Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > M222 > FGC4077 > A725 > ~25552691-A-G > FGC42640

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
GNSTN
28607093-A-T 26460946-A-T FGC42657 +
8982048-T-C 9144439-T-C ZS4529 Y+
4657816-C-T 4789775-C-T FGC42639 +
3895898-G-T 4027857-G-T FGC42638 +
19477919-C-A 17366039-C-A FGC42654 YY+
19356242-C-A 17244362-C-A FGC42652 YY+
5696230-C-T 5828189-C-T F9417 FGC42637 +
21861667-G-A 19699781-G-A FGC42655 YY+
28080918-G-C 25934771-G-C FGC42656 P1_Y2 *
24485755-A-T 22339608-A-T **
17025770-G-T 14913890-G-T **
14391129-G-T 12270425-G-T **
13293176-C-A 11137500-C-A **
13293243-A-G 11137567-A-G **
16978862-C-A 14866982-C-A **
16024252-T-C 13912372-T-C **
13466740-C-A 11311064-C-A **
16352454-C-A 14240574-C-A **
16322910-G-T 14211030-G-T **
15278880-T-C 13166979-T-C **
58986163-T-A 56840016-T-A **
26204854-T-A 24058707-T-A FGC15632 P1_Y1 **
58862812-T-G 56728059-A-C **
14656131-C-G 12544196-C-G **
15856572-T-C 13744692-T-C **
58986184-C-G 56840037-C-G **
14121521-G-A 12000815-G-A **
15645178-GTTT-G 13533298-GTTT-G **
24387386-C-T 22241239-C-T FGC71339 **
21421790-GA-G 19259904-GA-G **
58908961-A-G 56681910-T-C **
24387347-CATAT-C 22241200-CATAT-C **
18727668-G-T 16615788-G-T **
18727638-G-T 16615758-G-T **
24387404-A-G 22241257-A-G **
24485730-A-T 22339583-A-T **
4976775-T-G 5108734-T-G FGC71258 **
19319834-G-GTATA 17207954-G-GTATA 23×TA**
58862765-A-G 56728106-T-C **
22498899-A-T 20337013-A-T DYZ19 ***
22503683-T-C 20341797-T-C DYZ19 ***
22503669-C-T 20341783-C-T DYZ19 ***
22503661-C-G 20341775-C-G DYZ19 ***
22450191-A-T 20288305-A-T DYZ19 ***
22452440-T-G 20290554-T-G DYZ19 ***
22490168-C-A 20328282-C-A DYZ19 ***
22503658-A-G 20341772-A-G DYZ19 ***
22503355-G-T 20341469-G-T DYZ19 ***
22503368-T-G 20341482-T-G DYZ19 ***
22481279-C-A 20319393-C-A DYZ19 ***
22503353-G-C 20341467-G-C DYZ19 ***
22481176-C-A 20319290-C-A DYZ19 ***
22481280-T-C 20319394-T-C DYZ19 ***
22481178-A-G 20319292-A-G DYZ19 ***
22481255-C-G 20319369-C-G DYZ19 ***
22481262-G-A 20319376-G-A DYZ19 ***
22481264-G-C 20319378-G-C DYZ19 ***
22481128-G-T 20319242-G-T DYZ19 ***
22287090-TA-T 20125204-TA-T DYZ19 ***
22504529-G-T 20342643-G-T DYZ19 ***
24490170-G-T 22344023-G-T ***
25241352-C-A 23095205-C-A P2_r1 ***
25207736-T-A 23061589-T-A P2_r1 ***
25176354-C-A 23030207-C-A g1 ***
25097126-C-T 22950979-C-T g1 ***
25056249-T-G 22910102-T-G g1 ***
24970677-G-T 22824530-G-T g1 ***
24970519-C-A 22824372-C-A g1 ***
24935409-C-T 22789262-C-T g1 ***
24896528-G-T 22750381-G-T g1 ***
24862106-C-A 22715959-C-A P3_b2 ***
24753061-G-T 22606914-G-T P3_b2 ***
24705741-G-T 22559594-G-T P3_b2 ***
