Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > BY3508 > L135 > BY3506

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
80805
14150766-C-G 12030060-C-G BY93404 YY+
18620865-A-T 16508985-A-T BY122660 YY+
8182686-G-A 8314645-G-A ZS9950BY31372 Y63233 YY+
8423519-G-A 8555478-G-A BY72591 YY+
8794270-A-G 8926229-A-G BY75939 YY+
22465466-T-C 20303580-T-C Y24874PF1181 DYZ19 +
9892320-C-G 10054711-C-G BY81818 YY+
13720448-A-G 11564772-A-G F11033 BY12857 +
22263108-G-T 20101222-G-T BY52219 DYZ19 +
21800878-G-A 19638992-G-A BY135528 YY+
19243467-G-A 17131587-G-A MF5108 YY+
18729350-T-C 16617470-T-C BY123474 YY+
17942972-G-T 15831092-G-T BY118600 YY+
22465947-G-A 20304061-G-A DYZ19 +
17904542-C-G 15792662-C-G BY118274 YY+
17767967-GA-G 15656087-GA-G 8×A+
15827602-G-A 13715722-G-A BY104395 YY+
15320543-A-C 13208649-A-C FT180302 YY+
15317002-G-A 13205108-G-A BY100789 YY+
15177302-G-A 13065388-G-A BY100051 YY+
14791518-T-C 12679589-T-C BY97625 YY+
14646534-T-C 12534598-T-C BY96958 YY+
14466361-G-A 12345634-G-A BY95924 YY+
14298694-TG-T 12177988-TG-T +
14254037-C-A 12133331-C-A BY156425 YY+
7326162-T-C 7458121-T-C FT1580 YY+
13720447-C-A 11564771-C-A +
23421401-AG-A 21259515-AG-A +
59033159-A-G 56887012-A-G **
25065481-AACAC-A 22919334-AACAC-A g1 18×AC**
13196474-A-C 11040798-A-C **
59033172-C-T 56887025-C-T **
22505078-A-T 20343192-A-T FGC82518 DYZ19 **
28804542-T-G 26658395-T-G **
13454512-A-C 11298836-A-C **
10015087-T-G 10177478-T-G **
27809437-C-A 25663290-C-A P1_Y2 **
13868755-GAAATCGAGTGGAACA-G 11748049-GAAATCGAGTGGAACA-G **
22273542-CA-T 20111656-CA-T DYZ19 **
13800937-A-G 11680231-A-G **
22499133-T-A 20337247-T-A DYZ19 **
23084073-G-A 20922187-G-A CTS11366 **
23084059-G-C 20922173-G-C CTS11364 **
27809502-T-A 25663355-T-A P1_Y2 **
13593553-C-T 11437877-C-T ***
10025953-G-A 10188344-G-A ***
13694287-T-A 11538611-T-A BY88842 ***
13688636-C-G 11532960-C-G BY51970 ***
13312067-T-C 11156391-T-C ***
13694098-GAATA-G 11538422-GAATA-G ***
13312072-T-A 11156396-T-A ***
13688635-C-CCAATAGAATG 11532959-C-CCAATAGAATG ***
13678254-T-C 11522578-T-C BY88108 ***
13692132-G-A 11536456-G-A ***
22421369-A-T 20259483-A-T DYZ19 ***
13676535-T-G 11520859-T-G ***
13459368-G-C 11303692-G-C ***
14937821-A-T 12825886-A-T ***
13483969-G-C 11328293-G-C ***
22360051-C-G 20198165-C-G DYZ19 ***
13711964-G-A 11556288-G-A ***
13450879-A-ACCACTCCACTCCTCTCCCCAACACT 11295203-A-ACCACTCCACTCCTCTCCCCAACACT ***
13639861-A-C 11484185-A-C FGC78075 ***
13483662-G-T 11327986-G-T ***
13474623-C-A 11318947-C-A ***
13593554-A-G 11437878-A-G ***
22430060-G-T 20268174-G-T DYZ19 ***
13194286-T-A 11038610-T-A FT440449 9×TTCCA***
10015657-C-G 10178048-C-G ***
10011019-C-T 10173410-C-T ***
13140153-C-CTCCATTCCAT 10629639-C-CTCCATTCCAT 12×TCCAT***
13856608-G-A 11735902-G-A ***
58854527-T-C 56736344-A-G ***
13138423-C-A 10627909-C-A ***
2824720-A-ACCC 2956679-A-ACCC ***
58828567-C-T 56762304-G-A ***
28810105-A-G 26663958-A-G ***
9515468-C-CT 9677859-C-CT 10×T***
