Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > ZZ48

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
QC1R7
Manual
Edits
3512246-T-C 3644205-T-C FGC5330 +
3982069-A-G 4114028-A-G FGC5332 +
4024826-A-C 4156785-A-C FGC5333 +
5315550-T-C 5447509-T-C FGC5334 +
6401609-C-T 6533568-C-T FGC5336 +
6696148-T-C 6828107-T-C FGC5337 YY+
7501365-C-T 7633324-C-T FGC5340 IR1_L +
7773447-C-T 7905406-C-T FGC5341 YY+
7917598-C-T 8049557-C-T FGC5342 Y+
8079769-C-T 8211728-C-T FGC5343 YY+
8354795-T-C 8486754-T-C FGC5344 YY+
8379057-C-A 8511016-C-A FGC5345 YY+
8523475-C-T 8655434-C-T FGC5346 YY+
8632571-C-G 8764530-C-G PF7600 YY+
8698781-T-G 8830740-T-G FGC5347 YY+
8744425-G-T 8876384-G-T FGC5348 YY+
10062214-G-A 10224605-G-A FGC5350 +
13136520-A-G 10626006-A-G FGC5351 +
14113799-A-C 11993093-A-C FGC5352 Y+
14203180-A-T 12082474-A-T FGC5353 YY+
14384421-C-T 12263717-C-T FGC5354 Y36466 Y+
14446883-C-A 12326156-C-A FGC5355 Y+
14915734-C-T 12803801-C-T FGC5356 Y36467 YY+
14946001-T-C 12834075-T-C FGC5357 YY+
15748930-G-C 13637050-G-C FGC5358 Y+
15911088-T-G 13799208-T-G FGC5359 YY+
16821239-C-G 14709359-C-G FGC5360 YY+
16911453-C-T 14799573-C-T FGC5361 YY+
17000378-C-T 14888498-C-T FGC5362 Y+
17006871-G-C 14894991-G-C FGC5363 YY+
17425034-T-C 15313154-T-C FGC5365 YY+
17603265-A-G 15491385-A-G FGC5366 YY+
17674043-C-T 15562163-C-T FGC5367 Y36468 YY+
17740030-A-C 15628150-A-C FGC5368 YY+
17936315-G-T 15824435-G-T FGC5369 YY+
17979365-G-A 15867485-G-A FGC5370 Y+
18093388-A-T 15981508-A-T FGC5371 YY+
22436950-C-T 20275064-C-T FGC5373 DYZ19 +
22485853-G-T 20323967-G-T FGC5375 DYZ19 +
23032505-T-C 20870619-T-C FGC5376 YY+
23400221-T-C 21238335-T-C FGC5377 Y+
23869526-T-C 21707640-T-C FGC5378 Y+
21501940-GT-G 19340054-GT-G +
22698749-AT-A 20536863-AT-A +
21551714-CATAT-C 19389828-CATAT-C *
3564824-G-C 3696783-G-C FGC5331 *
5960316-A-G 6092275-A-G FGC5335 *
6869468-G-C 7001427-G-C FGC5338 Y36465 YY*
7086664-T-C 7218623-T-C FGC5339 YY*
9708890-G-A 9871281-G-A FGC5349 IR3_Prx *
14737560-T-C 12625628-T-C FGC7989 Y*
18793255-G-A 16681375-G-A FGC5372 YY*
22475690-G-T 20313804-G-T FGC5374 DYZ19 *
22428338-G-C 20266452-G-C DYZ19 **
6093471-G-A 6225430-G-A **
13419135-A-G 11263459-A-G **
58844010-G-C 56746861-C-G **
13417550-T-C 11261874-T-C Z12234 **
3374048-CATAAAATAAA-C 3506007-CATAAAATAAA-C 10×ATAAA**
13419165-G-GA 11263489-G-GA 8×A**
9700780-C-CAAAA 9863171-C-CAAAA IR3_Prx 23×A**
22428345-C-A 20266459-C-A DYZ19 **
9735605-G-GTTTTT 9897996-G-GTTTTT IR3_Prx 30×T**
13717605-C-G 11561929-C-G F18233 DYZ17 **
