Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > FGC10125 > FGC10117 > FGC10122

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
107327
FGC
7DCXW
18083719-G-T 15971839-G-T FGC10126 YY++
15672278-T-C 13560398-T-C FGC10123 Y+
6752688-G-A 6884647-G-A FGC10115 YY++
13652585-C-T 11496909-C-T FGC10120 ++
3523616-A-T 3655575-A-T FGC10113 +
8835720-T-C 8967679-T-C FGC10118 YY++
28533877-T-C 26387730-T-C FGC10130 Y+
23997311-A-G 21851164-A-G FGC10128 Y+
24407373-A-G 22261226-A-G FGC10129 +
5619940-C-T 5751899-C-T FGC10114 +
19117668-GT-G 17005788-GT-G 9×T+**
19053496-C-T 16941616-C-T FGC10117FGC10127 Y7362 YY+
10067614-G-A 10230005-G-A FGC10119 *
22868276-T-TA 20706390-T-TA FGC10131 *
13390036-C-T 11234360-C-T **
13205595-AAT-A 11049919-AAT-A 9×AT**
27151303-A-ATTTT 25005156-A-ATTTT P1_g3 25×T**
4571079-A-AAAAG 4703038-A-AAAAG 6×AAAG**
15245576-A-G 13133662-A-G CTS3890 **
5446428-C-A 5578387-C-A **
18143385-A-T 16031505-A-T **
22972624-A-G 20810738-A-G **
13857542-GATGGA-G 11736836-GATGGA-G 9×ATGGA**
6089764-G-GTTTTT 6221723-G-GTTTTT 31×T**
20252796-C-CAA 18090910-C-CAA P5_Dst 24×A**
58872986-C-G 56717885-G-C ***
58872945-C-T 56717926-G-A ***
58872949-C-T 56717922-G-A ***
58877063-G-T 56713808-C-A ***
58872946-G-A 56717925-C-T ***
58877082-T-C 56713789-A-G ***
58893226-A-T 56697645-T-A ***
58872947-T-G 56717924-A-C ***
58876384-A-T 56714487-T-A ***
21295234-CT-C 19133348-CT-C 17×T***
58906478-C-A 56684393-G-T ***
18106353-G-GT 15994473-G-GT 15×T***
4583023-CTG-TTT 4714982-CTG-TTT ***
2812777-A-ATTTTTTT 2944736-A-ATTTTTTT 30×T***
13463573-C-CG 11307897-C-CG ***
14559665-G-GA 12447866-G-GA 10×A***
21082306-AAG-A 18920420-AAG-A ***
4778178-C-CA 4910137-C-CA 15×A***
5073584-A-AAT 5205543-A-AAT ***
58910843-G-C 56680028-C-G ***
18895707-G-GA 16783827-G-GA 12×A***
7021709-C-CT 7153668-C-CT 17×T***
10029583-TG-CA 10191974-TG-CA ***
58872938-C-T 56717933-G-A ***
3418744-AAC-A 3550703-AAC-A 16×AC***
13203978-CCTC-GTAT 11048302-CCTC-GTAT ***
59033934-G-A 56887787-G-A ***
58872941-C-G 56717930-G-C ***
8702810-G-GT,T 8834769-G-GT,T 21×T***
58872400-C-G 56718471-G-C ***
27590549-C-A 25444402-C-A P1_Y2 ***
58823351-C-A 56767520-G-T ***
58820272-C-T 56770599-G-A ***
28794963-C-T 26648816-C-T ***
28491358-C-T 26345211-C-T ***
28491351-C-T 26345204-C-T ***
27808453-C-T 25662306-C-T P1_Y2 15×T***
27426505-C-T 25280358-C-T P1_g3 ***
58832612-C-A 56758259-G-T ***
27426496-C-A 25280349-C-A P1_g3 ***
