Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > ZS312 > Z262 > M167 > Z264 > Z205 > ~22224168-A-C > Z206/S235 > Z208/S362 > Z207/S251 > CTS9762 > CTS4299 > FGC48569 > FGC48555

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
UEJFD
Manual
Edits
6796585-G-A 6928544-G-A FGC48552 YY+
14356114-G-A 12235409-G-A FGC48567 YY+
16756060-G-T 14644180-G-T FGC48573 YY+
16044092-T-C 13932212-T-C FGC48571 YY+
15997891-A-G 13886011-A-G FGC48570 YY+
6787084-C-T 6919043-C-T FGC48551 YY+
17491181-T-C 15379301-T-C FGC48576 YY+
6947860-G-A 7079819-G-A FGC48554 YY+
4467650-A-T 4599609-A-T FGC48548 +
7805264-A-T 7937223-A-T FGC48556 YY+
7822740-A-G 7954699-A-G FGC48557 YY+
8072809-G-C 8204768-G-C FGC48558 Y+
8730941-A-G 8862900-A-G FGC48559 YY+
8821837-T-G 8953796-T-G FGC48561 YY+
14802558-A-G 12690629-A-G FGC48568 YY+
9648405-C-T 9810796-C-T FGC48562 IR3_Prx +
6082218-G-A 6214177-G-A FGC48550 +
24454573-C-G 22308426-C-G FGC48586 Y+
3730232-G-A 3862191-G-A FGC48547 +
19297240-A-G 17185360-A-G FGC48580 Y+
3700118-A-T 3832077-A-T FGC34780 +
21880880-C-A 19718994-C-A ZS9494 YY+
3031888-C-A 3163847-C-A FGC48546 +
22061001-G-A 19899115-G-A FGC48581 YY+
13822764-A-T 11702058-A-T FGC48563 +
3025933-A-G 3157892-A-G FGC48545 +
18946032-G-A 16834152-G-A FGC48578 YY+
18884891-C-T 16773011-C-T ZS10291 YY+
18163797-A-T 16051917-A-T FGC48577 YY+
23594445-C-G 21432559-C-G FGC48584 YY+
2888786-G-C 3020745-G-C FGC48544 YY*
5783891-C-A 5915850-C-A FGC48549 *
23465087-C-T 21303201-C-T FGC48583 Y*
6010439-T-G 6142398-T-G **
28432356-A-G 26286209-A-G P1_gr2 **
13462511-G-A 11306835-G-A **
13703712-G-A 11548036-G-A **
13704054-G-T 11548378-G-T **
13704529-C-G 11548853-C-G **
26179515-G-A 24033368-G-A P1_Y1 **
10020809-C-T 10183200-C-T **
13923306-G-A 11802600-G-A **
3604492-A-T 3736451-A-T **
17124740-C-T 15012860-C-T **
25565712-A-C 23419565-A-C P1_gr1 **
28784908-A-G 26638761-A-G **
7712531-T-C 7844490-T-C **
17618732-C-A 15506852-C-A **
8218013-T-TTTTCTTTCTTTC 8349972-T-TTTTCTTTCTTTC 15×TTTC**
5130732-T-C 5262691-T-C **
6984784-TTAAAG-T 7116743-TTAAAG-T **
13856303-A-AAATGGAATGGAATGGAATGGAATGGAATGG 11735597-A-AAATGGAATGGAATGGAATGGAATGGAATGG 15×AATGG**
59024398-G-GCACACACA 56878251-G-GCACACACA **
13471181-G-T 11315505-G-T **
59018676-C-T 56872529-C-T **
15479144-TA-T 13367264-TA-T **
22779921-G-T 20618035-G-T **
5962109-C-CATAT 6094068-C-CATAT 20×AT**
19437788-G-A 17325908-G-A **