18643392-GACAC-G 16531512-GACAC-G 16×AC**
13714756-C-CGAACG 11559080-C-CGAACG DYZ17 **
9342865-T-TG 9505256-T-TG **
5241238-CTTTT-C 5373197-CTTTT-C 15×T**
3373983-T-C 3505942-T-C FT341044 **
4283106-T-C 4415065-T-C FGC78569 **
5260271-C-T 5392230-C-T **
5260275-T-G 5392234-T-G **
6214047-C-G 6346006-C-G IR3_Dst **
7023657-A-T 7155616-A-T **
7297817-C-T 7429776-C-T Y83837 **
8322030-A-G 8453989-A-G **
9492500-A-G 9654891-A-G **
13716719-A-C 11561043-A-C DYZ17 **
13716746-G-C 11561070-G-C DYZ17 **
13716751-C-G 11561075-C-G DYZ17 **
14795508-G-C 12683579-G-C Y92218 **
14795549-G-C 12683620-G-C Y92219 **
16519280-A-G 14407400-A-G **
17748826-A-G 15636946-A-G FT337648 **
18129140-T-A 16017260-T-A Y101413 **
22270461-G-C 20108575-G-C BY214999 DYZ19 **
22438401-G-T 20276515-G-T DYZ19 **
22488333-G-A 20326447-G-A DYZ19 **
26123669-C-T 23977522-C-T P1_Y1 **
27334917-C-T 25188770-C-T P1_g3 **
15420132-C-CAAAAAAA 13308252-C-CAAAAAAA 18×A**
20252796-C-CAAAAAAAAA 18090910-C-CAAAAAAAAA P5_Dst 24×A**
23036678-CAAAAAAAAA-C 20874792-CAAAAAAAAA-C 21×A**
23317649-C-CTTTT 21155763-C-CTTTT 37×T**
22503403-C-G 20341517-C-G DYZ19 ***
28586585-C-A 26440438-C-A ***
22326435-T-A 20164549-T-A DYZ19 ***
13717326-GAATGGAATTA-G 11561650-GAATGGAATTA-G DYZ17 ***
13716804-G-A 11561128-G-A S5456 A10321Z17571 DYZ17 ***
13716806-T-G 11561130-T-G S5456Z17572 DYZ17 ***
22326461-G-C 20164575-G-C DYZ19 ***
13124959-A-G 10614445-A-G ***
22491685-C-G 20329799-C-G DYZ19 ***
22231993-A-T 20070107-A-T DYZ19 ***
22252712-G-T 20090826-G-T DYZ19 ***
22252716-G-C 20090830-G-C DYZ19 ***
22268293-A-G 20106407-A-G DYZ19 ***
22326470-A-G 20164584-A-G DYZ19 ***
58820351-T-C 56770520-A-G ***
58885329-T-C 56705542-A-G ***
58885346-C-T 56705525-G-A ***
58885501-A-G 56705370-T-C ***
22361037-GT-AC 20199151-GT-AC DYZ19 ***
22495772-A-AC 20333886-A-AC DYZ19 ***
58885303-TT-CA 56705567-AA-TG ***
58987211-ATCAC-TTCAT 56841064-ATCAC-TTCAT ***
19646325-G-T 17534445-G-T P5_Prx ***
22311188-T-C 20149302-T-C FT90099 DYZ19 ***
58848367-G-C 56742504-C-G ***
9953788-AT-GC 10116179-AT-GC ***
22113187-C-CAAAAA 19951301-C-CAAAAA 23×A***
22341240-TAGAGTTTGTTCC-CATTGTGTCCTCG 20179354-TAGAGTTTGTTCC-CATTGTGTCCTCG DYZ19 ***
22341613-ACAGA-CCAGC 20179727-ACAGA-CCAGC DYZ19 ***
58836198-GTTCGATTCCCTTCCA-G 56754648-TGGAATCGAATGGAAG-T ***
22248431-C-T 20086545-C-T DYZ19 ***
22252800-C-G 20090914-C-G DYZ19 ***
22252803-T-C 20090917-T-C DYZ19 ***
22252915-T-A 20091029-T-A DYZ19 ***
22268297-G-T 20106411-G-T DYZ19 ***
22282202-C-T 20120316-C-T DYZ19 ***
58863395-T-C 56727476-A-G ***