27367676-A-T 25221529-A-T P1_g3 ***
27367655-A-T 25221508-A-T P1_g3 ***
27367638-T-A 25221491-T-A P1_g3 ***
27335122-G-A 25188975-G-A P1_g3 ***
26950984-A-G 24804837-A-G P1_r3 ***
58823363-C-A 56767508-G-T ***
58833811-T-G 56757060-A-C ***
58872375-C-T 56718496-G-A ***
58846750-G-A 56744121-C-T ***
58870766-T-A 56720105-A-T ***
58870737-A-T 56720134-T-A ***
58868581-T-A 56722290-A-T ***
58868573-A-C 56722298-T-G ***
58858774-C-A 56732097-G-T ***
58847908-C-T 56742963-G-A ***
58843864-C-T 56747007-G-A ***
58836442-G-A 56754429-C-T ***
58843859-A-C 56747012-T-G ***
58840716-T-C 56750155-A-G ***
58838765-T-C 56752106-A-G ***
58838409-G-A 56752462-C-T ***
58836466-C-T 56754405-G-A ***
58836457-C-T 56754414-G-A ***
58836447-T-A 56754424-A-T ***
58861978-C-T 56728893-G-A ***
13302551-ACAG-CCAA 11146875-ACAG-CCAA ***
4650500-TATATATATATATATATATATACACACACACACAC-T 4782459-TATATATATATATATATATATACACACACACACAC-T ***
25289814-A-AG 23143667-A-AG P2_r1 ***
58861963-TTCA-GTCC 56728905-TGAA-GGAC ***
58843709-CAAT-GGAG 56747159-ATTG-CTCC ***
28597843-CTTTT-C 26451696-CTTTT-C 15×T***
28491345-A-AAACCCCCCAAAAAAAAG 26345198-A-AAACCCCCCAAAAAAAAG ***
25289842-TT-GA 23143695-TT-GA P2_r1 ***
25289820-AATGACAGAAAGAAGT-GATTAGCTTC 23143673-AATGACAGAAAGAAGT-GATTAGCTTC P2_r1 ***
25289745-TG-CA 23143598-TG-CA P2_r1 ***
58872973-T-TTGGAG 56717896-G-GACTCC ***
23036678-CAA-C 20874792-CAA-C 21×A***
22504697-AC-A 20342811-AC-A DYZ19 ***
22481363-GTGTT-CTGTC 20319477-GTGTT-CTGTC DYZ19 ***
22360334-CGAA-AGAC 20198448-CGAA-AGAC DYZ19 ***
22341240-TAGAGTTTGTTCC-CATTGTGTCCTCG 20179354-TAGAGTTTGTTCC-CATTGTGTCCTCG DYZ19 ***
22309406-ACTGTAGACA-TCTGCGGACC 20147520-ACTGTAGACA-TCTGCGGACC DYZ19 ***
58872300-AG-CC 56718570-CT-GG ***
59013641-T-TTATTTTATTTTA 56867494-T-TTATTTTATTTTA ***
22231844-AGCT-CGCG 20069958-AGCT-CGCG DYZ19 ***
28804494-AAT-GAG 26658347-AAT-GAG ***
59021840-C-G 56875693-C-G ***
26261840-T-C 24115693-T-C P1_Y1 ***
18639348-GT-G 16527468-GT-G 11×T***
19646276-T-GG 17534396-T-GG P5_Prx ***
58870750-CATTTC-G 56720116-GAAATG-C ***
25289800-TTCAG-ATC 23143653-TTCAG-ATC P2_r1 ***
22341150-TTCT-CTCA 20179264-TTCT-CTCA DYZ19 ***
5937238-CTCTC-ATA 6069197-CTCTC-ATA ***
25289808-TGCCT-AGTA 23143661-TGCCT-AGTA P2_r1 ***
22268297-GTGACC-TTGAGT 20106411-GTGACC-TTGAGT DYZ19 ***
58872941-CATTCGTTC-GATTTAGTT 56717922-GAACGAATG-AACTAAATC ***
20569648-G-AA 18407762-G-AA P5_Dst ***
20252794-TAC-AAAAA 18090908-TAC-AAAAA P5_Dst ***
13606903-G-AA 11451227-G-AA ***