24686530-A-T 22540383-A-T P3_b2 ***
24595301-T-C 22449154-T-C P3_t2 ***
24387334-C-T 22241187-C-T ***
22545577-A-G 20383691-A-G ***
24283301-C-A 22137154-C-A P3_t1 ***
24181679-T-A 22035532-T-A P3_b1 ***
24126032-C-A 21979885-C-A P3_b1 ***
24110064-T-C 21963917-T-C P3_b1 ***
24073490-A-T 21927343-A-T P3_b1 ***
24073487-G-T 21927340-G-T P3_b1 ***
24013652-G-A 21867505-G-A ***
23519304-G-T 21357418-G-T ***
23318061-C-T 21156175-C-T ***
23318058-A-T 21156172-A-T ***
23230917-C-T 21069031-C-T ***
23192414-A-G 21030528-A-G ***
22777150-T-A 20615264-T-A ***
22757267-T-A 20595381-T-A ***
23660898-A-G 21499012-A-G ***
22341173-G-A 20179287-G-A DYZ19 ***
22367597-T-G 20205711-T-G DYZ19 ***
20998263-T-G 18836377-T-G P4_Dst ***
22237134-A-G 20075248-A-G DYZ19 ***
22223951-T-G 20062065-T-G DYZ19 ***
22223940-T-C 20062054-T-C DYZ19 ***
22204050-C-A 20042164-C-A ***
21579442-A-T 19417556-A-T ***
21578220-A-G 19416334-A-G ***
21574072-C-T 19412186-C-T ***
21448275-G-A 19286389-G-A ***
21448202-C-T 19286316-C-T ***
21448017-C-T 19286131-C-T ***
21409196-C-A 19247310-C-A ***
21119620-A-T 18957734-A-T ***
21012759-T-C 18850873-T-C P4_Dst ***
20998190-T-C 18836304-T-C P4_Dst ***
22237163-C-T 20075277-C-T DYZ19 ***
20908822-G-A 18746936-G-A P4_Dst ***
20887947-A-G 18726061-A-G P4_Dst ***
20865944-T-C 18704058-T-C P4_Dst ***
20426452-G-T 18264566-G-T P5_Dst ***
20425318-G-T 18263432-G-T P5_Dst ***
20408273-T-C 18246387-T-C P5_Dst ***
20330945-G-C 18169059-G-C P5_Dst ***
20329994-T-A 18168108-T-A P5_Dst ***
20306729-C-T 18144843-C-T P5_Dst ***
20084893-A-T 17973013-A-T P5_Dst ***
20084536-G-T 17972656-G-T P5_Dst ***
20062497-T-C 17950617-T-C P5_Prx ***
19845514-A-T 17733634-A-T P5_Prx ***
22237162-A-T 20075276-A-T DYZ19 ***
22248543-T-A 20086657-T-A DYZ19 ***
22360189-C-G 20198303-C-G DYZ19 ***
22341168-C-A 20179282-C-A DYZ19 ***
22358243-G-T 20196357-G-T DYZ19 ***
22352473-A-T 20190587-A-T DYZ19 ***
22349721-A-T 20187835-A-T DYZ19 ***
22349424-T-A 20187538-T-A DYZ19 ***
22349408-C-G 20187522-C-G DYZ19 ***
22341973-A-T 20180087-A-T DYZ19 ***
22341972-G-T 20180086-G-T DYZ19 ***
22341934-G-C 20180048-G-C DYZ19 ***
22341688-G-T 20179802-G-T DYZ19 ***
22341578-G-T 20179692-G-T DYZ19 ***
22341180-G-A 20179294-G-A DYZ19 ***
22341179-A-T 20179293-A-T DYZ19 ***
25296453-G-T 23150306-G-T P2_r1 ***
22333334-A-T 20171448-A-T DYZ19 ***
22252524-C-T 20090638-C-T DYZ19 ***
22330456-T-A 20168570-T-A DYZ19 ***
22311232-T-A 20149346-T-A DYZ19 ***
22311210-A-T 20149324-A-T DYZ19 ***
22311209-C-G 20149323-C-G DYZ19 ***
22311178-T-A 20149292-T-A DYZ19 ***
22305961-G-A 20144075-G-A DYZ19 ***
