **
3009913-C-T 3141872-C-T **
22774869-CT-C 20612983-CT-C 21×T***
5134869-A-G 5266828-A-G **
7577643-C-T 7709602-C-T **
14343010-TTTTA-T 12222305-TTTTA-T 6×TTTA**
15424313-GAA-G 13312433-GAA-G 14×A***
5872773-A-G 6004732-A-G **
13924970-CAAAA-C 11804264-CAAAA-C 20×A**
24432837-CA-C 22286690-CA-C 17×A***
59004990-G-C 56858843-G-C **
9782201-A-T 9944592-A-T **
59032545-A-C 56886398-A-C **
59032561-C-A 56886414-C-A **
3256285-T-C 3388244-T-C **
59032570-C-G 56886423-C-G **
3508821-C-A 3640780-C-A **
4686627-T-C 4818586-T-C **
13423292-A-G 11267616-A-G **
14764914-AT-A 12652983-AT-A 23×T***
28686244-G-A 26540097-G-A **
4686645-T-C 4818604-T-C **
4765616-G-T 4897575-G-T **
28686213-G-A 26540066-G-A **
28686209-A-G 26540062-A-G **
58838820-C-A 56752051-G-T ***
26508426-T-C 24362279-T-C P1_Y1 ***
26444125-A-C 24297978-A-C P1_Y1 ***
58837621-C-A 56753250-G-T ***
26099094-T-A 23952947-T-A P1_Y1 ***
25521560-C-A 23375413-C-A P1_gr1 ***
58846558-T-A 56744313-A-T ***
58866323-A-C 56724548-T-G ***
24997972-C-T 22851825-C-T g1 ***
24926216-G-T 22780069-G-T g1 ***
24926210-A-C 22780063-A-C g1 ***
24922240-T-G 22776093-T-G g1 ***
58837626-T-A 56753245-A-T ***
28700704-G-A 26554557-G-A ***
28780290-C-T 26634143-C-T ***
27253712-A-T 25107565-A-T P1_g3 ***
27340148-G-A 25194001-G-A P1_g3 ***
27503083-G-A 25356936-G-A P1_Y2 ***
27516448-A-T 25370301-A-T P1_Y2 ***
27584365-A-C 25438218-A-C P1_Y2 ***
27749670-G-A 25603523-G-A P1_Y2 ***
28239860-A-T 26093713-A-T P1_b4 ***
28324446-T-C 26178299-T-C P1_b4 ***
24141847-G-A 21995700-G-A P3_b1 ***
28369936-T-A 26223789-T-A P1_gr2 ***
28509360-T-C 26363213-T-C ***
28600340-T-A 26454193-T-A ***
28572224-A-G 26426077-A-G ***
28596723-A-T 26450576-A-T ***
24759317-T-C 22613170-T-C P3_b2 ***
58852260-C-G 56738611-G-C ***
24141830-G-A 21995683-G-A P3_b1 ***
18892459-C-T 16780579-C-T ***
21527693-A-C 19365807-A-C ***
21362663-G-T 19200777-G-T ***
21279329-C-A 19117443-C-A ***
21118826-A-G 18956940-A-G ***
21104441-A-G 18942555-A-G ***
20426035-A-T 18264149-A-T P5_Dst ***
19720675-G-T 17608795-G-T P5_Prx ***
19418518-A-G 17306638-A-G ***
19049488-T-A 16937608-T-A ***
18861768-A-C 16749888-A-C ***
21663279-A-G 19501393-A-G ***
18861756-A-G 16749876-A-G ***
18861741-G-T 16749861-G-T ***
18390135-G-T 16278255-G-T P6_Gap ***
18390128-A-G 16278248-A-G P6_Gap ***
18390123-T-C 16278243-T-C P6_Gap ***
18165585-T-C 16053705-T-C ***
17923727-A-G 15811847-A-G ***
17633793-C-A 15521913-C-A ***
17446940-C-A 15335060-C-A ***
21543102-G-T 19381216-G-T ***
22023304-C-A 19861418-C-A ***
