Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > M222 > FGC4077 > A725 > 8153153-G-GA > FGC40940

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
QN44Z
Manual
Edits
21555109-G-A 19393223-G-A FGC40950 YY+
5595286-T-C 5727245-T-C FGC40935 +
17532397-C-T 15420517-C-T FGC40944 YY+
4249029-C-A 4380988-C-A FGC40934 +
4226587-G-C 4358546-G-C FGC40933 +
6347446-T-G 6479405-T-G FGC40936 +
18610066-C-T 16498186-C-T FGC40945 YY+
3744303-G-T 3876262-G-T FGC40932 +
6782476-A-T 6914435-A-T FGC40937 YY+
6906117-T-C 7038076-T-C FGC40938 YY+
8331226-C-T 8463185-C-T FGC40941 YY+
15431772-T-A 13319892-T-A Y6716 FGC16202 F11702 YY+
19556698-G-A 17444818-G-A FGC40946 Y+
17446661-G-A 15334781-G-A CTS7373 PF4024 YY+
23087170-C-T 20925284-C-T **
10001195-T-C 10163586-T-C **
27895460-A-T 25749313-A-T P1_Y2 **
17068271-T-G 14956391-T-G **
9674735-CATAA-C 9837126-CATAA-C IR3_Prx **
22692410-T-C 20530524-T-C **
21243033-G-C 19081147-G-C **
16502546-A-T 14390666-A-T **
6347777-G-GGAAGGAAGGAAGGAAA 6479736-G-GGAAGGAAGGAAGGAAA 9×GAAA**
13237282-A-G 11081606-A-G **
5813113-C-T 5945072-C-T **
58998761-T-G 56852614-T-G **
16381381-C-T 14269501-C-T **
5795860-CTTT-C 5927819-CTTT-C 18×T**
58998189-T-C 56852042-T-C **
16381372-T-G 14269492-T-G **
13466464-T-A 11310788-T-A **
13261570-T-C 11105894-T-C **
58856399-T-C 56734472-A-G **
16319423-A-G 14207543-A-G **
5462791-G-T 5594750-G-T **
17699645-T-A 15587765-T-A **
24490613-C-T 22344466-C-T **
18230186-G-A 16118306-G-A **
23063697-CTTTT-C 20901811-CTTTT-C **
8177601-C-A 8309560-C-A **
7142433-C-T 7274392-C-T **
13392858-A-C 11237182-A-C **
13354609-C-A 11198933-C-A **
20989104-TACACACACACAC-T 18827218-TACACACACACAC-T P4_Dst 25×AC**
13314669-T-A 11158993-T-A **
28750508-G-A 26604361-G-A **
28760889-T-C 26614742-T-C **
28478038-T-TATAG 26331891-T-TATAG 23×AG**
7717569-A-ACTTTCCTTTC 7849528-A-ACTTTCCTTTC 12×CTTTC**
25530444-G-A 23384297-G-A P1_gr1 **
18230337-T-A 16118457-T-A **
22782756-G-A 20620870-G-A Y1120 **
18230333-A-G 16118453-A-G **
18230221-T-G 16118341-T-G **
13306805-A-C 11151129-A-C **
22982116-A-T 20820230-A-T ***
22480990-G-A 20319104-G-A DYZ19 ***
23325327-A-C 21163441-A-C ***
22366610-T-A 20204724-T-A DYZ19 ***
22502971-T-C 20341085-T-C DYZ19 ***
22481024-A-C 20319138-A-C DYZ19 ***
22481126-A-C 20319240-A-C DYZ19 ***
22499052-T-G 20337166-T-G DYZ19 ***
22779549-G-T 20617663-G-T ***
22502944-A-T 20341058-A-T DYZ19 ***
22502969-C-T 20341083-C-T DYZ19 ***
22668547-T-C 20506661-T-C ***
22644465-C-G 20482579-C-G ***