22251635-TA-GT 20089749-TA-GT DYZ19 ***
19937284-G-GCCCCCCCCCCC 17825404-G-GCCCCCCCCCCC P5_Prx 13×C***
5338087-A-ATTTTTT 5470046-A-ATTTTTT 16×T***
13386059-GAA-G 11230383-GAA-G 10×A***
13535700-TAC-T 11380024-TAC-T ***
13489615-AC-A 11333939-AC-A ***
13485817-AAA-CAG 11330141-AAA-CAG ***
13483494-GGC-CAA 11327818-GGC-CAA ***
13480147-TCA-T 11324471-TCA-T ***
13467903-GAATT-AAATA 11312227-GAATT-AAATA ***
13378119-GC-CT 11222443-GC-CT ***
13703173-GTTGAATGAAGTGG-ATAGACTGGCGTGC 11547497-GTTGAATGAAGTGG-ATAGACTGGCGTGC ***
13326060-T-TCA 11170384-T-TCA 14×A***
26306656-T-A 24160509-T-A P1_Y1 ***
9962643-CCGG-TTGA 10125034-CCGG-TTGA ***
8119053-G-GTTTTTTTT 8251012-G-GTTTTTTTT 16×T***
6867680-G-GTTTT 6999639-G-GTTTT 18×T***
5492439-C-CTTT 5624398-C-CTTT 18×T***
13611988-G-GTTTTTTCTTT 11456312-G-GTTTTTTCTTT 19×T***
13803955-AC-GG 11683249-AC-GG ***
19656585-TG-CT 17544705-TG-CT P5_Prx ***
18758950-CT-C 16647070-CT-C 13×T***
19656560-CTTCTTA-GTCATTG 17544680-CTTCTTA-GTCATTG P5_Prx ***
19656534-TG-CA 17544654-TG-CA P5_Prx ***
19646265-A-AGC 17534385-A-AGC P5_Prx ***
19646223-ACTATG-TCCATC 17534343-ACTATG-TCCATC P5_Prx ***
19646217-AC-A 17534337-AC-A P5_Prx ***
19126435-C-CCAAAAAAAAAA 17014555-C-CCAAAAAAAAAA ***
18271018-G-GT 16159138-G-GT 17×T***
14825824-CTTTTTT-C 12713891-CTTTTTT-C 18×T***
18140123-GCAA-ATAG 16028243-GCAA-ATAG ***
16598984-CAA-C 14487104-CAA-C 25×A***
16242402-CTTTTTTT-C 14130522-CTTTTTTT-C 18×T***
16136884-AC-TT 14025004-AC-TT P8_Dst ***
15309738-GC-AA 13197842-GC-AA ***
15296804-CCTTGTGCTTCT-C 13184903-CCTTGTGCTTCT-C ***
15171226-CTTTTTTT-C 13059312-CTTTTTTT-C 19×T***
26445755-C-T 24299608-C-T P1_Y1 ***
25661601-G-A 23515454-G-A P1_b3 ***
26306649-T-A 24160502-T-A P1_Y1 ***
13250749-G-A 11095073-G-A ***
13463578-C-A 11307902-C-A ***
13378120-C-T 11222444-C-T ***
13378119-G-C 11222443-G-C ***
13333675-A-T 11177999-A-T ***
13319909-A-C 11164233-A-C ***
13319782-A-T 11164106-A-T ***
13114411-T-C 10603897-T-C ***
13467876-C-T 11312200-C-T ***
13114407-G-A 10603893-G-A ***
13114403-C-A 10603889-C-A ***
13114371-G-A 10603857-G-A ***
13107688-C-G 10597174-C-G ***
10029655-G-A 10192046-G-A ***
10025628-G-A 10188019-G-A ***
13467436-C-A 11311760-C-A ***
13467891-A-T 11312215-A-T ***
9986943-A-G 10149334-A-G ***
13547761-C-G 11392085-C-G ***
13734101-G-C 11578425-G-C ***
13734098-A-T 11578422-A-T ***
13734082-T-C 11578406-T-C ***
13728301-T-A 11572625-T-A ***
13724927-A-T 11569251-A-T ***