16533402-AATATATGTATATTATCAATACAT-A 14421522-AATATATGTATATTATCAATACAT-A **
22319298-G-C 20157412-G-C DYZ19 **
21999609-A-G 19837723-A-G **
22467550-G-A 20305664-G-A DYZ19 **
23357838-C-T 21195952-C-T **
22429248-A-C 20267362-A-C DYZ19 ***
22427221-G-A 20265335-G-A DYZ19 ***
22325277-G-A 20163391-G-A DYZ19 ***
22325289-A-T 20163403-A-T DYZ19 ***
25505182-G-A 23359035-G-A P1_gr1 ***
22348398-C-A 20186512-C-A DYZ19 ***
22466220-A-C 20304334-A-C DYZ19 ***
25505148-T-G 23359001-T-G P1_gr1 ***
25504479-C-A 23358332-C-A P1_gr1 ***
25497063-A-C 23350916-A-C P2_r2 ***
25151745-T-G 23005598-T-G g1 ***
25379519-G-A 23233372-G-A P2_r2 ***
22459949-A-T 20298063-A-T DYZ19 ***
25334990-A-G 23188843-A-G P2_r1 ***
25145692-G-T 22999545-G-T g1 ***
22429333-G-C 20267447-G-C DYZ19 ***
25246490-A-T 23100343-A-T P2_r1 ***
25245805-T-A 23099658-T-A P2_r1 ***
25182094-T-C 23035947-T-C g1 10×A***
25164770-T-C 23018623-T-C g1 ***
22429245-A-G 20267359-A-G DYZ19 ***
23425272-A-G 21263386-A-G ***
25604484-G-T 23458337-G-T P1_gr1 ***
26248180-C-T 24102033-C-T P1_Y1 ***
26552816-T-C 24406669-T-C P1_g2 ***
26516776-G-T 24370629-G-T P1_Y1 ***
26467782-T-A 24321635-T-A P1_Y1 ***
22276845-T-C 20114959-T-C DYZ19 ***
26419782-A-G 24273635-A-G P1_Y1 ***
26387090-G-A 24240943-G-A P1_Y1 ***
26358373-T-C 24212226-T-C P1_Y1 ***
26344563-G-T 24198416-G-T P1_Y1 ***
26344481-C-A 24198334-C-A P1_Y1 ***
22276850-G-T 20114964-G-T DYZ19 ***
25688011-C-A 23541864-C-A P1_b3 ***
22286278-C-T 20124392-C-T DYZ19 ***
22292767-C-T 20130881-C-T DYZ19 ***
26243042-C-T 24096895-C-T P1_Y1 ***
22307548-C-G 20145662-C-G DYZ19 ***
26123173-G-T 23977026-G-T P1_Y1 ***
25812328-T-G 23666181-T-G P1_b3 ***
25723698-C-A 23577551-C-A P1_b3 ***
22313689-G-T 20151803-G-T DYZ19 ***
25717112-G-A 23570965-G-A P1_b3 ***
25110687-A-T 22964540-A-T g1 ***
22316796-T-C 20154910-T-C DYZ19 ***
25008407-G-T 22862260-G-T g1 ***
22471310-T-C 20309424-T-C DYZ19 ***
24171268-A-C 22025121-A-C P3_b1 ***
22778554-G-T 20616668-G-T ***
26597389-A-T 24451242-A-T P1_g2 ***
24486092-A-T 22339945-A-T ***
22838861-C-T 20676975-C-T ***
24341393-A-G 22195246-A-G P3_t1 ***
24332016-T-G 22185869-T-G P3_t1 ***
24204995-A-T 22058848-A-T P3_b1 ***
22854116-C-T 20692230-C-T ***
24181989-C-T 22035842-C-T P3_b1 ***
22982378-A-G 20820492-A-G ***
22666189-G-A 20504303-G-A ***
23106439-C-A 20944553-C-A ***
24171248-C-T 22025101-C-T P3_b1 ***
24150032-C-T 22003885-C-T P3_b1 ***
24121238-T-A 21975091-T-A P3_b1 ***