58836697-AATTGCATTCCATTAG-A 56754155-GAATCTAATGGAATGC-G ***
22236443-C-G 20074557-C-G DYZ19 ***
22420975-C-G 20259089-C-G DYZ19 ***
22488459-T-C 20326573-T-C DYZ19 ***
18297876-C-CTTTTT 16185996-C-CTTTTT P6_Prx 31×T***
22367929-CATG-GATT 20206043-CATG-GATT DYZ19 ***
22420995-TG-AT 20259109-TG-AT DYZ19 ***
20541573-T-C 18379687-T-C P5_Dst ***
22344756-C-T 20182870-C-T DYZ19 ***
58844807-A-T 56746064-T-A ***
13465743-TTCCT-GTCCC 11310067-TTCCT-GTCCC ***
22236528-TA-AT 20074642-TA-AT DYZ19 ***
22360164-C-CCTCG 20198278-C-CCTCG DYZ19 ***
20541578-T-C 18379692-T-C P5_Dst ***
22268217-T-A 20106331-T-A DYZ19 ***
13414797-A-ATCTT 11259121-A-ATCTT 20×T***
22249323-TC-AT 20087437-TC-AT DYZ19 ***
22495767-GC-A 20333881-GC-A DYZ19 ***
18403055-G-A 16291175-G-A P6_Gap ***
22231844-A-C 20069958-A-C DYZ19 ***
22231847-T-G 20069961-T-G DYZ19 ***
22361637-T-G 20199751-T-G DYZ19 ***
22421324-T-C 20259438-T-C DYZ19 ***
58890426-G-C 56700445-C-G ***
22421286-GAAC-TTACA 20259400-GAAC-TTACA DYZ19 ***
22421293-AGAA-GGAG 20259407-AGAA-GGAG DYZ19 ***
22421312-TTAC-CAGT 20259426-TTAC-CAGT DYZ19 ***
22421360-CC-AT 20259474-CC-AT DYZ19 ***
58912945-GGC-TGT 56677924-GCC-ACA ***
13463425-T-C 11307749-T-C ***
22481323-A-T 20319437-A-T DYZ19 ***
8964954-N-T 9096913-N-T ***
22502594-T-C 20340708-T-C DYZ19 ***
26499948-G-T 24353801-G-T P1_Y1 ***
58837044-T-G 56753827-A-C ***
58843764-AGATTCCATTCCGTAC-A 56747080-AGGAATGGAATCGTAC-A ***
26508346-C-T 24362199-C-T P1_Y1 ***
27423537-A-T 25277390-A-T P1_g3 ***
22421463-AC-GG 20259577-AC-GG DYZ19 ***
22289787-T-G 20127901-T-G DYZ19 ***
22289732-GTC-ATA 20127846-GTC-ATA DYZ19 ***
19187385-A-ATTTTTT 17075505-A-ATTTTTT 28×T***
13716904-T-A 11561228-T-A DYZ17 ***
22236494-G-T 20074608-G-T DYZ19 ***
22355186-G-A 20193300-G-A DYZ19 ***
10029163-A-G 10191554-A-G ***
19646345-G-A 17534465-G-A P5_Prx ***
22293063-AC-CA 20131177-AC-CA DYZ19 ***
13714159-C-G 11558483-C-G DYZ17 ***
58909249-T-C 56681622-A-G ***
13716528-G-GA 11560852-G-GA DYZ17 ***
58909204-G-C 56681667-C-G ***
22293051-A-T 20131165-A-T DYZ19 ***
24386278-TTA-T 22240131-TTA-T ***
13734057-G-C 11578381-G-C DYZ17 ***
22249416-T-C 20087530-T-C DYZ19 ***
22504798-A-C 20342912-A-C DYZ19 ***
22337744-TTGA-CTGG 20175858-TTGA-CTGG DYZ19 ***
19646334-T-C 17534454-T-C P5_Prx ***
19646363-C-G 17534483-C-G P5_Prx ***
19646367-G-T 17534487-G-T P5_Prx ***
8160178-C-CAAAAAAA 8292137-C-CAAAAAAA 20×A***
58868394-TTCCATTCCGTGGCTG-T 56722453-TGGAATGGACAGCCAC-T ***
27462492-C-A 25316345-C-A P1_Y2 ***
20420960-TAA-T 18259074-TAA-T P5_Dst 17×A***