9937550-G-A 10099941-G-A ***
9963464-G-A 10125855-G-A BY53959 ***
10010835-A-G 10173226-A-G ***
10010897-G-A 10173288-G-A FGC49523 ***
25395702-CT-C 23249555-CT-C P2_r2 20×T***
13194332-C-T 11038656-C-T ***
10020508-A-T 10182899-A-T ***
10025865-G-A 10188256-G-A ***
13138240-C-A 10627726-C-A ***
22498448-G-T 20336562-G-T DYZ19 ***
13138241-C-T 10627727-C-T ***
13138454-A-T 10627940-A-T ***
22454057-A-T 20292171-A-T DYZ19 ***
13138455-T-A 10627941-T-A ***
13138745-C-G 10628231-C-G ***
13138746-GACTCC-G 10628232-GACTCC-G 4×ACTCC***
13654236-A-G 11498560-A-G ***
13486181-G-C 11330505-G-C ***
13290292-G-T 11134616-G-T ***
10016061-T-C 10178452-T-C A16964 ***
13139596-CAAACCATTCT-C 10629082-CAAACCATTCT-C ***
13810879-G-A 11690173-G-A ***
25193954-AT-A 23047807-AT-A g1 10×T***
22421496-G-C 20259610-G-C DYZ19 ***
22421508-T-C 20259622-T-C DYZ19 ***
22465820-A-C 20303934-A-C DYZ19 ***
22465837-G-A 20303951-G-A ZS5188 FGC23372 DYZ19 ***
22465874-CA-C,CC 20303988-CA-C,CC DYZ19 ***
22465891-A-C 20304005-A-C DYZ19 ***
22465905-T-G 20304019-T-G DYZ19 ***
22465910-T-G 20304024-T-G DYZ19 ***
22491325-G-T 20329439-G-T DYZ19 ***
22498451-G-A 20336565-G-A DYZ19 ***
22498452-T-G 20336566-T-G DYZ19 ***
23180914-G-A 21019028-G-A ***
24179857-T-C 22033710-T-C P3_b1 ***
25285960-T-C 23139813-T-C P2_r1 ***
22362305-C-G 20200419-C-G BY25525 DYZ19 ***
25524693-CTTT-C 23378546-CTTT-C P1_gr1 33×T***
25807649-C-T 23661502-C-T P1_b3 ***
25897206-CAA-C 23751059-CAA-C P1_Y1 15×A***
25967992-C-T 23821845-C-T P1_Y1 ***
26919683-T-C 24773536-T-C P1_r3 ***
28800311-G-T 26654164-G-T ***
28800318-A-T 26654171-A-T ***
58828358-C-G 56762513-G-C ***
59030572-T-TTAA 56884425-T-TTAA 8×TA***
9963465-G-GTC 10125856-G-GTC ***
22421538-G-A,C 20259652-G-A,C DYZ19 ***
13680916-A-G,T 11525240-A-G,T ***
14937823-A-ATTTTCTTTTC,C 12825888-A-C 10×TTTTC***
13815538-CAATGAAATGA-C,G 11694832-CAATGAAATGA-C,G ***
22421489-C-G 20259603-C-G DYZ19 ***
22361031-G-T 20199145-G-T DYZ19 ***
13813966-GGACTC-G 11693260-GGACTC-G ***
15827586-T-C 13715706-T-C ***
13814013-C-A 11693307-C-A 5×ATGGA***
13825331-A-T 11704625-A-T ***
13826421-T-G 11705715-T-G ***
13835303-T-TGGAAC 11714597-T-TGGAAC ***
13838799-A-T 11718093-A-T ***
13840870-T-G 11720164-T-G ***
13850466-GGAAA-G 11729760-GGAAA-G ***
13853415-T-C 11732709-T-C ***
13860299-GGACTC-G 11739593-GGACTC-G ***
13861569-T-C 11740863-T-C ***
13868778-A-G 11748072-A-G ***
13511449-C-A 11355773-C-A ***
15320634-A-G 13208740-A-G ***
17146562-AT-A,AA 15034682-AT-A,AA ***
22360396-TGC-T,TGT 20198510-TGC-T,TGT DYZ19 ***
18275941-C-CG 16164061-C-CG P6_Prx ***
19586695-ATT-A 17474815-ATT-A P5_Prx 22×T***
19809406-G-T 17697526-G-T P5_Prx ***
19978407-C-CCAAAA 17866527-C-CCAAAA P5_Prx ***
21130587-C-CAAATAAAT 18968701-C-CAAATAAAT 11×AAAT***
22227183-G-A 20065297-G-A DYZ19 ***
22240994-C-G 20079108-C-G DYZ19 ***
22274523-T-G 20112637-T-G DYZ19 ***
22301427-C-T 20139541-C-T FGC78302 DYZ19 ***
22315669-T-C 20153783-T-C DYZ19 ***