22502986-A-G 20341100-A-G DYZ19 ***
23516981-C-G 21355095-C-G ***
22481135-A-T 20319249-A-T DYZ19 ***
9296073-C-G 9458464-C-G ***
23696608-G-A 21534722-G-A ***
24991923-T-C 22845776-T-C g1 ***
25628569-C-T 23482422-C-T P1_b3 ***
25625078-G-A 23478931-G-A P1_b3 ***
25466221-T-G 23320074-T-G P2_r2 ***
25422143-C-T 23275996-C-T P2_r2 ***
25422116-G-A 23275969-G-A P2_r2 ***
25422107-G-A 23275960-G-A P2_r2 ***
25356253-A-G 23210106-A-G P2_r2 ***
25309272-C-T 23163125-C-T P2_r1 ***
25246623-A-C 23100476-A-C P2_r1 ***
25176203-C-T 23030056-C-T g1 ***
24995953-C-T 22849806-C-T g1 ***
24992185-T-G 22846038-T-G g1 ***
24931461-G-C 22785314-G-C g1 ***
24044473-A-T 21898326-A-T ***
24768680-C-A 22622533-C-A P3_b2 ***
24660074-G-T 22513927-G-T P3_b2 ***
24614399-C-A 22468252-C-A P3_t2 ***
24579722-T-A 22433575-T-A P3_t2 ***
24537185-T-C 22391038-T-C P3_t2 ***
24536719-G-A 22390572-G-A P3_t2 ***
22366143-T-A 20204257-T-A DYZ19 ***
24373699-C-G 22227552-C-G ***
24326842-T-C 22180695-T-C P3_t1 ***
24243162-G-T 22097015-G-T P3_b1 ***
24218493-C-T 22072346-C-T P3_b1 ***
24183028-C-A 22036881-C-A P3_b1 ***
22366146-G-C 20204260-G-C DYZ19 ***
22283209-C-T 20121323-C-T DYZ19 ***
22361481-A-G 20199595-A-G DYZ19 ***
20142111-G-T 18030231-G-T P5_Dst ***
20596883-T-C 18434997-T-C P5_Dst ***
20569613-T-A 18407727-T-A P5_Dst ***
20534081-T-A 18372195-T-A P5_Dst 14×A***
20472578-C-A 18310692-C-A P5_Dst ***
20426197-C-T 18264311-C-T P5_Dst ***
20364550-A-T 18202664-A-T P5_Dst ***
20332095-G-A 18170209-G-A P5_Dst ***
20326115-C-T 18164229-C-T P5_Dst ***
20326081-A-T 18164195-A-T P5_Dst ***
20301842-C-T 18139956-C-T P5_Dst ***
20252774-G-T 18090888-G-T P5_Dst ***
20252745-G-A 18090859-G-A P5_Dst ***
20142113-G-T 18030233-G-T P5_Dst ***
20127072-C-G 18015192-C-G P5_Dst ***
20734446-C-A 18572560-C-A P4_Prx ***
20084563-A-G 17972683-A-G P5_Dst ***
20047260-A-T 17935380-A-T P5_Prx ***
19967559-C-A 17855679-C-A P5_Prx ***
19874132-A-T 17762252-A-T P5_Prx ***
19758647-C-T 17646767-C-T P5_Prx ***
19753997-A-C 17642117-A-C P5_Prx ***
19753437-C-T 17641557-C-T P5_Prx ***
19643063-C-A 17531183-C-A P5_Prx ***
19618751-A-G 17506871-A-G P5_Prx ***
19582829-G-T 17470949-G-T P5_Prx ***
19520813-G-A 17408933-G-A ***
19437146-G-T 17325266-G-T ***
19340017-T-C 17228137-T-C ***
19329631-T-A 17217751-T-A ***
20673826-G-A 18511940-G-A P4_Prx ***
20756167-T-C 18594281-T-C P4_Prx ***
22361476-G-A 20199590-G-A DYZ19 ***
22283177-G-T 20121291-G-T DYZ19 ***
22361454-A-G 20199568-A-G DYZ19 ***