22305946-A-G 20144060-A-G DYZ19 ***
22297133-C-A 20135247-C-A DYZ19 ***
22292844-A-G 20130958-A-G DYZ19 ***
22283232-A-T 20121346-A-T DYZ19 ***
22283226-C-T 20121340-C-T DYZ19 ***
22283221-T-G 20121335-T-G DYZ19 ***
22283206-G-T 20121320-G-T DYZ19 ***
22252528-C-A 20090642-C-A DYZ19 ***
25273901-C-T 23127754-C-T P2_r1 ***
25628641-G-A 23482494-G-A P1_b3 ***
25312568-T-G 23166421-T-G P2_r1 ***
15658212-CGT-C 13546332-CGT-C ***
13454810-T-TCCATC 11299134-T-TCCATC ***
13385079-CT-C 11229403-CT-C 14×T***
13194516-ATTCCAT-A 11038840-ATTCCAT-A ***
9654338-AGAAAGAAAG-GATAGAAAGAAAGAAAGA 9816729-AGAAAGAAAG-GATAGAAAGAAAGAAAGA IR3_Prx ***
8468065-CAAAAAAAAAA-C 8600024-CAAAAAAAAAA-C 24×A***
8125069-G-GGGAAA 8257028-G-GGGAAA ***
7545015-G-GT 7676974-G-GT ***
5028088-T-TAATAG 5160047-T-TAATAG ***
4826400-T-TTATA 4958359-T-TTATA 22×TA***
4650472-GATAT-G 4782431-GATAT-G 24×AT***
4167657-CAAAAAAA-C 4299616-CAAAAAAA-C 18×A***
3930604-TAC-T 4062563-TAC-T ***
2903290-CCTTC-T 3035249-CCTTC-T ***
24387413-CCA-C 22241266-CCA-C ***
19261150-C-TT 17149270-C-TT ***
13471944-GGGC-CGGT 11316268-GGGC-CGGT ***
13255809-TG-T 11100133-TG-T 12×G***
16344410-C-CTTCTTT 14232530-C-CTTCTTT ***
58913987-C-G 56676884-G-C ***
58913913-G-T 56676958-C-A ***
58913899-A-G 56676972-T-C ***
58903002-A-T 56687869-T-A ***
58899434-A-T 56691437-T-A ***
58899421-A-C 56691450-T-G ***
58898719-A-T 56692152-T-A ***
58891022-A-T 56699849-T-A ***
58887820-C-T 56703051-G-A ***
58885575-C-T 56705296-G-A ***
58882052-A-C 56708819-T-G ***
58879502-T-C 56711369-A-G ***
13454818-A-ATTCCT 11299142-A-ATTCCT ***
13471993-CCTGC-GCTGT 11316317-CCTGC-GCTGT ***
58876869-A-C 56714002-T-G ***
19500593-G-GAGAAAGAAAGAAAGAA 17388713-G-GAGAAAGAAAGAAAGAA 15×AGAA***
58986163-TGCCTAA-AGCTTAC 56840016-TGCCTAA-AGCTTAC ***
58980036-CCACG-TCACT 56833889-CCACG-TCACT ***
58908884-CCATTCCATTCCATTCCATTG-C 56681952-CAATGGAATGGAATGCAATGG-C ***
58844979-TCCATTTGATGCCATC-T 56745872-CATGGGATGGCATCAA-C ***
58829352-TCGA-ATGC 56761516-TCGA-GCAT ***
27483131-TG-CA 25336984-TG-CA P1_Y2 ***
24232072-CAAC-AAAA 22085925-CAAC-AAAA P3_b1 ***
24232042-ACTCT-CCTCC 22085895-ACTCT-CCTCC P3_b1 ***
22481124-TTATG-GTATT 20319238-TTATG-GTATT DYZ19 ***
22358173-TTTCG-GTACA 20196287-TTTCG-GTACA DYZ19 ***
22341179-AG-TA 20179293-AG-TA DYZ19 ***
22341149-CTTCT-GTTCA 20179263-CTTCT-GTTCA DYZ19 ***
21464210-A-AAGAAAGAG 19302324-A-AAGAAAGAG ***
21464204-G-GAAAGAAAA 19302318-G-GAAAGAAAA ***
19486859-CTTTTT-C 17374979-CTTTTT-C 16×T***
13472003-TGG-AGA 11316327-TGG-AGA ***
17991090-ATA-TT 15879210-ATA-TT P7_Prx ***
17991069-ATATATAT-A 15879189-ATATATAT-A P7_Prx ***
17274979-T-TAGAA 15163099-T-TAGAA ***