22337983-T-G 20176097-T-G DYZ19 ***
22337984-A-T 20176098-A-T DYZ19 ***
22360098-G-A 20198212-G-A DYZ19 ***
22360103-A-G 20198217-A-G DYZ19 ***
13711825-A-T 11556149-A-T ***
9978287-C-T 10140678-C-T FT373646 ***
9982724-G-C 10145115-G-C ***
13704312-T-A 11548636-T-A ***
28809435-TGTAAG-T 26663288-TGTAAG-T ***
28791142-G-A 26644995-G-A ***
13867983-A-C 11747277-A-C ***
13707886-T-A 11552210-T-A BY211241 ***
13838787-C-G 11718081-C-G ***
22421361-C-G 20259475-C-G DYZ19 ***
13702262-T-A 11546586-T-A ***
13799470-G-A 11678764-G-A ***
59033183-T-C 56887036-T-C ***
13850495-C-G 11729789-C-G FGC58341 ***
58855328-C-G 56735543-G-C ***
22261352-A-T 20099466-A-T DYZ19 ***
13860379-G-A 11739673-G-A ***
13860372-A-T 11739666-A-T ***
13850497-G-A 11729791-G-A 4×ATGGA***
13648199-C-T 11492523-C-T ***
13816803-A-G 11696097-A-G Z4570 4×GAATG***
13652198-GAGTCA-G 11496522-GAGTCA-G ***
58974241-A-C 56828094-A-C ***
13474129-T-C 11318453-T-C ***
13866929-T-G 11746223-T-G ***
28791252-A-T 26645105-A-T ***
22451492-T-G 20289606-T-G DYZ19 ***
13743824-G-A 11588148-G-A ***
13706510-G-C 11550834-G-C BY1009 ***
13817997-T-G 11697291-T-G ***
13817886-G-A 11697180-G-A ***
58912893-T-C,G 56677978-A-C,G ***
13869074-G-C 11748368-G-C ***
13483228-C-G 11327552-C-G ***
13474135-A-G 11318459-A-G ***
13474134-T-A 11318458-T-A ***
13294361-T-C 11138685-T-C ***
22491270-A-G 20329384-A-G S3099 DYZ19 ***
13469698-T-G 11314022-T-G ***
13853386-C-T 11732680-C-T BY91499 ***
13453945-C-G 11298269-C-G ***
58982145-C-G 56835998-C-G ***
13842725-ATGGAG-A 11722019-ATGGAG-A ***
28794514-T-A 26648367-T-A ***
28794510-G-C 26648363-G-C ***
28794500-C-A 26648353-C-A ***
28794498-A-G 26648351-A-G ***
22505886-C-G 20344000-C-G DYZ19 ***
22295878-T-G 20133992-T-G DYZ19 ***
13846215-T-G 11725509-T-G ***
13821759-A-G 11701053-A-G ***
28807543-C-G 26661396-C-G ***
13727671-A-G,T 11571995-A-G,T ***
13705124-A-G 11549448-A-G ***
13704311-A-C 11548635-A-C ***
13693855-G-T 11538179-G-T ***
13453593-G-C 11297917-G-C ***
9962877-C-A 10125268-C-A ***
9962875-C-A 10125266-C-A ***
28803167-A-G 26657020-A-G S2017 ***
13455635-A-ATCCAG 11299959-A-ATCCAG ***
28784396-GAGTGGAATGT-G 26638249-GAGTGGAATGT-G ***
26199611-A-ATGTG 24053464-A-ATGTG P1_Y1 17×TG***
13865779-C-CGAATGGAATG 11745073-C-CGAATGGAATG 10×GAATG***
13691561-A-T 11535885-A-T BY211022 ***
9980142-C-A 10142533-C-A ***
13818792-GGAAAC-G 11698086-GGAAAC-G ***
13459346-CATTAT-C 11303670-CATTAT-C ***
13478556-T-C 11322880-T-C ***
13139209-T-C 10628695-T-C ***
26505530-CA-C 24359383-CA-C P1_Y1 11×A***
13846525-GATTCC-G,GAATGG 11725819-GATTCC-G,GAATGG ***
13681046-G-A,T 11525370-G-A,T ***
10035985-C-A 10198376-C-A ***
20213074-C-CT 18051188-C-CT P5_Dst ***
13677638-G-C 11521962-G-C ***
25161288-GA-G 23015141-GA-G g1 15×A***
13846539-A-G 11725833-A-G ***
13846538-T-C 11725832-T-C ***
22269590-C-G 20107704-C-G DYZ19 ***
13458046-A-C 11302370-A-C ***
26238034-CA-C 24091887-CA-C P1_Y1 12×A***
