Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > BY3508 > L135 > BY3506

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
18620865-A-T 16508985-A-T BY122660 YY+
14466361-G-A 12345634-G-A BY95924 YY+
7326162-T-C 7458121-T-C FT1580 YY+
15320543-A-C 13208649-A-C FT180302 YY+
22465466-T-C 20303580-T-C Y24874PF1181 DYZ19 +
14150766-C-G 12030060-C-G BY93404 YY+
22263108-G-T 20101222-G-T BY52219 DYZ19 +
14254037-C-A 12133331-C-A BY156425 YY+
21800878-G-A 19638992-G-A BY135528 YY+
14298694-TG-T 12177988-TG-T +
14646534-T-C 12534598-T-C BY96958 YY+
8423519-G-A 8555478-G-A BY72591 YY+
14791518-T-C 12679589-T-C BY97625 YY+
19243467-G-A 17131587-G-A MF5108 YY+
18729350-T-C 16617470-T-C BY123474 YY+
15177302-G-A 13065388-G-A BY100051 YY+
17942972-G-T 15831092-G-T BY118600 YY+
17904542-C-G 15792662-C-G BY118274 YY+
17767967-GA-G 15656087-GA-G 8×A+
15317002-G-A 13205108-G-A BY100789 YY+
8182686-G-A 8314645-G-A ZS9950BY31372 Y63233 YY+
15827602-G-A 13715722-G-A BY104395 YY+
22465947-G-A 20304061-G-A DYZ19 +
23421401-AG-A 21259515-AG-A +
13720448-A-G 11564772-A-G F11033 BY12857 +
8794270-A-G 8926229-A-G BY75939 YY+
13720447-C-A 11564771-C-A +
9892320-C-G 10054711-C-G BY81818 YY+
13454512-A-C 11298836-A-C **
13196474-A-C 11040798-A-C **
27809502-T-A 25663355-T-A P1_Y2 **
27809437-C-A 25663290-C-A P1_Y2 **
23084073-G-A 20922187-G-A CTS11366 **
13800937-A-G 11680231-A-G **
13459368-G-C 11303692-G-C ***
13470655-G-A 11314979-G-A ***
13694098-GAATA-G 11538422-GAATA-G ***
13676535-T-G 11520859-T-G ***
13678254-T-C 11522578-T-C BY88108 ***
13689440-G-A 11533764-G-A ***
13593554-A-G 11437878-A-G ***
13868778-A-G 11748072-A-G ***
13694287-T-A 11538611-T-A BY88842 ***
13810879-G-A 11690173-G-A ***
13861569-T-C 11740863-T-C ***
13860299-GGACTC-G 11739593-GGACTC-G ***
13853415-T-C 11732709-T-C ***
13850466-GGAAA-G 11729760-GGAAA-G ***
13840870-T-G 11720164-T-G ***
13838799-A-T 11718093-A-T ***
13835303-T-TGGAAC 11714597-T-TGGAAC ***
13813966-GGACTC-G 11693260-GGACTC-G ***
13826421-T-G 11705715-T-G ***
13814013-C-A 11693307-C-A 5×ATGGA***
13825331-A-T 11704625-A-T ***
13453593-G-C 11297917-G-C ***
15320634-A-G 13208740-A-G ***
25807649-C-T 23661502-C-T P1_b3 ***
22465910-T-G 20304024-T-G DYZ19 ***
22491325-G-T 20329439-G-T DYZ19 ***
23180914-G-A 21019028-G-A ***
24179857-T-C 22033710-T-C P3_b1 ***
25193954-AT-A 23047807-AT-A g1 10×T***
25285960-T-C 23139813-T-C P2_r1 ***
25524693-CTTT-C 23378546-CTTT-C P1_gr1 33×T***
25897206-CAA-C 23751059-CAA-C P1_Y1 15×A***
22465891-A-C 20304005-A-C DYZ19 ***
25967992-C-T 23821845-C-T P1_Y1 ***
26919683-T-C 24773536-T-C P1_r3 ***
28800311-G-T 26654164-G-T ***
28800318-A-T 26654171-A-T ***
58828358-C-G 56762513-G-C ***
9963465-G-GTC 10125856-G-GTC ***
22421538-G-A,C 20259652-G-A,C DYZ19 ***
13680916-A-G,T 11525240-A-G,T ***
22465905-T-G 20304019-T-G DYZ19 ***
22465874-CA-C,CC 20303988-CA-C,CC DYZ19 ***
15827586-T-C 13715706-T-C ***
22301427-C-T 20139541-C-T FGC78302 DYZ19 ***
17146562-AT-A,AA 15034682-AT-A,AA ***
18275941-C-CG 16164061-C-CG P6_Prx ***
19586695-ATT-A 17474815-ATT-A P5_Prx 22×T***
19809406-G-T 17697526-G-T P5_Prx ***
19978407-C-CCAAAA 17866527-C-CCAAAA P5_Prx ***
21130587-C-CAAATAAAT 18968701-C-CAAATAAAT 11×AAAT***
22227183-G-A 20065297-G-A DYZ19 ***
22274523-T-G 20112637-T-G DYZ19 ***
22337983-T-G 20176097-T-G DYZ19 ***
22465837-G-A 20303951-G-A ZS5188 FGC23372 DYZ19 ***
22337984-A-T 20176098-A-T DYZ19 ***
22360098-G-A 20198212-G-A DYZ19 ***
22360103-A-G 20198217-A-G DYZ19 ***
22360396-TGC-T,TGT 20198510-TGC-T,TGT DYZ19 ***