13724902-G-A 11569226-G-A ***
13531976-C-A 11376300-C-A ***
13470632-C-T 11314956-C-T ***
13488888-G-T 11333212-G-T ***
13485370-G-A 11329694-G-A ***
13485335-T-A 11329659-T-A ***
13484480-A-T 11328804-A-T ***
13484476-G-A 11328800-G-A ***
13481183-C-A 11325507-C-A ***
13475717-C-T 11320041-C-T ***
10021787-C-T 10184178-C-T ***
9215444-G-T 9377835-G-T ***
16136884-A-T 14025004-A-T P8_Dst ***
13390106-G-A 11234430-G-A ***
13222970-A-G 11067294-A-G ***
13319934-A-C 11164258-A-C ***
27367569-G-A 25221422-G-A P1_g3 ***
10061810-C-A 10224201-C-A ***
13475702-C-T 11320026-C-T ***
13463567-A-C 11307891-A-C ***
13290949-G-A 11135273-G-A ***
13480076-T-A 11324400-T-A ***
10029623-C-T 10192014-C-T ***
10029513-A-G 10191904-A-G ***
26483733-T-C 24337586-T-C P1_Y1 ***
22342921-T-A 20181035-T-A DYZ19 ***
22232196-T-A 20070310-T-A DYZ19 ***
22232192-G-T 20070306-G-T DYZ19 ***
22232190-G-T 20070304-G-T DYZ19 ***
13290803-G-C 11135127-G-C ***
4063676-G-A 4195635-G-A ***
9190980-A-C 9353371-A-C ***
5476609-G-A 5608568-G-A ***
7027456-G-T 7159415-G-T ***
6565943-A-G 6697902-A-G ***
6192690-A-T 6324649-A-T IR3_Dst ***
6121384-G-T 6253343-G-T ***
6014914-T-A 6146873-T-A ***
5704399-G-T 5836358-G-T PF1947 ***
5365074-T-C 5497033-T-C ***
13480073-T-G 11324397-T-G ***
5359664-G-T 5491623-G-T ***
4650495-A-G 4782454-A-G ***
4650489-A-G 4782448-A-G ***
4521593-C-A 4653552-C-A ***
4074420-G-T 4206379-G-T ***
3999839-A-G 4131798-A-G ***
28804503-C-G 26658356-C-G ***
13734106-G-A 11578430-G-A ***
16136885-C-T 14025005-C-T P8_Dst ***
26306647-G-T 24160500-G-T P1_Y1 ***
22324875-T-A 20162989-T-A DYZ19 ***
22341206-T-G 20179320-T-G DYZ19 ***
22337480-C-A 20175594-C-A DYZ19 ***
22337295-A-T 20175409-A-T DYZ19 ***
22337291-C-A 20175405-C-A DYZ19 ***
22325098-G-C 20163212-G-C DYZ19 ***
22324914-T-G 20163028-T-G DYZ19 ***
22309421-G-T 20147535-G-T DYZ19 ***
22421693-T-A 20259807-T-A DYZ19 ***
22309411-A-G 20147525-A-G DYZ19 ***
22309406-A-T 20147520-A-T DYZ19 ***
22292347-G-A 20130461-G-A DYZ19 ***
22263842-T-C 20101956-T-C DYZ19 ***
22251641-T-A 20089755-T-A DYZ19 ***
22251636-A-T 20089750-A-T DYZ19 ***
22343914-T-A 20182028-T-A DYZ19 ***
22433219-G-T 20271333-G-T DYZ19 ***
22251571-G-C 20089685-G-C DYZ19 ***
7867879-G-GGAAAGAAAGAAAGAAAGAAA 7999838-G-GGAAAGAAAGAAAGAAAGAAA 16×GAAA***
25954347-G-T 23808200-G-T P1_Y1 ***
25661630-T-A 23515483-T-A P1_b3 ***
25661629-T-A 23515482-T-A P1_b3 ***
25661614-T-A 23515467-T-A P1_b3 ***
