Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > Z2956 > M222 > Z2959 > Z46375 > BY35297 > FGC4087 > A725 > BY18044 > FGC42641 > FGC42640

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
GNSTN
3895898-G-T 4027857-G-T FGC42638 +
4657816-C-T 4789775-C-T FGC42639 +
28080918-G-C 25934771-G-C FGC42656 P1_Y2 *
58862765-A-G 56728106-T-C **
26204854-T-A 24058707-T-A FGC15632 P1_Y1 **
13466740-C-A 11311064-C-A BY85747 **
14121521-G-A 12000815-G-A **
14391129-G-T 12270425-G-T **
14656131-C-G 12544196-C-G **
15278880-T-C 13166979-T-C **
15856572-T-C 13744692-T-C **
16024252-T-C 13912372-T-C **
16322910-G-T 14211030-G-T **
16352454-C-A 14240574-C-A **
16978862-C-A 14866982-C-A **
17025770-G-T 14913890-G-T **
18727638-G-T 16615758-G-T **
18727668-G-T 16615788-G-T FT283229 **
24387386-C-T 22241239-C-T FGC71339 **
24387404-A-G 22241257-A-G **
58986184-C-G 56840037-C-G **
15645178-GTTT-G 13533298-GTTT-G **
19319834-G-GTATA 17207954-G-GTATA 23×TA**
21421790-GA-G 19259904-GA-G **
24387347-CATAT-C 22241200-CATAT-C **
22287090-TA-T 20125204-TA-T DYZ19 ***
15491536-C-CA 13379656-C-CA ***
13488439-TG-CA 11332763-TG-CA ***
25200983-GAAGGAAGA-G 23054836-GAAGGAAGA-G g1 ***
22341971-A-T 20180085-A-T DYZ19 ***
22248537-T-A 20086651-T-A DYZ19 ***
22349435-C-G 20187549-C-G FGC15913 DYZ19 ***
24388091-T-TAA 22241944-T-TAA ***
22481326-G-C 20319440-G-C DYZ19 ***
26262523-T-C 24116376-T-C P1_Y1 ***
26538885-T-A 24392738-T-A P1_g2 ***
22309078-G-A 20147192-G-A DYZ19 ***
22330090-T-G 20168204-T-G DYZ19 ***
14610673-A-C 12498875-A-C ***
22358609-A-C 20196723-A-C DYZ19 ***
13471960-CGCC-TGCT 11316284-CGCC-TGCT ***
13471969-CACTG-AACCA 11316293-CACTG-AACCA ***
22274188-G-T 20112302-G-T DYZ19 ***
4848382-ATG-A 4980341-ATG-A ***
6040788-G-GAA 6172747-G-GAA ***
7545014-G-GC 7676973-G-GC ***
9429479-AT-A 9591870-AT-A ***
15557157-ATATATT-A 13445277-ATATATT-A ***
22237258-G-A 20075372-G-A DYZ19 ***
22237270-A-C 20075384-A-C DYZ19 ***
22237289-A-C 20075403-A-C DYZ19 ***
26465969-T-A 24319822-T-A P1_Y1 ***
6903421-G-C 7035380-G-C ***
22450153-A-C 20288267-A-C DYZ19 ***
26024841-G-C 23878694-G-C GG046 P1_Y1 ***
22330453-G-T 20168567-G-T DYZ19 ***
22356884-T-A 20194998-T-A DYZ19 ***
22237153-A-T 20075267-A-T DYZ19 ***
8481197-T-A 8613156-T-A FT345691 ***
13262097-A-G 11106421-A-G ***
13383095-T-G 11227419-T-G ***
16978870-C-T 14866990-C-T Z9322 ***
20084533-G-T 17972653-G-T P5_Dst ***
20084534-G-T 17972654-G-T P5_Dst ***
22503322-G-A 20341436-G-A DYZ19 ***
58876310-C-T 56714561-G-A ***