22421489-C-G 20259603-C-G DYZ19 ***
22421496-G-C 20259610-G-C DYZ19 ***
22421508-T-C 20259622-T-C DYZ19 ***
22465820-A-C 20303934-A-C DYZ19 ***
13312072-T-A 11156396-T-A ***
13138455-T-A 10627941-T-A ***
13312067-T-C 11156391-T-C ***
13488109-C-A 11332433-C-A ***
9983698-A-C 10146089-A-C ***
10012349-G-C 10174740-G-C ***
10026093-A-C 10188484-A-C ***
13456672-A-C 11300996-A-C ***
13471054-G-C 11315378-G-C ***
13471061-A-G 11315385-A-G FT60123 ***
13471068-A-G 11315392-A-G ***
13477061-A-G 11321385-A-G ***
13692659-A-G 11536983-A-G ***
13458046-A-C 11302370-A-C ***
13706502-C-G 11550826-C-G BY25125 ***
13709154-CGCACTGGAAT-C 11553478-CGCACTGGAAT-C ***
13714790-C-G 11559114-C-G ***
13727732-G-GT 11572056-G-GT ***
13853641-A-C 11732935-A-C ***
13858843-A-T 11738137-A-T ***
13860397-A-G 11739691-A-G ***
19892868-GT-G 17780988-GT-G P5_Prx 31×T***
22260924-G-T 20099038-G-T DYZ19 ***
13689046-G-A 11533370-G-A MC21BY42527 ***
13474129-T-C 11318453-T-C ***
22421544-G-C 20259658-G-C DYZ19 ***
13846525-GATTCC-G,GAATGG 11725819-GATTCC-G,GAATGG ***
13705124-A-G 11549448-A-G ***
13727671-A-G,T 11571995-A-G,T ***
13821759-A-G 11701053-A-G ***
13842725-ATGGAG-A 11722019-ATGGAG-A ***
28794498-A-G 26648351-A-G ***
28794500-C-A 26648353-C-A ***
28794510-G-C 26648363-G-C ***
28794514-T-A 26648367-T-A ***
28803167-A-G 26657020-A-G S2017 ***
26199611-A-ATGTG 24053464-A-ATGTG P1_Y1 17×TG***
13817997-T-G 11697291-T-G ***
28784396-GAGTGGAATGT-G 26638249-GAGTGGAATGT-G ***
13453945-C-G 11298269-C-G ***
13860372-A-T 11739666-A-T ***
13860379-G-A 11739673-G-A ***
13799470-G-A 11678764-G-A ***
58912893-T-C,G 56677978-A-C,G ***
13474134-T-A 11318458-T-A ***
13474135-A-G 11318459-A-G ***
13483228-C-G 11327552-C-G ***
22421494-G-T 20259608-G-T DYZ19 ***
22421548-GA-G 20259662-GA-G DYZ19 ***
13194332-C-T 11038656-C-T ***
9967520-T-C 10129911-T-C ***
13654236-A-G 11498560-A-G ***
22454057-A-T 20292171-A-T DYZ19 ***
58828567-C-T 56762304-G-A ***
58854527-T-C 56736344-A-G ***
2824720-A-ACCC 2956679-A-ACCC ***
9937550-G-A 10099941-G-A ***
9940521-C-T 10102912-C-T ***
9963464-G-A 10125855-G-A BY53959 ***
10010897-G-A 10173288-G-A FGC49523 ***
9988101-A-T 10150492-A-T ***
10011019-C-T 10173410-C-T ***
10016061-T-C 10178452-T-C A16964 ***
10020508-A-T 10182899-A-T ***
10025865-G-A 10188256-G-A ***
13138240-C-A 10627726-C-A ***
13138241-C-T 10627727-C-T ***
13138454-A-T 10627940-A-T ***
13704311-A-C 11548635-A-C ***
13138745-C-G 10628231-C-G ***
13486181-G-C 11330505-G-C ***
10015657-C-G 10178048-C-G ***
22454110-A-G 20292224-A-G DYZ19 ***
13457417-CTTTCG-C 11301741-CTTTCG-C ***
22491341-A-T 20329455-A-T DYZ19 ***
22502099-C-G 20340213-C-G DYZ19 ***
24220195-GAA-G 22074048-GAA-G P3_b1 14×A***
25578671-GT-G 23432524-GT-G P1_gr1 13×T***
28792548-A-G 26646401-A-G ***
28804825-A-G 26658678-A-G BY24948 ***
13138059-A-C,T 10627545-A-C,T ***
58855330-T-G 56735541-A-C ***
13694535-T-A 11538859-T-A BY88874 ***
13680898-A-G 11525222-A-G ***
13680899-T-A 11525223-T-A ***
13680906-G-A 11525230-G-A BY88220 ***
58979623-A-T 56833476-A-T ***
13853172-T-A 11732466-T-A ***
13511449-C-A 11355773-C-A ***
13711825-A-T 11556149-A-T ***
13711964-G-A 11556288-G-A ***
22360051-C-G 20198165-C-G DYZ19 ***
13815538-CAATGAAATGA-C,G 11694832-CAATGAAATGA-C,G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 808051075897279035038006026
Used in age calculations1075897279035038006026
Counts of SNPs2020
Variant counts last updated 2020-05-01 02:33:45.

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