22361448-C-T 20199562-C-T DYZ19 ***
22361447-A-C 20199561-A-C DYZ19 ***
22359927-A-G 20198041-A-G DYZ19 ***
22357721-T-G 20195835-T-G DYZ19 ***
22353028-C-A 20191142-C-A DYZ19 ***
22352762-A-T 20190876-A-T DYZ19 ***
22347034-A-G 20185148-A-G DYZ19 ***
22346999-A-C 20185113-A-C DYZ19 ***
22341493-G-A 20179607-G-A DYZ19 ***
22328302-G-A 20166416-G-A DYZ19 ***
22313288-A-T 20151402-A-T DYZ19 ***
22283243-A-G 20121357-A-G DYZ19 ***
25717387-G-T 23571240-G-T P1_b3 ***
22248521-G-C 20086635-G-C DYZ19 ***
20889112-T-G 18727226-T-G P4_Dst ***
22248431-C-A 20086545-C-A DYZ19 ***
22234775-T-A 20072889-T-A DYZ19 ***
22228031-C-A 20066145-C-A DYZ19 ***
22166581-C-T 20004695-C-T ***
21944898-G-A 19783012-G-A ***
21744882-G-A 19582996-G-A ***
21635026-C-T 19473140-C-T ***
21574749-A-C 19412863-A-C ***
21558714-A-T 19396828-A-T ***
21386678-G-T 19224792-G-T ***
21271952-T-C 19110066-T-C ***
21196975-G-A 19035089-G-A ***
21068360-G-T 18906474-G-T ***
20909833-T-A 18747947-T-A P4_Dst ***
25628817-C-T 23482670-C-T P1_b3 ***
26309026-A-T 24162879-A-T P1_Y1 ***
25717430-T-A 23571283-T-A P1_b3 ***
5797434-G-GATAT 5929393-G-GATAT 21×AT***
8125044-G-GAAAA 8257003-G-GAAAA ***
8125024-G-GAAAA 8256983-G-GAAAA ***
7532276-GTATATATATATATATATATATATATATATA-G 7664235-GTATATATATATATATATATATATATATATA-G 28×TA***
7275188-TAAAAAAA-T 7407147-TAAAAAAA-T 20×A***
5936159-GATAT-G 6068118-GATAT-G 19×AT***
5806936-TA-T 5938895-TA-T ***
5659707-GTA-G 5791666-GTA-G 28×TA***
4887611-TCAAAA-T 5019570-TCAAAA-T ***
4277201-CTTTT-C 4409160-CTTTT-C 20×T***
3641036-C-CCTTTCCTTTT 3772995-C-CCTTTCCTTTT ***
8075936-CTT-C 8207895-CTT-C 17×T***
22358786-GT-TC 20196900-GT-TC DYZ19 ***
17466767-GGA-G 15354887-GGA-G ***
22189232-AAC-A 20027346-AAC-A ***
22997012-T-ATATA 20835126-T-ATATA ***
13347219-A-AT 11191543-A-AT 13×T***
58979841-A-C 56833694-A-C ***
58912864-A-T 56678007-T-A ***
58903455-C-T 56687416-G-A ***
58887282-G-T 56703589-C-A ***
58881391-C-A 56709480-G-T ***
58875864-C-T 56715007-G-A ***
58875723-T-C 56715148-A-G ***
58860362-A-T 56730509-T-A ***
58860330-G-T 56730541-C-A ***
58858781-C-T 56732090-G-A ***
58858760-A-T 56732111-T-A ***
58854799-A-G 56736072-T-C ***
58854790-T-C 56736081-A-G ***
58845001-C-T 56745870-G-A ***
10013177-CGG-TGT 10175568-CGG-TGT ***
13460958-CG-AT 11305282-CG-AT ***
58839189-T-C 56751682-A-G ***
18767670-GT-G 16655790-GT-G 8×T***
58986062-ACACG-TCACT 56839915-ACACG-TCACT ***
58843097-GGCG-TGCC 56747771-CGCC-GGCA ***
58821799-GGC-TGT 56769070-GCC-ACA ***