24141806-G-A 21995659-G-A P3_b1 ***
22575174-A-G 20413288-A-G ***
23483252-T-A 21321366-T-A ***
23380546-T-A 21218660-T-A ***
23349250-T-A 21187364-T-A ***
23282283-A-G 21120397-A-G ***
23092658-C-A 20930772-C-A ***
22839556-G-A 20677670-G-A ***
22827361-T-A 20665475-T-A ***
22797951-C-T 20636065-C-T ***
22767491-T-A 20605605-T-A ***
22517933-A-T 20356047-A-T ***
22023307-C-A 19861421-C-A ***
22367207-C-T 20205321-C-T DYZ19 ***
22341563-G-T 20179677-G-T DYZ19 ***
22341539-A-T 20179653-A-T DYZ19 ***
22267314-T-A 20105428-T-A DYZ19 ***
22267266-C-T 20105380-C-T DYZ19 ***
22262454-G-C 20100568-G-C DYZ19 ***
22168017-C-A 20006131-C-A ***
22065205-C-G 19903319-C-G ***
22023316-A-G 19861430-A-G ***
23046287-G-T 20884401-G-T ***
58982529-G-C 56836382-G-C ***
58876588-T-A 56714283-A-T ***
14071348-ACCCGACTT-TCCTGAC 11950642-ACCCGACTT-TCCTGAC ***
17737618-CA-C 15625738-CA-C 14×A***
17301237-TCAAA-T 15189357-TCAAA-T ***
17027388-CA-GG 14915508-CA-GG ***
17006361-AGCG-CGCC 14894481-AGCG-CGCC ***
16071730-ATT-A 13959850-ATT-A 17×T***
15753178-C-CTT 13641298-C-CTT 20×T***
14570756-ATT-A 12458956-ATT-A 22×T***
14420787-CTT-C 12300062-CTT-C 18×T***
14056596-GAG-AAA 11935890-GAG-AAA ***
18723887-CTTT-C 16612007-CTTT-C 19×T***
13504496-CTC-TAA 11348820-CTC-TAA ***
13487741-CCT-AAC 11332065-CCT-AAC ***
13478370-GGAGTTTC-AGAATTTT 11322694-GGAGTTTC-AGAATTTT ***
13478288-CGCCT-AGCCA 11322612-CGCCT-AGCCA ***
13465345-GTT-CTC 11309669-GTT-CTC ***
13457738-TTC-CAA 11302062-TTC-CAA ***
13454817-C-CATTCA 11299141-C-CATTCA ***
13449080-CTGCAC-ATGAAT 11293404-CTGCAC-ATGAAT ***
18204981-TCTA-T 16093101-TCTA-T ***
21650139-A-AT 19488253-A-AT 8×T***
13449054-AATGAG-A 11293378-AATGAG-A ***
58838630-GATTG-CAGTC 56752237-CAATC-GACTG ***
58982505-TG-CA 56836358-TG-CA ***
58982194-AGCTG-TGCTC 56836047-AGCTG-TGCTC ***
58980293-TCACTC-CCAAGG 56834146-TCACTC-CCAAGG ***
58979989-TC-CT 56833842-TC-CT ***
58976435-CATTCC-TACTCT 56830288-CATTCC-TACTCT ***
58898379-CTTTC-TTTTA 56692488-GAAAG-TAAAA ***
58898358-CCATT-ACATG 56692509-AATGG-CATGT ***
58838645-GAATCCTTTCTATTG-CAGTCCGTTCCATTC 56752212-CAATAGAAAGGATTC-GAATGGAACGGACTG ***
58837619-CTCTATCTT-TTATATTAC 56753244-AAGATAGAG-GTAATATAA ***
22011557-CAA-C 19849671-CAA-C 21×A***
28686209-AGTCG-GGTCA 26540062-AGTCG-GGTCA ***
28503399-CAAAAAA-C 26357252-CAAAAAA-C 19×A***
23438879-CTTT-C 21276993-CTTT-C 21×T***
22996012-CAAA-C 20834126-CAAA-C 18×A***
22816366-CA-C 20654480-CA-C 29×A***
22367155-TGA-ATT 20205269-TGA-ATT DYZ19 ***
22267314-TAAAGC-AAAAAG 20105428-TAAAGC-AAAAAG DYZ19 ***