24081735-C-A 21935588-C-A P3_b1 ***
23107643-C-T 20945757-C-T ***
24045434-C-A 21899287-C-A ***
24044497-T-C 21898350-T-C ***
23728463-C-T 21566577-C-T ***
23601649-T-C 21439763-T-C ***
22713427-T-G 20551541-T-G ***
24588727-T-G 22442580-T-G P3_t2 ***
25095575-G-A 22949428-G-A g1 ***
24768253-C-G 22622106-C-G P3_b2 ***
25042845-T-C 22896698-T-C g1 ***
22472804-G-C 20310918-G-C DYZ19 ***
22472822-G-C 20310936-G-C BY31886 DYZ19 ***
22476654-A-C 20314768-A-C DYZ19 ***
24972279-A-T 22826132-A-T g1 ***
24972268-T-G 22826121-T-G g1 ***
22484062-T-C 20322176-T-C DYZ19 ***
22485365-G-A 20323479-G-A DYZ19 ***
24932432-G-A 22786285-G-A g1 ***
24870268-T-A 22724121-T-A P3_b2 ***
24750549-C-T 22604402-C-T P3_b2 ***
24652302-A-G 22506155-A-G P3_b2 ***
24745583-T-G 22599436-T-G P3_b2 ***
22486637-T-A 20324751-T-A BY30207 DYZ19 ***
24707133-A-T 22560986-A-T P3_b2 ***
22486780-C-A 20324894-C-A DYZ19 ***
24671539-G-A 22525392-G-A P3_b2 ***
24658631-G-C 22512484-G-C P3_b2 ***
24658578-A-T 22512431-A-T P3_b2 ***
22487512-G-A 20325626-G-A DYZ19 ***
22509286-G-T 20347400-G-T DYZ19 ***
22544675-G-T 20382789-G-T ***
24491226-G-A 22345079-G-A ***
28022788-C-G 25876641-C-G P1_Y2 ***
26632171-G-A 24486024-G-A P1_g2 ***
13856306-T-TGGAATGGAATGGAATGGAATGGAATGGAAA 11735600-T-TGGAATGGAATGGAATGGAATGGAATGGAAA ***
22237712-ACT-GTA 20075826-ACT-GTA DYZ19 ***
22229325-CT-GC 20067439-CT-GC DYZ19 ***
21033701-AAC-A 18871815-AAC-A ***
20655022-ATGTGTGTGTGTGTGTGTGTG-A 18493136-ATGTGTGTGTGTGTGTGTGTG-A P4_Prx 23×TG***
19042178-GCAA-G 16930298-GCAA-G ***
17794260-C-CTTTT 15682380-C-CTTTT ***
15839959-TAAAAAA-T 13728079-TAAAAAA-T 17×A***
15015255-CTTTTTT-C 12903343-CTTTTTTT-C 24×T***
14496317-A-ATGGATGGG 12384522-A-ATGGATGGG ***
14418160-A-ATCTG ***
14379586-G-GATAA 12258882-G-GATAA ***
13869351-AATG-GATA 11748645-AATG-GATA ***
13869280-GAAT-AAAA 11748574-GAAT-AAAA ***
13845541-A-AAATGGAATGGAATGGAATGGAATGGAATGGAACGG 11724835-A-AAATGGAATGGAATGGAATGGAATGGAATGGAACGG 8×AATGG***
22241711-AA-CC 20079825-AA-CC DYZ19 ***
13725468-TGGAAT-AGAAAA 11569792-TGGAAT-AGAAAA ***
13725450-GAATGG-AAAAGA 11569774-GAATGG-AAAAGA ***
13707161-GGT-TGC 11551485-GGT-TGC ***
13705322-CATGT-AATGG 11549646-CATGT-AATGG ***
13688222-GCATGGAATGGAATGC-G 11532546-GCATGGAATGGAATGC-G ***
13486814-TGG-ACA 11331138-TGG-ACA ***
13468177-ACCC-CCCT 11312501-ACCC-CCCT ***
13466380-CAGAG-TAGAT 11310704-CAGAG-TAGAT ***
13466300-GGT-CGG 11310624-GGT-CGG ***