25422146-GTG-TTT 23275999-GTG-TTT P2_r2 ***
23316028-A-ATTTT 21154142-A-ATTTT ***
22504964-ATTTT-GTTTG 20343078-ATTTT-GTTTG DYZ19 ***
22502986-AGTGTCTT-GGTTTCTG 20341100-AGTGTCTT-GGTTTCTG DYZ19 ***
22502969-CCT-TCC 20341083-CCT-TCC DYZ19 ***
22366143-TCAGATGC-ACACATGT 20204257-TCAGATGC-ACACATGT DYZ19 ***
22295751-GATATGT-TATGTGG 20133865-GATATGT-TATGTGG DYZ19 ***
22263664-GTTAC-TTTAA 20101778-GTTAC-TTTAA DYZ19 ***
22241265-AA-TG 20079379-AA-TG DYZ19 ***
22234774-AT-CA 20072888-AT-CA DYZ19 ***
20937050-A-AT 18775164-A-AT P4_Dst 14×T***
18475427-AG-GT 16363547-AG-GT P6_Dst ***
13460980-TCG-GCA 11305304-TCG-GCA ***
18475408-TAAAGAGA-CAAATAGT 16363528-TAAAGAGA-CAAATAGT P6_Dst ***
18475343-CATAT-AATAG 16363463-CATAT-AATAG P6_Dst ***
18468353-GA-G 16356473-GA-G P6_Dst 13×A***
18230333-ATTAT-GTTAA 16118453-ATTAT-GTTAA ***
17441215-TAC-T 15329335-TAC-T ***
15293538-TGAT-CAAC 13181637-TGAT-CAAC ***
14698457-TCAAAAA-T 12586523-TCAAAAA-T ***
13737573-CAATGGAATGGAGT-GAGTGGAATGGAGC 11581897-CAATGGAATGGAGT-GAGTGGAATGGAGC ***
13726590-T-AATGGA 11570914-T-AATGGA ***
13489129-CTC-ATT 11333453-CTC-ATT ***
13462741-AAAC-TAAT 11307065-AAAC-TAAT ***
13461160-CC-AG 11305484-CC-AG ***
13461146-AAAGA-CAAGG 11305470-AAAGA-CAAGG ***
13460993-GTAGGC-CTAGTT 11305317-GTAGGC-CTAGTT ***
58840817-A-G 56750054-T-C ***
58835199-T-G 56755672-A-C ***
25841094-A-C 23694947-A-C P1_b3 ***
26376367-T-G 24230220-T-G P1_Y1 ***
27161897-C-A 25015750-C-A P1_g3 ***
27161621-T-A 25015474-T-A P1_g3 ***
27131921-G-C 24985774-G-C P1_g3 ***
27077274-A-T 24931127-A-T P1_r4 ***
27022746-A-T 24876599-A-T P1_r4 ***
26991332-G-A 24845185-G-A P1_r4 ***
26906666-T-A 24760519-T-A P1_r3 ***
26834020-C-T 24687873-C-T P1_g2 ***
26687061-A-G 24540914-A-G P1_g2 ***
26658677-C-T 24512530-C-T P1_g2 ***
26616706-G-T 24470559-G-T P1_g2 ***
26564146-G-T 24417999-G-T P1_g2 ***
26438447-A-G 24292300-A-G P1_Y1 ***
26376466-T-C 24230319-T-C P1_Y1 ***
26369318-C-G 24223171-C-G P1_Y1 ***
27259559-T-A 25113412-T-A P1_g3 ***
26346470-C-A 24200323-C-A P1_Y1 ***
26311070-A-T 24164923-A-T P1_Y1 ***
26310724-G-T 24164577-G-T P1_Y1 ***
26291853-G-T 24145706-G-T P1_Y1 ***
26261783-A-T 24115636-A-T P1_Y1 ***
26169906-C-A 24023759-C-A P1_Y1 ***
26149051-A-T 24002904-A-T P1_Y1 ***
26121700-C-T 23975553-C-T P1_Y1 ***
25996961-G-A 23850814-G-A P1_Y1 ***
25981200-G-A 23835053-G-A P1_Y1 ***
25957645-G-T 23811498-G-T P1_Y1 ***
25955365-C-T 23809218-C-T P1_Y1 ***
25944983-A-C 23798836-A-C P1_Y1 ***
25942487-A-T 23796340-A-T P1_Y1 ***