22262577-ATGT-GTGC 20100691-ATGT-GTGC DYZ19 ***
22297134-C-T 20135248-C-T DYZ19 ***
28022799-T-G 25876652-T-G P1_Y2 ***
13478281-ATCCG-CTCCT 11322605-ATCCG-CTCCT ***
15047301-T-TA 12935392-T-TA ***
22356760-GTCCATCACATA-TTCCTTCAGATG 20194874-GTCCATCACATA-TTCCTTCAGATG DYZ19 ***
22366592-T-C 20204706-T-C DYZ19 ***
26170527-GGAA-G 24024380-GGAA-G P1_Y1 23×GAA***
6196837-G-A 6328796-G-A IR3_Dst ***
22341930-T-C 20180044-T-C DYZ19 ***
22422749-G-T 20260863-G-T DYZ19 ***
24388082-A-ATT 22241935-A-ATT ***
22189214-G-A 20027328-G-A ***
22341368-G-A 20179482-G-A DYZ19 ***
22348874-A-T 20186988-A-T DYZ19 ***
13489725-C-T 11334049-C-T ***
22330382-G-C 20168496-G-C DYZ19 ***
22252530-T-G 20090644-T-G BY43693 DYZ19 ***
13813881-C-G 11693175-C-G ***
58837227-G-A 56753644-C-T ***
22777146-C-T 20615260-C-T ***
27483079-T-C 25336932-T-C P1_Y2 ***
58874004-A-C 56716867-T-G ***
5107325-T-A 5239284-T-A ***
2674448-T-G 2806407-T-G ***
2674597-C-A 2806556-C-A ***
3167013-G-A 3298972-G-A ***
3207279-A-C 3339238-A-C ***
3312175-A-G 3444134-A-G ***
3461923-C-T 3593882-C-T ***
3495467-G-T 3627426-G-T ***
3548701-G-C 3680660-G-C ***
3576229-A-G 3708188-A-G ***
3603646-C-A 3735605-C-A ***
3603659-G-A 3735618-G-A ***
3634304-T-G 3766263-T-G ***
3785724-G-C 3917683-G-C ***
4020170-A-C 4152129-A-C ***
4020176-T-A 4152135-T-A ***
4020184-G-T 4152143-G-T ***
4020185-T-C 4152144-T-C ***
4020192-G-C 4152151-G-C ***
4020198-T-G 4152157-T-G ***
4020200-A-T 4152159-A-T ***
4020208-T-C 4152167-T-C ***
4020211-T-G 4152170-T-G ***
4020214-A-G 4152173-A-G ***
4020215-T-C 4152174-T-C ***
4020217-A-G 4152176-A-G ***
4020224-T-C 4152183-T-C ***
4224043-G-A 4356002-G-A ***
4228156-G-T 4360115-G-T ***
4331844-G-A 4463803-G-A ***
4822500-G-T 4954459-G-T ***
4914863-T-C 5046822-T-C ***
5107283-G-T 5239242-G-T ***
5107284-T-C 5239243-T-C ***
5107301-C-T 5239260-C-T ***
5107303-T-C 5239262-T-C ***
5107306-A-G 5239265-A-G ***
5107313-G-C 5239272-G-C ***
5196262-T-G 5328221-T-G ***
5196276-G-A 5328235-G-A ***
5806462-T-A 5938421-T-A ***
6040775-G-A 6172734-G-A ***
6155591-T-A 6287550-T-A IR3_Dst ***
6157893-C-T 6289852-C-T IR3_Dst ***
6170980-C-T 6302939-C-T IR3_Dst ***
6178098-A-G 6310057-A-G IR3_Dst ***
6196810-A-G 6328769-A-G IR3_Dst ***
6196829-C-T 6328788-C-T IR3_Dst ***
6196830-A-C 6328789-A-C IR3_Dst ***
6196836-T-C 6328795-T-C IR3_Dst ***
6196868-G-A 6328827-G-A IR3_Dst ***
6196875-T-A 6328834-T-A IR3_Dst ***
6196881-A-T 6328840-A-T IR3_Dst ***
6313134-C-A 6445093-C-A IR3_Dst ***