13457992-GTTCCGTTC-CTTTTGTAA 11302316-GTTCCGTTC-CTTTTGTAA ***
13457985-CCG-GCA 11302309-CCG-GCA ***
13453816-TCCA-CCCT 11298140-TCCA-CCCT ***
13450367-CCCATTT-GCCTTTC 11294691-CCCATTT-GCCTTTC ***
22237724-AGCTTT-CACGTC 20075838-AGCTTT-CACGTC DYZ19 ***
22427184-ATGAATGATGC-CTTAAAGTTGT 20265298-ATGAATGATGC-CTTAAAGTTGT DYZ19 ***
13446801-CGTGCCATTCCATTCCATTCCATT-TTTG 11291125-CGTGCCATTCCATTCCATTCCATT-TTTG ***
58979422-C-CCACCA 56833275-C-CCACCA ***
58994916-AATTTTGACAAATC-TATAGTGAAATATA 56848769-AATTTTGACAAATC-TATAGTGAAATATA ***
58983160-CTCCACT-ATCCGC 56837013-CTCCACT-ATCCGC ***
58982953-GTC-CTT 56836806-GTC-CTT ***
58982890-AA-CC 56836743-AA-CC ***
58982873-TTGCATTCTAC-T 56836726-TTGCATTCTAC-T ***
58982847-AGCTCA-CGTTCC 56836700-AGCTCA-CGTTCC ***
58982812-CTGTCACCAA-TTGAAACCCT 56836665-CTGTCACCAA-TTGAAACCCT ***
58982794-TTTAG-CCTCA 56836647-TTTAG-CCTCA ***
58982783-CC-AA 56836636-CC-AA ***
58982060-CCACTCAA-TCCCTCCG 56835913-CCACTCAA-TCCCTCCG ***
58980604-CCATTCCCTTCCATTA-C 56834457-CCATTCCCTTCCATTA-C ***
58979942-GGCAC-AGCA 56833795-GGCAC-AGCA ***
58979924-CCCAG-ACCAT 56833777-CCCAG-ACCAT ***
58979237-ATA-TTT 56833090-ATA-TTT ***
22429245-AGTA-GGTC 20267359-AGTA-GGTC DYZ19 ***
58979225-TTCTA-CTGCT 56833078-TTCTA-CTGCT ***
58979209-GTTC-ATTA 56833062-GTTC-ATTA ***
58979167-TAT-AGG 56833020-TAT-AGG ***
58979155-GCTGG-TCGGA 56833008-GCTGG-TCGGA ***
58979141-ACTCTGTCAC-TCTGCGTCAA 56832994-ACTCTGTCAC-TCTGCGTCAA ***
58975873-AT-CA 56829726-AT-CA ***
58975853-CAATCCAC-TACTTCTG 56829706-CAATCCAC-TACTTCTG ***
58975807-GCACT-AC 56829660-GCACT-AC ***
58975804-A-AAGC 56829657-A-AAGC ***
58905373-GTCGA-TTCGG 56685494-TCGAC-CCGAA ***
58884052-ACG-TCA 56706817-CGT-TGA ***
27127598-TTTTATTTCTTTCTTTC-T 24981451-TTTTATTTCTTTCTTTC-T P1_g3 ***
22477922-CTGTT-ATGGG 20316036-CTGTT-ATGGG DYZ19 ***
13448766-CC-TT 11293090-CC-TT ***
13446672-C-CTCCAT 11290996-C-CTCCAT 5×TCCAT***
26671228-G-C 24525081-G-C P1_g2 ***
28022815-G-T 25876668-G-T P1_Y2 ***
58908349-C-G 56682522-G-C ***
58905467-A-T 56685404-T-A ***
58905117-A-T 56685754-T-A ***
58884052-A-T 56706819-T-A ***
58875324-C-A 56715547-G-T ***
58875274-C-T 56715597-G-A ***
28753590-C-A 26607443-C-A ***
28333098-C-A 26186951-C-A P1_b4 ***
28263286-T-G 26117139-T-G P1_b4 ***
28239179-A-C 26093032-A-C P1_b4 ***
28237259-T-C 26091112-T-C P1_b4 ***
28123042-T-C 25976895-T-C P1_b4 ***
28122260-C-T 25976113-C-T P1_b4 ***