27161947-T-A 25015800-T-A P1_g3 ***
27262622-A-C 25116475-A-C P1_g3 ***
58835057-A-C 56755814-T-G ***
28021940-G-T 25875793-G-T P1_Y2 ***
58831183-C-A 56759688-G-T ***
28766314-T-A 26620167-T-A ***
28675924-G-T 26529777-G-T ***
28451734-A-T 26305587-A-T P1_gr2 ***
28442662-G-T 26296515-G-T P1_gr2 ***
28438130-C-G 26291983-C-G P1_gr2 ***
28356225-G-T 26210078-G-T P1_gr2 ***
28207372-T-C 26061225-T-C P1_b4 ***
28137074-G-T 25990927-G-T P1_b4 ***
28136815-T-A 25990668-T-A P1_b4 ***
28122986-C-T 25976839-C-T P1_b4 ***
28091051-T-G 25944904-T-G P1_Y2 ***
28081259-C-A 25935112-C-A P1_Y2 ***
28033274-A-G 25887127-A-G P1_Y2 ***
27964444-C-T 25818297-C-T P1_Y2 ***
27302584-C-T 25156437-C-T P1_g3 ***
27546170-A-G 25400023-A-G P1_Y2 ***
27304455-T-A 25158308-T-A P1_g3 ***
27317998-A-T 25171851-A-T P1_g3 ***
27332582-G-A 25186435-G-A P1_g3 ***
27430134-T-G 25283987-T-G P1_g3 ***
27454800-C-T 25308653-C-T P1_Y2 ***
27499244-T-G 25353097-T-G P1_Y2 ***
27734457-A-C 25588310-A-C P1_Y2 ***
27916311-C-A 25770164-C-A P1_Y2 ***
27783563-G-T 25637416-G-T P1_Y2 ***
27792195-T-A 25646048-T-A P1_Y2 ***
27792239-T-G 25646092-T-G P1_Y2 ***
27822659-C-T 25676512-C-T P1_Y2 ***
27842924-C-T 25696777-C-T P1_Y2 ***
27848665-G-A 25702518-G-A P1_Y2 ***
19000932-T-G 16889052-T-G ***
18345855-G-T 16233975-G-T P6_Prx ***
18580098-T-C 16468218-T-C ***
22251480-A-C 20089594-A-C DYZ19 ***
4292315-G-T 4424274-G-T ***
4228413-A-T 4360372-A-T ***
3809540-A-C 3941499-A-C ***
3312942-A-T 3444901-A-T ***
3271031-C-T 3402990-C-T ***
2772511-T-C 2904470-T-C ***
2674386-G-A 2806345-G-A ***
13460688-G-A 11305012-G-A ***
13485422-C-G 11329746-C-G ***
22499199-C-G 20337313-C-G DYZ19 ***
13462782-G-C 11307106-G-C ***
2855396-A-G 2987355-A-G ***
22252531-T-G 20090645-T-G DYZ19 ***
19329659-C-T 17217779-C-T YP467 ***
4439178-G-C 4571137-G-C ***
22266567-C-A 20104681-C-A DYZ19 ***
22241256-T-C 20079370-T-C DYZ19 ***
6592268-G-A 6724227-G-A ***
6014979-G-A 6146938-G-A ***
13529716-C-T 11374040-C-T ***
58860156-A-T 56730715-T-A ***
6015015-G-A 6146974-G-A ***
58986219-TT-CAA 56840072-TT-CAA ***
22241243-GA-AC 20079357-GA-AC DYZ19 ***
58986453-C-T 56840306-C-T ***
25717443-G-A 23571296-G-A P1_b3 ***
22358394-A-T 20196508-A-T DYZ19 ***
22358366-G-T 20196480-G-T DYZ19 ***
13470560-G-C 11314884-G-C ***
4428808-T-C 4560767-T-C ***
4641726-G-A 4773685-G-A ***
22311205-CC-AA 20149319-CC-AA DYZ19 ***
5811304-G-T 5943263-G-T ***
6208576-C-A 6340535-C-A IR3_Dst ***
6202417-C-A 6334376-C-A IR3_Dst ***
6202406-T-C 6334365-T-C IR3_Dst ***