6597329-G-A 6729288-G-A ***
6903471-G-A 7035430-G-A ***
7060037-C-T 7191996-C-T ***
7142102-T-G 7274061-T-G ***
7440101-T-C 7572060-T-C ***
7443872-T-A 7575831-T-A ***
7491137-C-A 7623096-C-A IR1_L ***
8276490-C-T 8408449-C-T ***
8276493-C-A 8408452-C-A ***
8276506-C-G 8408465-C-G ***
8276534-G-T 8408493-G-T ***
9189547-A-G 9351938-A-G ***
9191051-T-C 9353442-T-C ***
9191071-T-C 9353462-T-C ***
9308523-C-T 9470914-C-T ***
9355206-A-T 9517597-A-T ***
9362310-G-C 9524701-G-C ***
9525924-T-C 9688315-T-C ***
9617365-G-T 9779756-G-T IR3_Prx ***
9673766-A-T 9836157-A-T IR3_Prx ***
9674804-G-T 9837195-G-T IR3_Prx ***
9674825-A-T 9837216-A-T IR3_Prx ***
9699647-C-A 9862038-C-A IR3_Prx ***
9719190-T-C 9881581-T-C IR3_Prx ***
9779313-A-C 9941704-A-C ***
9946368-C-T 10108759-C-T ***
9998165-A-T 10160556-A-T ***
10009178-A-T 10171569-A-T ***
13194521-A-C 11038845-A-C ***
13253137-A-G 11097461-A-G ***
13267644-A-T 11111968-A-T ***
13340625-G-T 11184949-G-T ***
13361655-G-T 11205979-G-T ***
13459591-G-T 11303915-G-T ***
13471198-C-T 11315522-C-T ***
13489607-G-A 11333931-G-A ***
13489743-C-T 11334067-C-T ***
13489765-T-C 11334089-T-C ***
13489769-C-A 11334093-C-A ***
13489771-G-T 11334095-G-T ***
13489804-C-T 11334128-C-T ***
13489819-G-A 11334143-G-A ***
13489898-C-A 11334222-C-A ***
13549076-C-A 11393400-C-A ***
13549177-T-A 11393501-T-A ***
13583737-G-T 11428061-G-T ***
13596465-C-T 11440789-C-T ***
13645509-G-T 11489833-G-T ***
13726699-G-T 11571023-G-T ***
13729784-C-T 11574108-C-T ***
13735703-A-G 11580027-A-G ***
13910256-G-T 11789550-G-T ***
13978820-C-A 11858114-C-A ***
14114177-C-T 11993471-C-T ***
14178677-A-G 12057971-A-G ***
14304196-A-T 12183490-A-T ***
14307179-G-T 12186473-G-T ***
14467331-T-C 12346600-T-C ***
14564755-T-A 12452955-T-A ***
14625046-C-A 12513246-C-A ***
15101471-C-A 12989559-C-A ***
15221291-A-G 13109377-A-G ***
15221308-T-A 13109394-T-A ***
15242818-G-T 13130904-G-T ***
15297333-G-T 13185432-G-T ***
15297349-T-G 13185448-T-G ***
15626596-G-T 13514716-G-T ***
15626626-G-T 13514746-G-T ***
15629354-G-A 13517474-G-A ***
15804018-G-T 13692138-G-T ***
15889263-G-A 13777383-G-A ***
15889434-G-A 13777554-G-A ***
15891808-T-C 13779928-T-C ***
15960471-A-C 13848591-A-C ***
15960760-G-T 13848880-G-T ***
15963222-G-T 13851342-G-T ***
16686835-A-T 14574955-A-T ***
16881557-A-T 14769677-A-T ***
16978873-A-G 14866993-A-G ***
17006286-G-T 14894406-G-T ***
17030650-A-C 14918770-A-C ***
17126212-G-A 15014332-G-A ***
17162335-A-T 15050455-A-T ***