22266638-G-A 20104752-G-A DYZ19 ***
58910335-T-G 56680536-A-C ***
27860436-A-T 25714289-A-T P1_Y2 ***
27760265-A-C 25614118-A-C P1_Y2 ***
27714138-T-C 25567991-T-C P1_Y2 ***
27635842-C-T 25489695-C-T P1_Y2 ***
27633230-G-A 25487083-G-A P1_Y2 ***
27596138-G-A 25449991-G-A P1_Y2 ***
27534695-C-A 25388548-C-A P1_Y2 ***
27505494-A-G 25359347-A-G P1_Y2 ***
27332399-A-C 25186252-A-C P1_g3 ***
27328936-C-T 25182789-C-T P1_g3 ***
26971125-G-T 24824978-G-T P1_r4 ***
26736221-T-G 24590074-T-G P1_g2 ***
26733714-T-C 24587567-T-C P1_g2 ***
58910312-C-T 56680559-G-A ***
58910401-T-C 56680470-A-G ***
13196193-AAA-CAT 11040517-AAA-CAT ***
59007576-T-A 56861429-T-A ***
9854343-CTTTTTTTT-C 10016734-CTTTTTTTT-C 19×T***
9218522-TTGTGTGTG-T 9380913-TTGTGTGTG-T 12×TG***
6493953-CAAAAAA-C 6625912-CAAAAAA-C 19×A***
6347776-A-AGGAAGGAAGGAG 6479735-A-AGGAAGGAAGGAG ***
6286970-CACACAA-C 6418929-CACACAA-C IR3_Dst ***
5792832-G-GA 5924791-G-GA ***
3539405-ACTT-A 3671364-ACTT-A ***
2950256-TATATATATATCACATATATACATATATAAGTATATATATGGC-T 3082215-TATATATATATCACATATATACATATATAAGTATATATATGGC-T ***
16364058-CTATATATATATA-C 14252178-CTATATATATATA-C 27×TA***
4618500-C-CA 4750459-C-CA 13×A***
59013608-GTATA-G 56867461-GTATA-G 15×TA***
59021457-G-T 56875310-G-T ***
59011964-G-T 56865817-G-T ***
58982849-C-T 56836702-C-T ***
58979159-G-A 56833012-G-A ***
58982847-A-C 56836700-A-C ***
58982816-C-A 56836669-C-A ***
58982815-T-A 56836668-T-A ***
58982812-C-T 56836665-C-T ***
58982795-T-C 56836648-T-C ***
58982784-C-A 56836637-C-A ***
58982783-C-A 56836636-C-A ***
58981825-C-T 56835678-C-T ***
58979942-G-C 56833795-G-C ***
58979904-G-C 56833757-G-C ***
58979879-G-A 56833732-G-A ***
58979878-T-G 56833731-T-G ***
58979399-A-T 56833252-A-T ***
22267869-T-C 20105983-T-C DYZ19 ***
22446152-A-T 20284266-A-T Z18134Z18135 DYZ19 ***
22241699-T-A 20079813-T-A DYZ19 ***
6106033-C-G 6237992-C-G ***
6341242-G-A 6473201-G-A IR3_Dst ***
6337125-C-T 6469084-C-T IR3_Dst ***
6335917-C-T 6467876-C-T IR3_Dst ***
6311784-G-A 6443743-G-A IR3_Dst ***
6309448-G-A 6441407-G-A IR3_Dst ***
6296769-T-G 6428728-T-G IR3_Dst ***
6296709-T-A 6428668-T-A IR3_Dst ***
6260518-A-G 6392477-A-G IR3_Dst ***
6214118-T-A 6346077-T-A IR3_Dst ***
6194766-A-G 6326725-A-G IR3_Dst ***
6170721-A-T 6302680-A-T IR3_Dst ***
6157432-T-C 6289391-T-C IR3_Dst ***
5624213-T-A 5756172-T-A ***
6637919-G-T 6769878-G-T ***
5255003-C-T 5386962-C-T ***
5254914-C-T 5386873-C-T ***