17274975-T-TAGAC 15163095-T-TAGAC ***
17274967-T-TAGAA 15163087-T-TAGAA ***
17274965-G-GATAT 15163085-G-GATAT ***
15491537-C-CA 13379657-C-CA ***
14645416-TTTTG-T 12533480-TTTTG-T ***
14610908-C-CATAG 12499114-C-CATAG ***
14610903-A-ACATG 12499109-A-ACATG ***
14610887-A-ACATG 12499093-A-ACATG ***
13983583-G-GAAGTAAGC 11862877-G-GAAGTAAGC ***
13733865-ACGAGCGCAA-TGGACCACAT 11578189-ACGAGCGCAA-TGGACCACAT ***
13730698-AT-TA 11575022-AT-TA ***
58877320-A-T 56713551-T-A ***
58876842-C-A 56714029-G-T ***
25323140-G-T 23176993-G-T P2_r1 ***
26065631-G-T 23919484-G-T P1_Y1 ***
27356859-T-A 25210712-T-A P1_g3 ***
27221877-T-A 25075730-T-A P1_g3 ***
27060563-A-T 24914416-A-T P1_r4 ***
27053909-G-A 24907762-G-A P1_r4 ***
26810756-G-C 24664609-G-C P1_g2 ***
26500188-G-T 24354041-G-T P1_Y1 ***
26484123-G-A 24337976-G-A P1_Y1 ***
26466230-C-T 24320083-C-T P1_Y1 ***
26433613-A-T 24287466-A-T P1_Y1 ***
26263907-T-C 24117760-T-C P1_Y1 ***
26248621-C-A 24102474-C-A P1_Y1 ***
26228967-A-T 24082820-A-T P1_Y1 ***
26201643-G-T 24055496-G-T P1_Y1 ***
26124379-C-A 23978232-C-A P1_Y1 ***
26024766-G-T 23878619-G-T P1_Y1 ***
27483132-G-A 25336985-G-A P1_Y2 ***
25839384-G-A 23693237-G-A P1_b3 ***
25791963-T-C 23645816-T-C P1_b3 ***
25730056-C-A 23583909-C-A P1_b3 ***
25720495-G-A 23574348-G-A P1_b3 ***
25628657-C-T 23482510-C-T P1_b3 ***
19753483-A-C 17641603-A-C P5_Prx ***
25628636-C-A 23482489-C-A P1_b3 ***
25628503-A-T 23482356-A-T P1_b3 ***
25628502-C-T 23482355-C-T P1_b3 ***
25586875-T-A 23440728-T-A P1_gr1 ***
25466190-C-A 23320043-C-A P2_r2 ***
25379803-T-C 23233656-T-C P2_r2 ***
25377298-G-T 23231151-G-T P2_r2 ***
25359645-C-A 23213498-C-A P2_r2 ***
27398082-T-A 25251935-T-A P1_g3 ***
27553682-T-G 25407535-T-G P1_Y2 ***
58873405-G-C 56717466-C-G ***
28022794-T-G 25876647-T-G P1_Y2 ***
58873182-A-T 56717689-T-A ***
58869487-A-T 56721384-T-A ***
58867977-G-T 56722894-C-A ***
58863794-G-T 56727077-C-A ***
58845033-A-G 56745838-T-C ***
58837591-G-A 56753280-C-T ***
58837379-T-C 56753492-A-G ***
58829352-T-A 56761519-A-T ***
28281499-G-T 26135352-G-T P1_b4 ***
28246205-G-A 26100058-G-A P1_b4 ***
28205368-G-T 26059221-G-T P1_b4 ***
28200838-C-T 26054691-C-T P1_b4 ***
28063340-G-T 25917193-G-T P1_Y2 ***
28053787-G-T 25907640-G-T P1_Y2 ***
28018651-A-T 25872504-A-T P1_Y2 ***
27571237-G-T 25425090-G-T P1_Y2 ***
27663299-G-A 25517152-G-A P1_Y2 ***
27585980-T-G 25439833-T-G P1_Y2 ***
27593368-C-T 25447221-C-T P1_Y2 ***
27608488-A-G 25462341-A-G P1_Y2 ***
27619088-G-C 25472941-G-C P1_Y2 ***
27619119-C-G 25472972-C-G P1_Y2 ***
27647241-T-C 25501094-T-C P1_Y2 ***
27691554-T-A 25545407-T-A P1_Y2 ***