17724229-T-C 15612349-T-C ***
17724235-A-T 15612355-A-T ***
17724248-G-A 15612368-G-A ***
17724266-C-T 15612386-C-T ***
17724267-A-G 15612387-A-G ***
17724273-T-A 15612393-T-A ***
17757235-A-C 15645355-A-C ***
17991092-A-T 15879212-A-T P7_Prx ***
18135572-A-T 16023692-A-T ***
18230358-T-C 16118478-T-C ***
18274707-G-T 16162827-G-T P6_Prx ***
18366960-C-A 16255080-C-A P6_Prx ***
18542569-A-C 16430689-A-C ***
18622793-A-C 16510913-A-C ***
18875517-T-C 16763637-T-C ***
19012901-T-A 16901021-T-A ***
19310723-C-T 17198843-C-T ***
19487356-G-C 17375476-G-C ***
19487374-C-T 17375494-C-T ***
19487412-G-A 17375532-G-A ***
19560889-C-T 17449009-C-T ***
19753431-G-T 17641551-G-T P5_Prx ***
19753483-A-C 17641603-A-C P5_Prx ***
19815974-T-C 17704094-T-C P5_Prx ***
19845514-A-T 17733634-A-T P5_Prx ***
20062497-T-C 17950617-T-C P5_Prx ***
20084536-G-T 17972656-G-T P5_Dst ***
20084893-A-T 17973013-A-T P5_Dst ***
20306729-C-T 18144843-C-T P5_Dst ***
20329994-T-A 18168108-T-A P5_Dst ***
20330945-G-C 18169059-G-C P5_Dst ***
20408273-T-C 18246387-T-C P5_Dst ***
20425318-G-T 18263432-G-T P5_Dst ***
20426452-G-T 18264566-G-T P5_Dst ***
20865944-T-C 18704058-T-C P4_Dst ***
20887947-A-G 18726061-A-G P4_Dst ***
20908822-G-A 18746936-G-A P4_Dst ***
20998190-T-C 18836304-T-C P4_Dst ***
20998263-T-G 18836377-T-G P4_Dst ***
21012759-T-C 18850873-T-C P4_Dst ***
21119620-A-T 18957734-A-T ***
21409196-C-A 19247310-C-A ***
21448017-C-T 19286131-C-T ***
21448202-C-T 19286316-C-T ***
21448275-G-A 19286389-G-A ***
21574072-C-T 19412186-C-T ***
21578220-A-G 19416334-A-G ***
21579442-A-T 19417556-A-T ***
22204050-C-A 20042164-C-A ***
22223940-T-C 20062054-T-C DYZ19 ***
22223951-T-G 20062065-T-G DYZ19 ***
22237134-A-G 20075248-A-G DYZ19 ***
22237162-A-T 20075276-A-T DYZ19 ***
22237163-C-T 20075277-C-T DYZ19 ***
22248543-T-A 20086657-T-A DYZ19 ***
22252524-C-T 20090638-C-T DYZ19 ***
22252528-C-A 20090642-C-A DYZ19 ***
22283206-G-T 20121320-G-T DYZ19 ***
22283221-T-G 20121335-T-G DYZ19 ***
22283226-C-T 20121340-C-T DYZ19 ***
22283232-A-T 20121346-A-T DYZ19 ***
22292844-A-G 20130958-A-G DYZ19 ***
22297133-C-A 20135247-C-A DYZ19 ***
22305946-A-G 20144060-A-G DYZ19 ***
22305961-G-A 20144075-G-A DYZ19 ***
22311178-T-A 20149292-T-A DYZ19 ***
22311209-C-G 20149323-C-G DYZ19 ***
22311210-A-T 20149324-A-T DYZ19 ***
22311232-T-A 20149346-T-A DYZ19 ***
22330456-T-A 20168570-T-A DYZ19 ***
22333334-A-T 20171448-A-T DYZ19 ***
22341168-C-A 20179282-C-A DYZ19 ***
22341173-G-A 20179287-G-A DYZ19 ***