5254911-A-T 5386870-A-T ***
5088717-G-T 5220676-G-T ***
4949452-T-A 5081411-T-A ***
4841787-A-C 4973746-A-C ***
4727528-A-C 4859487-A-C ***
4269183-G-T 4401142-G-T ***
4192819-C-A 4324778-C-A ***
4123492-A-G 4255451-A-G ***
4117965-A-G 4249924-A-G ***
3543112-A-T 3675071-A-T ***
6392526-T-A 6524485-T-A ***
6808208-C-G 6940167-C-G ***
2775105-A-C 2907064-A-C ***
9605823-G-T 9768214-G-T IR3_Prx ***
10046303-A-G 10208694-A-G ***
10032342-A-T 10194733-A-T ***
9990351-G-A 10152742-G-A ***
9990302-C-T 10152693-C-T ***
9922767-A-G 10085158-A-G ***
9723357-T-C 9885748-T-C IR3_Prx ***
9677751-A-G 9840142-A-G IR3_Prx ***
9677727-C-T 9840118-C-T IR3_Prx ***
9677723-G-T 9840114-G-T IR3_Prx ***
9677714-A-G 9840105-A-G IR3_Prx ***
9677713-T-C 9840104-T-C IR3_Prx ***
9611141-G-T 9773532-G-T IR3_Prx ***
9559820-C-A 9722211-C-A IR3_Prx ***
7016168-A-T 7148127-A-T ***
9501351-A-T 9663742-A-T ***
9410746-C-T 9573137-C-T ***
9408944-G-T 9571335-G-T ***
9322593-G-T 9484984-G-T ***
9238701-C-T 9401092-C-T ***
9199416-G-A 9361807-G-A ***
9199230-C-T 9361621-C-T ***
9199228-C-T 9361619-C-T ***
9191214-G-A 9353605-G-A ***
8724229-T-A 8856188-T-A ***
7712898-A-G 7844857-A-G ***
7275391-G-T 7407350-G-T ***
3334269-C-A 3466228-C-A ***
2758810-T-A 2890769-T-A ***
13222056-A-G 11066380-A-G ***
22255778-T-C 20093892-T-C DYZ19 ***
22226046-G-A 20064160-G-A DYZ19 ***
7545013-G-GC 7676972-G-GC ***
28022799-T-G 25876652-T-G P1_Y2 ***
13471806-AC-GT 11316130-AC-GT ***
13733865-AC-TG 11578189-AC-TG ***
59021219-T-G 56875072-T-G ***
59017244-C-T 56871097-C-T ***
59014682-AAT-A 56868535-AAT-A ***
58866388-C-T 56724483-G-A ***
22509228-T-A 20347342-T-A DYZ19 ***
22509170-C-T 20347284-C-T DYZ19 ***
22479109-G-C 20317223-G-C DYZ19 ***
16210731-T-A 14098851-T-A ***
58985056-TCTTG-CCTTC 56838909-TCTTG-CCTTC ***
9824984-TAC-T 9987375-TAC-T 9×AC***
4192995-G-T 4324954-G-T ***
20500942-GA-G 18339056-GA-G P5_Dst 15×A***
26433572-C-T 24287425-C-T P1_Y1 19×T***
22217976-A-T 20056090-A-T DYZ19 ***
8125062-GAGAGA-G 8257021-GAGAGA-G 12×AGAGA***
13725379-A-T 11569703-A-T ***
58844610-C-G 56746261-G-C ***
13263371-CAGC-TAGG 11107695-CAGC-TAGG ***
58979877-C-T 56833730-C-T ***
22237714-T-A 20075828-T-A DYZ19 ***
22237713-C-T 20075827-C-T DYZ19 ***
58985050-T-C 56838903-T-C ***
13486740-CATT-TATC 11331064-CATT-TATC ***
2670648-T-C 2802607-T-C ***
25505177-A-G 23359030-A-G P1_gr1 ***
9922776-T-A 10085167-T-A ***
13486708-T-A 11331032-T-A ***