6181827-A-T 6313786-A-T IR3_Dst ***
6179735-G-T 6311694-G-T IR3_Dst ***
6160761-C-T 6292720-C-T IR3_Dst ***
6117140-C-T 6249099-C-T FGC70276 ***
6014998-T-A 6146957-T-A ***
6014908-A-G 6146867-A-G ***
6014894-G-A 6146853-G-A ***
6014864-C-T 6146823-C-T ***
6014847-G-A 6146806-G-A ***
6014823-A-G 6146782-A-G ***
5430720-T-G 5562679-T-G ***
4763432-G-C 4895391-G-C ***
5427921-C-T 5559880-C-T ***
5394595-A-G 5526554-A-G ***
5346022-A-C 5477981-A-C ***
5241317-T-C 5373276-T-C ***
5235821-A-T 5367780-A-T ***
5209941-T-A 5341900-T-A ***
5208190-T-G 5340149-T-G ***
5148763-C-A 5280722-C-A ***
5113677-T-A 5245636-T-A ***
5113052-C-T 5245011-C-T ***
5098694-A-T 5230653-A-T ***
4869043-C-T 5001002-C-T ***
4848614-C-T 4980573-C-T ***
4817486-G-A 4949445-G-A ***
22311214-GTGTGCAGAG-TTCTCCTGAC 20149328-GTGTGCAGAG-TTCTCCTGAC DYZ19 ***
58858734-T-A 56732137-A-T ***
6494987-G-A 6626946-G-A ***
58986094-T-A 56839947-T-A ***
9429477-TAATA-T 9591868-TAATA-T ***
4005057-G-GT 4137016-G-GT 13×T***
22503119-T-C 20341233-T-C DYZ19 ***
22503118-G-T 20341232-G-T DYZ19 ***
58879555-A-G 56711316-T-C ***
22251364-A-T 20089478-A-T PF1110 DYZ19 ***
22251344-T-A 20089458-T-A BY25026 DYZ19 ***
22324759-A-T 20162873-A-T DYZ19 ***
22224527-C-A 20062641-C-A DYZ19 ***
13487791-T-C 11332115-T-C ***
22503118-GT-TC 20341232-GT-TC DYZ19 ***
22093166-T-TTG 19931280-T-TTG 22×TG***
58884357-C-T 56706514-G-A ***
13489055-T-A 11333379-T-A ***
13462744-C-T 11307068-C-T ***
58880737-C-T 56710134-G-A ***
58844610-C-G 56746261-G-C ***
22357700-T-A 20195814-T-A DYZ19 ***
28691447-CA-C 26545300-CA-C 16×A***
19690156-TAAATAAAATA-T 17578276-TAAATAAAATA-T P5_Prx 12×AAATA***
58884288-C-T 56706583-G-A ***
26538252-CA-C 24392105-CA-C P1_g2 17×A***
6432160-GA-G 6564119-GA-G 11×A***
19436672-A-AAAAG 17324792-A-AAAAG 17×AAAG***
58843030-GATTCCATTCCATTCT-G 56747815-AGGAATGGAATAGAAT-A ***
22357720-G-T 20195834-G-T DYZ19 ***
27232111-TTTTCTTTCTTTC-T 25085964-TTTTCTTTCTTTC-T P1_g3 18×TTTC***
13489056-C-A 11333380-C-A ***
25246398-TCTC-T 23100251-TCTC-T P2_r1 6×CTC***
13242372-G-C 11086696-G-C ***
13470538-G-A 11314862-G-A ***
58884859-T-G 56706012-A-C ***
13489131-C-T 11333455-C-T ***
22481328-TTTAGG-GTTATA 20319442-TTTAGG-GTTATA DYZ19 ***
27971568-T-A 25825421-T-A P1_Y2 ***
24646615-C-T 22500468-C-T P3_b2 ***
13489221-G-C 11333545-G-C ***
13489023-G-T 11333347-G-T ***
58986347-G-A 56840200-G-A ***
25717408-T-A 23571261-T-A P1_b3 ***
13489680-C-T 11334004-C-T ***
24513426-G-A 22367279-G-A ***