22234267-AAGAAATTCTG-TAGTAACTCTC 20072381-AAGAAATTCTG-TAGTAACTCTC DYZ19 ***
22048523-CA-C 19886637-CA-C 13×A***
13449062-CCACTGCACTT-C 11293386-CCACTGCACTT-C ***
13449040-CTG-TTC 11293364-CTG-TTC ***
58898358-C-A 56692513-G-T ***
58982591-A-T 56836444-A-T ***
17784121-C-CA 15672241-C-CA 15×A***
13279938-TGGAG-CGGAT 11124262-TGGAG-CGGAT ***
13447101-ACTTTC-CCTTTG 11291425-ACTTTC-CCTTTG ***
59020038-C-G 56873891-C-G ***
58985081-G-T 56838934-G-T ***
58985077-A-G 56838930-A-G ***
58985064-A-G 56838917-A-G ***
58982619-C-T 56836472-C-T ***
58982562-C-T 56836415-C-T ***
22871996-C-CA 20710110-C-CA 15×A***
58982551-A-T 56836404-A-T ***
58982547-T-A 56836400-T-A ***
17130418-T-G 15018538-T-G ***
58982496-A-T 56836349-A-T ***
58982481-A-T 56836334-A-T ***
58898383-C-A 56692488-G-T ***
58898379-C-T 56692492-G-A ***
58898368-C-T 56692503-G-A ***
58898362-T-G 56692509-A-C ***
7199181-CT-C 7331140-CT-C 17×T***
3501955-C-CA 3633914-C-CA 22×A***
13347687-GGCC-AGCT 11192011-GGCC-AGCT ***
4773481-C-CT 4905440-C-CT 25×T***
9942043-ATT-A 10104434-ATT-A 28×T***
9852984-A-AGGAG 10015375-A-AGGAG ***
8014907-TG-CA 8146866-TG-CA ***
7009187-CTTT-C 7141146-CTTT-C 19×T***
5905890-C-CAA 6037849-C-CAA 27×A***
5388261-T-TAA 5520220-T-TAA 18×A***
5350037-CTT-C 5481996-CTT-C 21×T***
4807249-T-TAA 4939208-T-TAA 23×A***
3778577-GA-G 3910536-GA-G 12×A***
28596399-GT-G 26450252-GT-G 16×T***
3256138-A-ATT 3388097-A-ATT 15×T***
3253168-TTC-T 3385127-TTC-T ***
2950223-GTATA-G 3082182-GTATA-G 10×TA***
5400468-CTT-C 5532427-CTT-C 19×T***
13487754-CA-AC 11332078-CA-AC ***
4221231-TAA-T 4353190-TAA-T 19×A***
8403272-CAAAAA-C 8535231-CAAAAA-C 28×A***
14219774-AA-G 12099068-AA-G ***
4583052-T-TA 4715011-T-TA ***
17191281-G-A 15079401-G-A ***
15903472-A-G 13791592-A-G ***
17006385-T-G 14894505-T-G ***
13478300-C-T 11322624-C-T ***
22227931-C-A 20066045-C-A DYZ19 ***
58829291-G-C 56761580-C-G ***
15566817-GAA-G 13454937-GAA-G 22×A***
58979827-G-T 56833680-G-T ***
19052414-CA-C 16940534-CA-C 24×A***
4663190-TA-T 4795149-TA-T 16×A***
13487724-AG-GC 11332048-AG-GC ***
7155780-TA-T 7287739-TA-T 14×A***
14795080-CT-C 12683151-CT-C 24×T***
6699020-A-T 6830979-A-T 24×T***
58837591-G-A 56753280-C-T ***
58985049-A-G 56838902-A-G ***
13974693-C-CT 11853987-C-CT 17×T***
28606867-CT-C 26460720-CT-C 13×T***
4678058-G-GT 4810017-G-GT 15×T***
22227923-C-T 20066037-C-T DYZ19 ***
58986330-CACTG-GACTT 56840183-CACTG-GACTT ***
58986369-T-G 56840222-T-G ***
19189421-A-G 17077541-A-G ***
4817201-C-T 4949160-C-T ***
58837627-T-C 56753244-A-G ***