5963813-C-T 6095772-C-T ***
13340513-C-A 11184837-C-A ***
13340514-A-G 11184838-A-G ***
22237747-T-G 20075861-T-G DYZ19 ***
22307194-T-G 20145308-T-G DYZ19 ***
22429300-G-C 20267414-G-C DYZ19 ***
9204506-C-G 9366897-C-G ***
22486304-T-G 20324418-T-G DYZ19 ***
58996610-G-C 56850463-G-C ***
22713715-A-C 20551829-A-C ***
26354179-T-G 24208032-T-G P1_Y1 ***
28442556-C-A 26296409-C-A P1_gr2 16×A***
22487503-T-G 20325617-T-G DYZ19 ***
22285981-G-T 20124095-G-T DYZ19 ***
28795712-A-AG 26649565-A-AG ***
13447596-TTGC-CTGT 11291920-TTGC-CTGT ***
13447563-CCATT-GCATG 11291887-CCATT-GCATG ***
58979873-T-C 56833726-T-C ***
22473088-A-C 20311202-A-C DYZ19 ***
22471309-C-A 20309423-C-A DYZ19 ***
15157856-GTC-G 13045943-GTC-G ***
13466413-C-A 11310737-C-A ***
26539507-T-A 24393360-T-A P1_g2 ***
15037755-A-AGG 12925845-A-AGG ***
17086602-C-CAT 14974722-C-CAT 22×AT***
10094226-C-T 10256617-C-T ***
13451239-T-A 11295563-T-A ***
22237727-T-G 20075841-T-G DYZ19 ***
18454807-G-T 16342927-G-T P6_Dst ***
19604770-G-A 17492890-G-A P5_Prx ***
19554801-T-G 17442921-T-G ***
19428801-T-C 17316921-T-C ***
19325622-A-G 17213742-A-G ***
19019300-T-C 16907420-T-C ***
18932191-T-C 16820311-T-C ***
18702890-G-T 16591010-G-T ***
18647638-G-T 16535758-G-T ***
18577612-T-A 16465732-T-A ***
18518347-G-T 16406467-G-T P6_Dst ***
18518322-A-T 16406442-A-T P6_Dst ***
18468873-G-T 16356993-G-T P6_Dst ***
18366926-G-A 16255046-G-A P6_Prx ***
19829345-T-C 17717465-T-C P5_Prx ***
18307645-A-C 16195765-A-C P6_Prx ***
18058654-C-A 15946774-C-A ***
17849042-C-T 15737162-C-T ***
17849041-A-G 15737161-A-G ***
17849024-A-C 15737144-A-C ***
17849013-G-A 15737133-G-A ***
17849000-C-T 15737120-C-T ***
17825918-G-T 15714038-G-T ***
17824338-C-A 15712458-C-A ***
17728478-G-A 15616598-G-A ***
17628057-T-A 15516177-T-A ***
17545673-G-T 15433793-G-T ***
19759541-T-C 17647661-T-C P5_Prx ***
19848189-T-A 17736309-T-A P5_Prx ***
17483335-G-A 15371455-G-A ***
21416856-T-C 19254970-T-C ***
22237725-G-A 20075839-G-A DYZ19 ***
22237724-A-C 20075838-A-C DYZ19 ***
22227639-A-T 20065753-A-T DYZ19 ***
22226121-G-A 20064235-G-A DYZ19 ***
22224606-C-T 20062720-C-T DYZ19 ***
22218807-C-T 20056921-C-T DYZ19 ***
22217954-C-T 20056068-C-T DYZ19 ***
21708722-A-G 19546836-A-G ***
21708720-C-T 19546834-C-T ***
21630136-T-C 19468250-T-C ***
21475222-T-G 19313336-T-G ***
21475130-A-T 19313244-A-T ***
21328792-C-A 19166906-C-A ***