28018184-T-G 25872037-T-G P1_Y2 ***
27692192-A-G 25546045-A-G P1_Y2 ***
27733610-T-G 25587463-T-G P1_Y2 ***
27733707-T-A 25587560-T-A P1_Y2 ***
27783436-T-A 25637289-T-A P1_Y2 ***
27916539-G-T 25770392-G-T P1_Y2 ***
27971698-C-A 25825551-C-A P1_Y2 ***
19815974-T-C 17704094-T-C P5_Prx ***
18274707-G-T 16162827-G-T P6_Prx ***
19753431-G-T 17641551-G-T P5_Prx ***
13466719-G-A 11311043-G-A ***
58874004-A-C 56716867-T-G ***
27483079-T-C 25336932-T-C P1_Y2 ***
22777146-C-T 20615260-C-T ***
58837227-G-A 56753644-C-T ***
13813881-C-G 11693175-C-G ***
22252530-T-G 20090644-T-G DYZ19 ***
22330382-G-C 20168496-G-C DYZ19 ***
13489725-C-T 11334049-C-T ***
22348874-A-T 20186988-A-T DYZ19 ***
13472035-A-G 11316359-A-G ***
22341368-G-A 20179482-G-A DYZ19 ***
22189214-G-A 20027328-G-A ***
24388082-A-ATT 22241935-A-ATT ***
13466712-G-T 11311036-G-T ***
2674448-T-G 2806407-T-G ***
22422749-G-T 20260863-G-T DYZ19 ***
22341930-T-C 20180044-T-C DYZ19 ***
22346833-T-A 20184947-T-A DYZ19 ***
6196837-G-A 6328796-G-A IR3_Dst ***
26170527-GGAA-G 24024380-GGAA-G P1_Y1 23×GAA***
22366592-T-C 20204706-T-C DYZ19 ***
22356760-GTCCATCACATA-TTCCTTCAGATG 20194874-GTCCATCACATA-TTCCTTCAGATG DYZ19 ***
15047301-T-TA 12935392-T-TA ***
13478281-ATCCG-CTCCT 11322605-ATCCG-CTCCT ***
28022799-T-G 25876652-T-G P1_Y2 ***
23415304-G-A 21253418-G-A ***
22297134-C-T 20135248-C-T DYZ19 ***
22262577-ATGT-GTGC 20100691-ATGT-GTGC DYZ19 ***
13472024-A-G 11316348-A-G ***
5107325-T-A 5239284-T-A ***
2674597-C-A 2806556-C-A ***
58876310-C-T 56714561-G-A ***
4020198-T-G 4152157-T-G ***
5107283-G-T 5239242-G-T ***
4914863-T-C 5046822-T-C ***
4822500-G-T 4954459-G-T ***
4331844-G-A 4463803-G-A ***
4228156-G-T 4360115-G-T ***
4224043-G-A 4356002-G-A ***
4020224-T-C 4152183-T-C ***
4020217-A-G 4152176-A-G ***
4020215-T-C 4152174-T-C ***
4020214-A-G 4152173-A-G ***
4020211-T-G 4152170-T-G ***
4020208-T-C 4152167-T-C ***
4020200-A-T 4152159-A-T ***
4020192-G-C 4152151-G-C ***
3167013-G-A 3298972-G-A ***
4020185-T-C 4152144-T-C ***
4020184-G-T 4152143-G-T ***
4020176-T-A 4152135-T-A ***
4020170-A-C 4152129-A-C ***
3785724-G-C 3917683-G-C ***
3634304-T-G 3766263-T-G ***
3603659-G-A 3735618-G-A ***
3603646-C-A 3735605-C-A ***
3576229-A-G 3708188-A-G ***
3548701-G-C 3680660-G-C ***
3495467-G-T 3627426-G-T ***
3461923-C-T 3593882-C-T ***
3312175-A-G 3444134-A-G ***
3207279-A-C 3339238-A-C ***
13472029-T-C 11316353-T-C ***
22503322-G-A 20341436-G-A DYZ19 ***
5107301-C-T 5239260-C-T ***
26538885-T-A 24392738-T-A P1_g2 ***
4848382-ATG-A 4980341-ATG-A ***
4158614-G-T 4290573-G-T ***
13257534-A-G 11101858-A-G Z11992 ***
13489724-C-A 11334048-C-A ***