13606877-C-A 11451201-C-A 25×A***
13489500-A-C 11333824-A-C ***
13489495-C-A 11333819-C-A ***
58986236-A-G 56840089-A-G ***
58866388-C-T 56724483-G-A ***
13265530-G-T 11109854-G-T ***
13936212-G-GAAAA 11815506-G-GAAAA ***
13262170-T-C 11106494-T-C ***
19319834-GTATATA-G 17207954-GTATATA-G 23×TA***
7532276-GTA-G 7664235-GTA-G 28×TA***
58860368-C-T 56730503-G-A ***
25985761-G-T 23839614-G-T P1_Y1 ***
3313079-T-G 3445038-T-G ***
13489528-CCGC-GCGA 11333852-CCGC-GCGA ***
58879543-T-G 56711328-A-C ***
4517054-GA-G 4649013-GA-G 15×A***
58986220-T-A 56840073-T-A ***
22266540-T-C 20104654-T-C DYZ19 ***
58986277-T-G 56840130-T-G ***
28522769-C-T 26376622-C-T ***
19049508-A-ATAT 16937628-A-ATAT ***
6492953-A-G 6624912-A-G FGC75738 ***
6507486-A-C 6639445-A-C ***
18524983-A-G 16413103-A-G P6_Dst ***
13728330-G-C 11572654-G-C ***
15958442-T-A 13846562-T-A ***
15889366-T-C 13777486-T-C ***
15244529-T-C 13132615-T-C ***
15231676-C-T 13119762-C-T ***
15102171-T-A 12990259-T-A ***
14695988-G-C 12584054-G-C ***
14632162-T-C 12520231-T-C ***
14532696-T-C 12420897-T-C ***
14251490-A-T 12130784-A-T ***
14132882-A-T 12012176-A-T ***
13923558-A-T 11802852-A-T 20×AT***
13923556-A-T 11802850-A-T ***
13878288-T-C 11757582-T-C ***
13728044-T-A 11572368-T-A ***
16344839-C-T 14232959-C-T ***
13606834-C-G 11451158-C-G ***
13596941-A-G 11441265-A-G FGC50948 ***
13583679-A-G 11428003-A-G ***
13548640-C-T 11392964-C-T ***
13489700-C-A 11334024-C-A ***
13489488-G-A 11333812-G-A ***
13489188-G-T 11333512-G-T ***
13489152-G-A 11333476-G-A ***
13489144-G-C 11333468-G-C ***
13487740-C-T 11332064-C-T ***
13477417-A-T 11321741-A-T ***
13477042-T-G 11321366-T-G ***
13474834-G-T 11319158-G-T ***
13470537-A-C 11314861-A-C ***
16135492-C-T 14023612-C-T P8_Dst ***
16398338-G-A 14286458-G-A ***
13462755-G-T 11307079-G-T ***
18475376-T-C 16363496-T-C P6_Dst ***
18524963-T-G 16413083-T-G P6_Dst ***
18521036-G-T 16409156-G-T P6_Dst ***
18519889-A-C 16408009-A-C P6_Dst ***
18518023-A-G 16406143-A-G P6_Dst ***
18491375-T-C 16379495-T-C P6_Dst ***
18475435-T-G 16363555-T-G P6_Dst ***
18475428-G-T 16363548-G-T P6_Dst ***
18475427-A-G 16363547-A-G P6_Dst ***
18475415-A-T 16363535-A-T P6_Dst ***
18475412-G-T 16363532-G-T P6_Dst ***
18475408-T-C 16363528-T-C P6_Dst ***
18475403-T-C 16363523-T-C P6_Dst ***
18475385-A-G 16363505-A-G P6_Dst ***
18475352-T-C 16363472-T-C P6_Dst ***
16500635-A-G 14388755-A-G ***
18475347-T-G 16363467-T-G P6_Dst ***
18475343-C-A 16363463-C-A P6_Dst ***
18441863-T-G 16329983-T-G P6_Dst ***