20023571-T-C 17911691-T-C P5_Prx ***
21325534-A-G 19163648-A-G ***
21120164-A-G 18958278-A-G ***
20985694-T-G 18823808-T-G P4_Dst ***
20875262-C-A 18713376-C-A P4_Dst ***
20748260-A-G 18586374-A-G P4_Prx ***
22237712-A-G 20075826-A-G DYZ19 ***
20604302-T-A 18442416-T-A P5_Dst ***
20455191-C-T 18293305-C-T P5_Dst ***
20420167-G-T 18258281-G-T P5_Dst ***
20212643-T-C 18050757-T-C P5_Dst ***
20105820-C-T 17993940-C-T P5_Dst ***
20104892-T-C 17993012-T-C P5_Dst ***
17523567-G-A 15411687-G-A ***
17270479-T-C 15158599-T-C ***
13453816-T-C 11298140-T-C ***
13481631-G-C 11325955-G-C ***
13728050-G-A 11572374-G-A ***
13725501-A-T 11569825-A-T ***
13725421-A-C 11569745-A-C ***
13705276-G-A 11549600-G-A ***
13699555-C-G 11543879-C-G ***
13611435-C-T 11455759-C-T ***
13599383-A-G 11443707-A-G ***
13489752-C-A 11334076-C-A ***
13489746-C-T 11334070-C-T ***
13489745-T-G 11334069-T-G ***
13489728-T-A 11334052-T-A ***
13489546-C-T 11333870-C-T ***
13480546-T-G 11324870-T-G ***
13742829-T-G 11587153-T-G ***
13471792-C-T 11316116-C-T ***
13468161-G-A 11312485-G-A ***
13466300-G-C 11310624-G-C ***
13463346-T-G 11307670-T-G ***
13460640-G-T 11304964-G-T ***
13460619-G-C 11304943-G-C ***
13458770-C-G 11303094-C-G ***
13458000-C-A 11302324-C-A ***
13457999-T-A 11302323-T-A ***
13457995-C-T 11302319-C-T ***
13457992-G-C 11302316-G-C ***
13457985-C-G 11302309-C-G ***
13737578-G-C 11581902-G-C ***
13878164-A-C 11757458-A-C ***
17270224-G-T 15158344-G-T ***
15498017-G-T 13386137-G-T ***
17258428-G-A 15146548-G-A ***
17153864-A-C 15041984-A-C ***
17002716-G-C 14890836-G-C ***
16729244-A-T 14617364-A-T ***
16710227-A-G 14598347-A-G ***
16709566-C-A 14597686-C-A ***
16540913-C-A 14429033-C-A ***
16540343-C-T 14428463-C-T ***
15922990-A-C 13811110-A-C ***
15922019-G-A 13810139-G-A ***
15891202-T-A 13779322-T-A ***
15858116-G-T 13746236-G-T ***
15479146-T-C 13367266-T-C ***
13971500-A-G 11850794-A-G ***
15291077-G-A 13179176-G-A ***
15242742-C-A 13130828-C-A ***
15119301-G-T 13007388-G-T ***
15103253-A-C 12991341-A-C ***
15098442-A-C 12986530-A-C ***
14986598-C-A 12874666-C-A ***
14721731-C-T 12609799-C-T ***
14625934-G-T ***
14610519-T-C 12498721-T-C ***
14292275-C-T 12171569-C-T ***
14181001-T-G 12060295-T-G ***
14180569-A-T 12059863-A-T ***
14118676-T-A 11997970-T-A ***
20632354-G-T 18470468-G-T P4_Prx ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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