22341179-A-T 20179293-A-T DYZ19 ***
22341180-G-A 20179294-G-A DYZ19 ***
22341578-G-T 20179692-G-T DYZ19 ***
22341688-G-T 20179802-G-T DYZ19 ***
22341934-G-C 20180048-G-C DYZ19 ***
22341972-G-T 20180086-G-T DYZ19 ***
22341973-A-T 20180087-A-T DYZ19 ***
22349408-C-G 20187522-C-G DYZ19 ***
22349424-T-A 20187538-T-A DYZ19 ***
22349721-A-T 20187835-A-T DYZ19 ***
22352473-A-T 20190587-A-T DYZ19 ***
22358243-G-T 20196357-G-T DYZ19 ***
22360189-C-G 20198303-C-G DYZ19 ***
22367597-T-G 20205711-T-G DYZ19 ***
22450191-A-T 20288305-A-T DYZ19 ***
22452440-T-G 20290554-T-G DYZ19 ***
22481128-G-T 20319242-G-T DYZ19 ***
22481176-C-A 20319290-C-A DYZ19 ***
22481178-A-G 20319292-A-G DYZ19 ***
22481255-C-G 20319369-C-G DYZ19 ***
22481262-G-A 20319376-G-A DYZ19 ***
22481264-G-C 20319378-G-C DYZ19 ***
22481279-C-A 20319393-C-A DYZ19 ***
22481280-T-C 20319394-T-C DYZ19 ***
22490168-C-A 20328282-C-A DYZ19 ***
22498899-A-T 20337013-A-T DYZ19 ***
22503353-G-C 20341467-G-C DYZ19 ***
22503355-G-T 20341469-G-T DYZ19 ***
22503368-T-G 20341482-T-G DYZ19 ***
22503658-A-G 20341772-A-G DYZ19 ***
22503661-C-G 20341775-C-G DYZ19 ***
22503669-C-T 20341783-C-T DYZ19 ***
22503683-T-C 20341797-T-C DYZ19 ***
22504529-G-T 20342643-G-T DYZ19 ***
22545577-A-G 20383691-A-G ***
22757267-T-A 20595381-T-A ***
22777150-T-A 20615264-T-A ***
23192414-A-G 21030528-A-G ***
23230917-C-T 21069031-C-T ***
23318058-A-T 21156172-A-T ***
23318061-C-T 21156175-C-T ***
23519304-G-T 21357418-G-T ***
23660898-A-G 21499012-A-G ***
24013652-G-A 21867505-G-A ***
24073487-G-T 21927340-G-T P3_b1 ***
24073490-A-T 21927343-A-T P3_b1 ***
24110064-T-C 21963917-T-C P3_b1 ***
24126032-C-A 21979885-C-A P3_b1 ***
24181679-T-A 22035532-T-A P3_b1 ***
24283301-C-A 22137154-C-A P3_t1 ***
24387334-C-T 22241187-C-T ***
24490170-G-T 22344023-G-T ***
24595301-T-C 22449154-T-C P3_t2 ***
24686530-A-T 22540383-A-T P3_b2 ***
24705741-G-T 22559594-G-T P3_b2 ***
24753061-G-T 22606914-G-T P3_b2 ***
24862106-C-A 22715959-C-A IR1_R ***
24896528-G-T 22750381-G-T g1 ***
24935409-C-T 22789262-C-T g1 ***
24970519-C-A 22824372-C-A g1 ***
24970677-G-T 22824530-G-T g1 ***
25056249-T-G 22910102-T-G g1 ***
25097126-C-T 22950979-C-T g1 ***
25176354-C-A 23030207-C-A g1 ***
25207736-T-A 23061589-T-A P2_r1 ***
25241352-C-A 23095205-C-A P2_r1 ***
25273901-C-T 23127754-C-T P2_r1 ***
25296453-G-T 23150306-G-T P2_r1 ***
25312568-T-G 23166421-T-G P2_r1 ***
25323140-G-T 23176993-G-T P2_r1 ***
25359645-C-A 23213498-C-A P2_r2 ***
25377298-G-T 23231151-G-T P2_r2 ***