2673713-G-T 2805672-G-T ***
4284327-T-A 4416286-T-A ***
4264884-A-C 4396843-A-C ***
4249208-C-A 4381167-C-A ***
4058107-C-T 4190066-C-T ***
3995944-T-G 4127903-T-G ***
3735864-G-A 3867823-G-A ***
3446642-A-T 3578601-A-T ***
3062148-C-A 3194107-C-A ***
2668066-C-G 2800025-C-G ***
13487754-C-A 11332078-C-A ***
2663719-G-C 2795678-G-C ***
58869429-T-C 56721442-A-G ***
5065087-C-T 5197046-C-T ***
13579655-A-G 11423979-A-G ***
3066506-T-C 3198465-T-C ***
13487760-C-T 11332084-C-T ***
13457757-A-T 11302081-A-T ***
13453875-T-C 11298199-T-C ***
15122118-C-T 13010205-C-T ***
13845538-GTCA-ATGG 11724832-GTCA-ATGG ***
22342527-C-G 20180641-C-G DYZ19 ***
4376145-A-C 4508104-A-C ***
58884333-C-A 56706538-G-T ***
13449351-C-CCTAAA 11293675-C-CCTAAA ***
13354609-C-A 11198933-C-A ***
13275788-G-A 11120112-G-A ***
5225292-GTA-G 5357251-GTA-G 12×TA***
3444068-T-C 3576027-T-C ***
3062015-T-A 3193974-T-A ***
19389717-TA-T 17277837-TA-T 17×A***
3695724-CA-C 3827683-CA-C 14×A***
22267318-G-A 20105432-G-A DYZ19 ***
13494335-A-T 11338659-A-T ***
27461936-T-TTG 25315789-T-TTG P1_Y2 27×TG***
14510449-G-GA 12398654-G-GA 21×A***
7165306-G-GT 7297265-G-GT 20×T***
19604809-CAA-C 17492929-CAA-C P5_Prx 19×A***
22577951-G-GA 20416065-G-GA 24×A***
3720173-ACCC-CTCT 3852132-ACCC-CTCT ***
58869182-G-A 56721689-C-T ***
58879927-TC-T 56710942-CG-C ***
13494322-C-T 11338646-C-T ***
13504498-C-A 11348822-C-A 12×A***
59032602-A-C 56886455-A-C ***
13494487-C-A 11338811-C-A ***
59028583-C-A 56882436-C-A ***
59027752-G-A 56881605-G-A ***
59005243-A-G 56859096-A-G ***
58991871-G-A 56845724-G-A ***
58981677-A-G 56835530-A-G ***
15839824-A-G 13727944-A-G ***
13504497-T-A 11348821-T-A ***
13504496-C-T 11348820-C-T ***
13423259-T-C 11267583-T-C ***
58997561-C-A 56851414-C-A ***
13354716-T-C 11199040-T-C ***
9774442-T-C 9936833-T-C 10×TTTC***
9774441-C-T 9936832-C-T ***
4651822-T-C 4783781-T-C Y1149 ***
3732950-TTC-T 3864909-TTC-T ***
7320994-G-GAC 7452953-G-GAC 9×AC***
3394337-C-CT 3526296-C-CT 21×T***
20888588-TA-T 18726702-TA-T P4_Dst 15×A***
18255888-T-TAA 16144008-T-TAA 22×A***
4351011-G-A 4482970-G-A ***
4484044-C-A 4616003-C-A ***
17006364-G-C 14894484-G-C ***
13898451-C-G 11777745-C-G ***
14501734-A-G 12389939-A-G ***
14221522-C-A 12100816-C-A ***
14219775-A-G 12099069-A-G ***
14196035-G-A 12075329-G-A ***
14056606-G-A 11935900-G-A ***
14056596-G-A 11935890-G-A ***
13977932-C-T 11857226-C-T ***
13939939-G-A 11819233-G-A ***
13726401-A-G 11570725-A-G ***
14510108-G-A 12398313-G-A ***
13713580-T-C 11557904-T-C ***