22504988-T-G 20343102-T-G DYZ19 ***
58825079-GCATTC-G 56765762-AAATGG-A 5×CATTC***
28809111-A-T 26662964-A-T BY27892 ***
28804825-A-G 26658678-A-G BY24948 ***
28792548-A-G 26646401-A-G ***
25578671-GT-G 23432524-GT-G P1_gr1 13×T***
24220195-GAA-G 22074048-GAA-G P3_b1 14×A***
22502099-C-G 20340213-C-G DYZ19 ***
13451194-T-C 11295518-T-C ***
22491341-A-T 20329455-A-T DYZ19 ***
22454110-A-G 20292224-A-G DYZ19 ***
22421548-GA-G 20259662-GA-G DYZ19 ***
22421544-G-C 20259658-G-C DYZ19 ***
22421494-G-T 20259608-G-T DYZ19 ***
22295887-A-T 20134001-A-T DYZ19 ***
22295847-A-G 20133961-A-G DYZ19 ***
13459367-T-A 11303691-T-A ***
28800301-G-C 26654154-G-C ***
22269598-G-A 20107712-G-A DYZ19 ***
13680898-A-G 11525222-A-G ***
13853172-T-A 11732466-T-A ***
13862132-A-G 11741426-A-G ***
58979623-A-T 56833476-A-T ***
22269597-C-T 20107711-C-T DYZ19 ***
22269595-T-A 20107709-T-A DYZ19 ***
13680906-G-A 11525230-G-A BY88220 ***
13680899-T-A 11525223-T-A ***
58855330-T-G 56735541-A-C ***
28800302-G-A 26654155-G-A ***
13457417-CTTTCG-C 11301741-CTTTCG-C ***
13865739-C-G 11745033-C-G ***
13402561-G-T 11246885-G-T ***
13138059-A-C,T 10627545-A-C,T ***
10018585-A-ATTCTTTCTTTCTTCT 10180976-A-ATTCTTTCTTTCTTCT 4×TTCT***
58977344-A-ACCATTCCATTCCATT 56831197-A-ACCATTCCATTCCATT 4×CCATT***
28800306-T-C 26654159-T-C ***
22275125-A-C 20113239-A-C BY1924 DYZ19 ***
22266350-A-G 20104464-A-G DYZ19 ***
13459105-CCAGTCGGGTT-C,GCAGTCGGGTT 11303429-CCAGTCGGGTT-C,GCAGTCGGGTT ***
9983698-A-C 10146089-A-C ***
13471418-C-T 11315742-C-T BY188774 ***
13471416-C-T 11315740-C-T S14010 ***
13471068-A-G 11315392-A-G ***
13471061-A-G 11315385-A-G FT60123 ***
13138233-T-C 10627719-T-C ***
10026093-A-C 10188484-A-C ***
10012349-G-C 10174740-G-C ***
9982711-A-T 10145102-A-T ***
13475091-G-A 11319415-G-A ***
9982705-A-G 10145096-A-G ***
9967934-T-C 10130325-T-C ***
9962855-G-T 10125246-G-T ***
9962854-A-G 10125245-A-G ***
9943956-C-A 10106347-C-A ***
13689046-G-A 11533370-G-A MC21BY42527 ***
22337792-C-T 20175906-C-T DYZ19 ***
13471422-G-A 11315746-G-A ***
13476952-A-C 11321276-A-C ***
22260924-G-T 20099038-G-T DYZ19 ***
13727732-G-GT 11572056-G-GT ***
19892868-GT-G 17780988-GT-G P5_Prx 31×T***
13860397-A-G 11739691-A-G ***
13860377-A-G 11739671-A-G ***
13858843-A-T 11738137-A-T ***
13853641-A-C 11732935-A-C ***
13850518-G-A 11729812-G-A ***
13745356-C-A 11589680-C-A ***
13714790-C-G 11559114-C-G ***
13477061-A-G 11321385-A-G ***
13709154-CGCACTGGAAT-C 11553478-CGCACTGGAAT-C ***
13706508-T-G 11550832-T-G BY25126 ***
13706502-C-G 11550826-C-G BY25125 ***
13692590-G-A 11536914-G-A FT199970 ***
13692573-C-T 11536897-C-T BY26269 ***
13488132-G-A 11332456-G-A ***
13488109-C-A 11332433-C-A ***
22228045-A-C,T 20066159-A-C,T DYZ19 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 808051075897279035038006026
Used in age calculations1075897279035038006026
Counts of SNPs2020
Variant counts last updated 2022-09-21 04:17:51.



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