58850963-T-G 56739908-A-C ***
16641870-TAC-T 14529990-TAC-T ***
6003909-A-C 6135868-A-C ***
13713149-AAGTGGAATGGCATCG-A 11557473-AAGTGGAATGGCATCG-A DYZ17 ***
13715245-T-C 11559569-T-C FT449495 DYZ17 ***
18454876-TTTCC-T 16342996-TTTCC-T P6_Dst ***
19073865-TATATAC-T 16961985-TATATAC-T ***
13716502-A-G 11560826-A-G DYZ17 ***
13716519-C-A 11560843-C-A DYZ17 ***
22481563-GCAGT-ACAGC 20319677-GCAGT-ACAGC DYZ19 ***
22481617-T-A 20319731-T-A DYZ19 ***
20025431-TC-CT 17913551-TC-CT P5_Prx ***
13717777-GTCA-CTCG 11562101-GTCA-CTCG DYZ17 ***
4021912-C-T 4153871-C-T ***
13428089-C-T 11272413-C-T ***
13485386-G-T 11329710-G-T ***
13716895-C-T 11561219-C-T BY211325 FGC47175 DYZ17 ***
22358647-TT-CG 20196761-TT-CG DYZ19 ***
13470216-G-A 11314540-G-A FGC79869 ***
22341174-AC-A 20179288-AC-A DYZ19 ***
22341181-CG-TT 20179295-CG-TT DYZ19 ***
22352624-G-T 20190738-G-T DYZ19 ***
22341164-G-T 20179278-G-T DYZ19 ***
22505136-G-A 20343250-G-A DYZ19 ***
3570948-G-A 3702907-G-A ***
13469493-C-A 11313817-C-A ***
6113960-T-C 6245919-T-C ***
2791494-A-T 2923453-A-T ***
3570956-G-A 3702915-G-A ***
4089459-T-C 4221418-T-C ***
4138829-A-T 4270788-A-T ***
6130584-A-G 6262543-A-G ***
6164520-A-G 6296479-A-G IR3_Dst ***
6204461-T-A 6336420-T-A IR3_Dst ***
9349981-G-C 9512372-G-C ***
13481147-C-A 11325471-C-A ***
13488965-G-A 11333289-G-A ***
13715539-G-T 11559863-G-T DYZ17 ***
13715540-T-G 11559864-T-G DYZ17 ***
13715546-A-T 11559870-A-T DYZ17 ***
13715547-G-C 11559871-G-C DYZ17 ***
13715687-A-T 11560011-A-T DYZ17 ***
13716706-G-C 11561030-G-C DYZ17 ***
13716764-G-C 11561088-G-C DYZ17 ***
13716946-T-G 11561270-T-G DYZ17 ***
13717210-T-G 11561534-T-G DYZ17 ***
13717611-A-C 11561935-A-C DYZ17 ***
13728337-A-G 11572661-A-G DYZ17 ***
13732476-T-G 11576800-T-G DYZ17 ***
14184472-G-A 12063766-G-A ***
17542260-T-C 15430380-T-C ***
17998844-G-A 15886964-G-A P7_Gap ***
19270559-T-A 17158679-T-A ***
19646313-A-C 17534433-A-C P5_Prx ***
19646319-T-C 17534439-T-C P5_Prx ***
19953484-A-T 17841604-A-T P5_Prx ***
20409798-C-A 18247912-C-A P5_Dst ***
21199959-G-A 19038073-G-A ***
22235010-C-T 20073124-C-T DYZ19 ***
22297278-C-A 20135392-C-A DYZ19 ***
22361072-T-G 20199186-T-G DYZ19 ***
22364716-T-A 20202830-T-A DYZ19 ***
22436439-A-C 20274553-A-C FT456060 DYZ19 ***
22443683-C-T 20281797-C-T DYZ19 ***
22481820-G-A 20319934-G-A DYZ19 ***
22481825-G-A 20319939-G-A DYZ19 ***
22496065-A-C 20334179-A-C DYZ19 ***
22505207-G-A 20343321-G-A DYZ19 ***
25026065-G-T 22879918-G-T g1 ***
27123992-C-T 24977845-C-T P1_g3 ***