25379803-T-C 23233656-T-C P2_r2 ***
25466190-C-A 23320043-C-A P2_r2 ***
25586875-T-A 23440728-T-A P1_gr1 ***
25628502-C-T 23482355-C-T P1_b3 ***
25628503-A-T 23482356-A-T P1_b3 ***
25628636-C-A 23482489-C-A P1_b3 ***
25628641-G-A 23482494-G-A P1_b3 ***
25628657-C-T 23482510-C-T P1_b3 ***
25720495-G-A 23574348-G-A P1_b3 ***
25730056-C-A 23583909-C-A P1_b3 ***
25791963-T-C 23645816-T-C P1_b3 ***
25839384-G-A 23693237-G-A P1_b3 ***
26024766-G-T 23878619-G-T P1_Y1 ***
26065631-G-T 23919484-G-T P1_Y1 ***
26124379-C-A 23978232-C-A P1_Y1 ***
26201643-G-T 24055496-G-T P1_Y1 ***
26228967-A-T 24082820-A-T P1_Y1 ***
26248621-C-A 24102474-C-A P1_Y1 ***
26263907-T-C 24117760-T-C P1_Y1 ***
26433613-A-T 24287466-A-T P1_Y1 ***
26466230-C-T 24320083-C-T P1_Y1 ***
26484123-G-A 24337976-G-A P1_Y1 ***
26500188-G-T 24354041-G-T P1_Y1 ***
26810756-G-C 24664609-G-C P1_g2 ***
27053909-G-A 24907762-G-A P1_r4 ***
27060563-A-T 24914416-A-T P1_r4 ***
27221877-T-A 25075730-T-A P1_g3 ***
27356859-T-A 25210712-T-A P1_g3 ***
27398082-T-A 25251935-T-A P1_g3 ***
27483132-G-A 25336985-G-A P1_Y2 ***
27553682-T-G 25407535-T-G P1_Y2 ***
27571237-G-T 25425090-G-T P1_Y2 ***
27585980-T-G 25439833-T-G P1_Y2 ***
27593368-C-T 25447221-C-T P1_Y2 ***
27608488-A-G 25462341-A-G P1_Y2 ***
27619088-G-C 25472941-G-C P1_Y2 ***
27619119-C-G 25472972-C-G P1_Y2 ***
27647241-T-C 25501094-T-C P1_Y2 ***
27663299-G-A 25517152-G-A P1_Y2 ***
27691554-T-A 25545407-T-A P1_Y2 ***
27692192-A-G 25546045-A-G P1_Y2 ***
27733610-T-G 25587463-T-G P1_Y2 ***
27733707-T-A 25587560-T-A P1_Y2 ***
27783436-T-A 25637289-T-A P1_Y2 ***
27916539-G-T 25770392-G-T P1_Y2 ***
27971698-C-A 25825551-C-A P1_Y2 ***
28018184-T-G 25872037-T-G P1_Y2 ***
28018651-A-T 25872504-A-T P1_Y2 ***
28022794-T-G 25876647-T-G P1_Y2 ***
28053787-G-T 25907640-G-T P1_Y2 ***
28063340-G-T 25917193-G-T P1_Y2 ***
28200838-C-T 26054691-C-T P1_b4 ***
28205368-G-T 26059221-G-T P1_b4 ***
28246205-G-A 26100058-G-A P1_b4 ***
28281499-G-T 26135352-G-T P1_b4 ***
58829352-T-A 56761519-A-T ***
58837379-T-C 56753492-A-G ***
58837591-G-A 56753280-C-T ***
58845033-A-G 56745838-T-C ***
58863794-G-T 56727077-C-A ***
58867977-G-T 56722894-C-A ***
58869487-A-T 56721384-T-A ***
58873182-A-T 56717689-T-A ***
58873405-G-C 56717466-C-G ***
58876842-C-A 56714029-G-T ***
58876869-A-C 56714002-T-G ***
58877320-A-T 56713551-T-A ***
58879502-T-C 56711369-A-G ***
58882052-A-C 56708819-T-G ***
58885575-C-T 56705296-G-A ***
58887820-C-T 56703051-G-A ***
58891022-A-T 56699849-T-A ***