25661609-T-A 23515462-T-A P1_b3 ***
25661607-T-A 23515460-T-A P1_b3 ***
24836796-G-A 22690649-G-A P3_b2 ***
22450059-G-T 20288173-G-T DYZ19 ***
24836794-A-G 22690647-A-G P3_b2 ***
24535247-A-C 22389100-A-C A10467 P3_t2 ***
23223307-C-A 21061421-C-A 35×A***
22495777-A-G 20333891-A-G DYZ19 ***
22480972-C-A 20319086-C-A DYZ19 ***
22480960-C-A 20319074-C-A DYZ19 ***
22456607-T-C 20294721-T-C DYZ19 ***
22251635-T-G 20089749-T-G DYZ19 ***
22251569-T-C 20089683-T-C DYZ19 ***
16152191-A-T 14040311-A-T P8_Dst ***
19646370-T-G 17534490-T-G P5_Prx ***
20425548-G-A 18263662-G-A P5_Dst ***
20369452-G-T 18207566-G-T P5_Dst ***
19977276-G-T 17865396-G-T P5_Prx ***
19847663-G-T 17735783-G-T A3461 P5_Prx ***
19716753-A-T 17604873-A-T P5_Prx ***
19716716-A-T 17604836-A-T P5_Prx ***
19646276-T-G 17534396-T-G P5_Prx ***
20426719-G-T 18264833-G-T P5_Dst ***
19646250-C-T 17534370-C-T P5_Prx ***
19646225-T-C 17534345-T-C P5_Prx ***
18478890-C-T 16367010-C-T P6_Dst ***
18140114-C-T 16028234-C-T ***
16533561-C-T 14421681-C-T ***
16152201-A-T 14040321-A-T P8_Dst ***
16152196-T-A 14040316-T-A P8_Dst ***
20426712-G-T 18264826-G-T P5_Dst ***
20426783-C-T 18264897-C-T P5_Dst ***
22251567-T-C 20089681-T-C DYZ19 ***
20787484-C-T 18625598-C-T P4_Prx ***
22251557-A-T 20089671-A-T DYZ19 ***
22236703-C-G 20074817-C-G DYZ19 ***
22236522-G-A 20074636-G-A DYZ19 ***
22226589-T-A 20064703-T-A DYZ19 ***
22226585-G-C 20064699-G-C DYZ19 ***
21292579-T-A 19130693-T-A 15×A***
20787478-G-T 18625592-G-T P4_Prx ***
20533555-T-A 18371669-T-A P5_Dst ***
20787477-G-T 18625591-G-T P4_Prx ***
20787464-G-T 18625578-G-T P4_Prx ***
20787461-A-T 18625575-A-T P4_Prx ***
20533856-C-A 18371970-C-A P5_Dst ***
20533839-C-T 18371953-C-T P5_Dst ***
20533600-T-C 18371714-T-C P5_Dst ***
20533590-C-T 18371704-C-T P5_Dst ***
9157023-TA-T 9319414-TA-T 12×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
Iles1324141011-15121213131330219-1011112514193015-15-17-17111219-241515181638-39121212915-1681010810101222-23161012121581222201312111311111212331591612272621121113121191212101111301213241310101915181324171216251224189141791111

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 7DCXW*16000000100000008300000
Kit: 1073271099004580112418097280
Used in age calculations16000000100000008300000
Counts of SNPs65
Variant counts last updated 2017-11-13 20:44:50.

* BED data not available. Using default values.


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