22273575-T-G 20111689-T-G DYZ19 ***
18318109-G-T 16206229-G-T P6_Prx ***
18292370-C-A 16180490-C-A P6_Prx ***
18288218-C-A 16176338-C-A P6_Prx ***
18287168-C-T 16175288-C-T P6_Prx ***
17724519-A-T 15612639-A-T ***
17523618-A-G 15411738-A-G ***
17458964-C-G 15347084-C-G ***
17338189-T-A 15226309-T-A ***
16701083-C-A 14589203-C-A ***
16678399-A-T 14566519-A-T ***
13462761-C-G 11307085-C-G ***
13462741-A-T 11307065-A-T ***
6559824-C-T 6691783-C-T ***
7924742-A-C 8056701-A-C ***
9338525-A-T 9500916-A-T ***
9316429-G-A 9478820-G-A ***
9214582-G-C 9376973-G-C ***
9202243-A-G 9364634-A-G ***
9191052-G-C 9353443-G-C ***
9063605-G-T 9225996-G-T ***
9040848-G-A 9203239-G-A ***
9034282-T-A 9196673-T-A ***
9034270-C-T 9196661-C-T ***
8972343-A-C 9134734-A-C ***
8901190-C-T 9033149-C-T ***
8371630-T-A 8503589-T-A ***
8216568-C-A 8348527-C-A ***
7924628-T-A 8056587-T-A ***
9430318-A-G 9592709-A-G ***
7896833-T-C 8028792-T-C ***
7885956-C-A 8017915-C-A ***
7709775-A-T 7841734-A-T ***
7573141-T-A 7705100-T-A ***
7567960-G-T 7699919-G-T ***
7567915-C-T 7699874-C-T ***
7567908-A-G 7699867-A-G ***
7417984-G-T 7549943-G-T ***
7395034-G-A 7526993-G-A ***
6998455-A-C 7130414-A-C ***
6750075-T-C 6882034-T-C ***
6683306-G-A 6815265-G-A ***
6683284-T-A 6815243-T-A ***
6592264-A-C 6724223-A-C ***
9427705-G-A 9590096-G-A ***
9434071-A-C 9596462-A-C ***
13462711-C-A 11307035-C-A ***
13254187-A-C 11098511-A-C ***
13461179-G-A 11305503-G-A ***
13461161-C-G 11305485-C-G ***
13461111-G-T 11305435-G-T ***
13461104-G-C 11305428-G-C ***
13461083-G-A 11305407-G-A ***
13461022-A-T 11305346-A-T ***
13460973-A-G 11305297-A-G ***
13460959-G-T 11305283-G-T ***
13341652-C-T 11185976-C-T ***
13311156-T-C 11155480-T-C ***
13267494-G-T 11111818-G-T ***
13257368-G-A 11101692-G-A ***
13257332-T-C 11101656-T-C ***
13254243-T-C 11098567-T-C ***
13253747-G-A 11098071-G-A ***
9587161-A-T 9749552-A-T IR3_Prx ***
13253230-A-C 11097554-A-C ***
13253219-T-C 11097543-T-C ***
13223240-A-G 11067564-A-G ***
13223193-A-G 11067517-A-G ***
10058100-A-T 10220491-A-T ***
10058096-A-G 10220487-A-G ***
10058089-A-C 10220480-A-C ***
10025313-A-G 10187704-A-G ***
9935956-A-G 10098347-A-G ***
9670193-A-T 9832584-A-T IR3_Prx ***
9668289-G-T 9830680-G-T IR3_Prx ***
9664772-G-A 9827163-G-A IR3_Prx ***
9620146-T-A 9782537-T-A IR3_Prx ***
9610922-A-T 9773313-A-T IR3_Prx ***
58986545-CTG-TTC 56840398-CTG-TTC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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