27651757-C-T 25505610-C-T P1_Y2 ***
27701895-C-A 25555748-C-A P1_Y2 ***
28117299-G-T 25971152-G-T P1_b4 ***
58857616-A-T 56733255-T-A ***
58863167-T-C 56727704-A-G ***
58885407-C-A 56705464-G-T ***
58885412-A-T 56705459-T-A ***
58885417-A-C 56705454-T-G ***
58895364-G-C 56695507-C-G ***
58908615-A-T 56682256-T-A ***
58909071-A-T 56681800-T-A ***
58916547-C-A 56674324-G-T ***
17054866-A-AATAT 14942986-A-AATAT 13×AT***
2888870-C-CGAAAAAAA 3020829-C-CGAAAAAAA 32×A***
3570953-TAAGTAAAC-AAAAAAAAA 3702912-TAAGTAAAC-AAAAAAAAA ***
5260271-CGTGT-TGTGG 5392230-CGTGT-TGTGG ***
5493431-C-CTTTTT 5625390-C-CTTTTT 24×T***
6089764-G-GTTTT 6221723-G-GTTTT 31×T***
6521551-G-GTTTT 6653510-G-GTTTT 17×T***
7280952-C-CTTTT 7412911-C-CTTTT 26×T***
8467821-T-TTGTG 8599780-T-TTGTG 11×TG***
8568465-G-GTTTT 8700424-G-GTTTT 22×T***
8575956-A-ATT 8707915-A-ATT 28×T***
10006420-GGCAG-AGCAT 10168811-GGCAG-AGCAT ***
13470229-TGG-AGA 11314553-TGG-AGA ***
13480805-CT-GG 11325129-CT-GG ***
13484100-TGCAGAC-GGAAGAG 11328424-TGCAGAC-GGAAGAG ***
13488929-CGTGT-TGTGG 11333253-CGTGT-TGTGG ***
13535639-G-GTATA 11379963-G-GTATA 21×TA***
13712902-AGGAA-CGGAC 11557226-AGGAA-CGGAC DYZ17 ***
13713471-GTG-CTC 11557795-GTG-CTC DYZ17 ***
13715557-AAATAATCG-A 11559881-AAATAATCG-A DYZ17 ***
13716587-TCCTCA-GACTGG 11560911-TCCTCA-GACTGG DYZ17 ***
13716751-CGA-GGAACAAT 11561075-CGA-GGAACAAT DYZ17 ***
13716763-AG-TAC 11561087-AG-TAC DYZ17 ***
13716768-AT-A 11561092-AT-A DYZ17 ***
13716777-TAATTG-GAATGT 11561101-TAATTG-GAATGT DYZ17 ***
13717595-CCAA-GCAT 11561919-CCAA-GCAT DYZ17 ***
15260684-C-CTTTTTTTTTT 13148768-C-CTTTTTTTTTT 25×T***
16641872-CATATAT-C 14529992-CATATAT-C 12×AT***
17130400-C-CTTTTTT 15018520-C-CTTTTTT 21×T***
17275766-G-GGGAAT 15163886-G-GGGAAT ***
17317720-TCACA-T 15205840-TCACA-T 23×CA***
18804474-A-AAGAGAACGAGGAAAG 16692594-A-AAGAGAACGAGGAAAG 26×AG***
19437426-G-GGGGGA 17325546-G-GGGGGA ***
22234387-AGAAAGAAGA-GGAAGGTAGT 20072501-AGAAAGAAGA-GGAAGGTAGT DYZ19 ***
22252916-GGT-TGA 20091030-GGT-TGA DYZ19 ***
22341205-GTT-CTG 20179319-GTT-CTG DYZ19 ***
22358631-TTTG-CTTT 20196745-TTTG-CTTT DYZ19 ***
22361551-GTA-ATT 20199665-GTA-ATT DYZ19 ***
22361610-TACT-CACA 20199724-TACT-CACA DYZ19 ***
24614178-C-CAAAAAA 22468031-C-CAAAAAA P3_t2 19×A***
58840442-CTTC-GTTG 56750426-GAAG-CAAC ***
58885397-ACTCC-TATAG 56705470-GGAGT-CTATA ***
58885424-ACTAT-TCTAG 56705443-ATAGT-CTAGA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual18316065-A-G16204185-A-GInformation from Richard Rocca.
Manual18493038-T-C16381158-T-CInformation from Richard Rocca.