13587614-T-C 11431938-T-C ***
13529915-C-A 11374239-C-A ***
13478405-C-A 11322729-C-A ***
13478377-C-T 11322701-C-T ***
13478373-G-A 11322697-G-A ***
13478292-T-A 11322616-T-A ***
13478279-G-A 11322603-G-A ***
14501736-C-T 12389941-C-T ***
14552675-G-T 12440876-G-T ***
13468095-G-T 11312419-G-T ***
13585053-CA-C 11429377-CA-C 19×A***
17006361-A-C 14894481-A-C ***
16921331-G-A 14809451-G-A ***
16889916-T-G 14778036-T-G ***
16834644-G-T 14722764-G-T ***
16598958-G-A 14487078-G-A ***
16458775-A-G 14346895-A-G ***
15903482-C-T 13791602-C-T ***
15903480-G-A 13791600-G-A ***
15884240-T-G 13772360-T-G ***
14704860-G-T 12592926-G-T ***
15687741-T-C 13575861-T-C ***
15474830-G-T 13362950-G-T ***
15302412-G-T 13190511-G-T ***
15148911-C-A 13036998-C-A ***
15126641-T-C 13014728-T-C ***
15122103-G-T 13010190-G-T ***
14931760-C-T 12819825-C-T ***
14931758-C-T 12819823-C-T ***
14898795-C-G 12786862-C-G ***
13468097-A-G 11312421-A-G ***
13465347-T-C 11309671-T-C ***
4508953-G-T 4640912-G-T ***
5088744-A-G 5220703-A-G ***
6750474-A-G 6882433-A-G ***
6013195-A-C 6145154-A-C ***
5712538-G-A 5844497-G-A ***
5603301-C-A 5735260-C-A ***
5511814-A-C 5643773-A-C ***
5369635-T-A 5501594-T-A ***
5121223-C-T 5253182-C-T ***
5088767-T-C 5220726-T-C ***
5088743-C-T 5220702-C-T ***
7107130-G-T 7239089-G-T ***
5088742-A-G 5220701-A-G ***
5088741-A-T 5220700-A-T ***
5088732-A-G 5220691-A-G ***
5032480-T-A 5164439-T-A ***
5007928-A-G 5139887-A-G ***
4965466-A-T 5097425-A-T ***
4901612-A-G 5033571-A-G ***
4803672-G-T 4935631-G-T ***
4552829-C-A 4684788-C-A ***
6751287-C-T 6883246-C-T ***
7313552-C-A 7445511-C-A ***
13465345-G-C 11309669-G-C ***
13449075-C-T 11293399-C-T ***
13457797-A-C 11302121-A-C ***
13457784-T-A 11302108-T-A ***
13457740-C-A 11302064-C-A ***
13457738-T-C 11302062-T-C ***
13455921-T-C 11300245-T-C ***
13453907-C-T 11298231-C-T ***
13453880-T-C 11298204-T-C ***
13453250-A-C 11297574-A-C ***
13125676-A-G 10615162-A-G ***
7575879-G-A 7707838-G-A ***
10059268-C-A 10221659-C-A ***
9915204-G-A 10077595-G-A ***
9781756-T-A 9944147-T-A ***
9028779-T-A 9191170-T-A ***
8151836-T-A 8283795-T-A ***
8014914-A-C 8146873-A-C ***
7895905-G-A 8027864-G-A ***
7852714-G-T 7984673-G-T ***
7775588-T-A 7907547-T-A ***
58982547-TCCGA-ACCAT 56836400-TCCGA-ACCAT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: QZZ5C16783031101157678248264
Used in age calculations16783031101157678248264
Counts of SNPs44
Variant counts last updated 2017-12-16 19:34:31.



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