58898719-A-T 56692152-T-A ***
58899421-A-C 56691450-T-G ***
58899434-A-T 56691437-T-A ***
58903002-A-T 56687869-T-A ***
58913899-A-G 56676972-T-C ***
58913913-G-T 56676958-C-A ***
58913987-C-G 56676884-G-C ***
16344410-C-CTTCTTT 14232530-C-CTTCTTT ***
19261150-C-TT 17149270-C-TT ***
15658212-CGT-C 13546332-CGT-C ***
24387413-CCA-C 22241266-CCA-C ***
2903290-CCTTC-T 3035249-CCTTC-T ***
3930604-TAC-T 4062563-TAC-T ***
4167657-CAAAAAAA-C 4299616-CAAAAAAA-C 18×A***
4826400-T-TTATA 4958359-T-TTATA 22×TA***
5028088-T-TAATAG 5160047-T-TAATAG ***
7545015-G-GT 7676974-G-GT ***
8125069-G-GGGAAA 8257028-G-GGGAAA ***
8468065-CAAAAAAAAAA-C 8600024-CAAAAAAAAAA-C 24×A***
9654338-AGAAAGAAAG-GATAGAAAGAAAGAAAGA 9816729-AGAAAGAAAG-GATAGAAAGAAAGAAAGA IR3_Prx ***
13194516-ATTCCAT-A 11038840-ATTCCAT-A ***
13454810-T-TCCATC 11299134-T-TCCATC ***
13454818-A-ATTCCT 11299142-A-ATTCCT ***
13471944-GGGC-CGGT 11316268-GGGC-CGGT ***
13471993-CCTGC-GCTGT 11316317-CCTGC-GCTGT ***
13472003-TGG-AGA 11316327-TGG-AGA ***
13730698-AT-TA 11575022-AT-TA ***
13733865-ACGAGCGCAA-TGGACCACAT 11578189-ACGAGCGCAA-TGGACCACAT ***
13983583-G-GAAGTAAGC 11862877-G-GAAGTAAGC ***
14610887-A-ACATG 12499093-A-ACATG ***
14610903-A-ACATG 12499109-A-ACATG ***
14610908-C-CATAG 12499114-C-CATAG ***
14645416-TTTTG-T 12533480-TTTTG-T ***
15491537-C-CA 13379657-C-CA ***
17274965-G-GATAT 15163085-G-GATAT ***
17274967-T-TAGAA 15163087-T-TAGAA ***
17274975-T-TAGAC 15163095-T-TAGAC ***
17274979-T-TAGAA 15163099-T-TAGAA ***
17991069-ATATATAT-A 15879189-ATATATAT-A P7_Prx ***
17991090-ATA-TT 15879210-ATA-TT P7_Prx ***
19486859-CTTTTT-C 17374979-CTTTTT-C 16×T***
19500593-G-GAGAAAGAAAGAAAGAA 17388713-G-GAGAAAGAAAGAAAGAA 15×AGAA***
21464204-G-GAAAGAAAA 19302318-G-GAAAGAAAA ***
21464210-A-AAGAAAGAG 19302324-A-AAGAAAGAG ***
22341149-CTTCT-GTTCA 20179263-CTTCT-GTTCA DYZ19 ***
22341179-AG-TA 20179293-AG-TA DYZ19 ***
22358173-TTTCG-GTACA 20196287-TTTCG-GTACA DYZ19 ***
22481124-TTATG-GTATT 20319238-TTATG-GTATT DYZ19 ***
24232042-ACTCT-CCTCC 22085895-ACTCT-CCTCC P3_b1 ***
24232072-CAAC-AAAA 22085925-CAAC-AAAA P3_b1 ***
27483131-TG-CA 25336984-TG-CA P1_Y2 ***
58829352-TCGA-ATGC 56761516-TCGA-GCAT ***
58844979-TCCATTTGATGCCATC-T 56745872-CATGGGATGGCATCAA-C ***
58908884-CCATTCCATTCCATTCCATTG-C 56681952-CAATGGAATGGAATGCAATGG-C ***
58980036-CCACG-TCACT 56833889-CCACG-TCACT ***
58986163-TGCCTAA-AGCTTAC 56840016-TGCCTAA-AGCTTAC ***
59022603-AAAC-A 56876456-AAAC-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.