22274188-G-T 20112302-G-T DYZ19 ***
13258700-A-G 11103024-A-G ***
13471969-CACTG-AACCA 11316293-CACTG-AACCA ***
13471960-CGCC-TGCT 11316284-CGCC-TGCT ***
22358609-A-C 20196723-A-C DYZ19 ***
14610673-A-C 12498875-A-C ***
22330090-T-G 20168204-T-G DYZ19 ***
22309078-G-A 20147192-G-A DYZ19 ***
3181857-CA-C 3313816-CA-C 20×A***
26262523-T-C 24116376-T-C P1_Y1 ***
7545014-G-GC 7676973-G-GC ***
20892325-G-GA 18730439-G-GA P4_Dst 11×A***
3970985-C-CT 4102944-C-CT 17×T***
22481326-G-C 20319440-G-C DYZ19 ***
24388091-T-TAA 22241944-T-TAA ***
22349435-C-G 20187549-C-G FGC15913 DYZ19 ***
22248537-T-A 20086651-T-A DYZ19 ***
22341971-A-T 20180085-A-T DYZ19 ***
22308503-C-A 20146617-C-A DYZ19 ***
13466720-A-T 11311044-A-T ***
25200983-GAAGGAAGA-G 23054836-GAAGGAAGA-G g1 ***
13488439-TG-CA 11332763-TG-CA ***
58869760-C-G 56721111-G-C ***
9574853-C-CA 9737244-C-CA IR3_Prx 12×A***
15491536-C-CA 13379656-C-CA ***
6040788-G-GAA 6172747-G-GAA ***
9429479-AT-A 9591870-AT-A ***
7532276-GTATATA-G 7664235-GTATATA-G 28×TA***
13488308-T-G 11332632-T-G ***
9030408-AGAAAG-A 9192799-AGAAAG-A 17×GAAAG***
20084534-G-T 17972654-G-T P5_Dst ***
20084533-G-T 17972653-G-T P5_Dst ***
58843307-T-C 56747564-A-G FGC42762 ***
25246340-C-T 23100193-C-T P2_r1 ***
16978870-C-T 14866990-C-T Z9322 ***
13383525-C-G 11227849-C-G FGC39086 ***
13383095-T-G 11227419-T-G ***
13262097-A-G 11106421-A-G ***
8481197-T-A 8613156-T-A ***
22237153-A-T 20075267-A-T DYZ19 ***
22356884-T-A 20194998-T-A DYZ19 ***
22330453-G-T 20168567-G-T DYZ19 ***
26024841-G-C 23878694-G-C GG046 P1_Y1 ***
22450153-A-C 20288267-A-C DYZ19 ***
13223678-T-G 11068002-T-G ***
6903421-G-C 7035380-G-C ***
13488440-G-A 11332764-G-A ***
58869341-T-C 56721530-A-G ***
26500451-A-C 24354304-A-C FGC29871 P1_Y1 23×AC***
26465969-T-A 24319822-T-A P1_Y1 ***
22237289-A-C 20075403-A-C DYZ19 ***
22237270-A-C 20075384-A-C DYZ19 ***
22237258-G-A 20075372-G-A DYZ19 ***
15557157-ATATATT-A 13445277-ATATATT-A ***
13518902-T-C 11363226-T-C ***
13518879-C-G 11363203-C-G ***
13383653-A-T 11227977-A-T ***
13383638-C-G 11227962-C-G ***
13383604-C-A 11227928-C-A ***
5107284-T-C 5239243-T-C ***
5107303-T-C 5239262-T-C ***
19560889-C-T 17449009-C-T ***
14304196-A-T 12183490-A-T ***
15629354-G-A 13517474-G-A ***
15626626-G-T 13514746-G-T ***
15626596-G-T 13514716-G-T ***
15297349-T-G 13185448-T-G ***
15297333-G-T 13185432-G-T ***
15242818-G-T 13130904-G-T ***
15221308-T-A 13109394-T-A ***
15221291-A-G 13109377-A-G ***
15101471-C-A 12989559-C-A ***
14625046-C-A 12513246-C-A ***
14564755-T-A 12452955-T-A ***
14467331-T-C 12346600-T-C ***
14307179-G-T 12186473-G-T ***
14178677-A-G 12057971-A-G ***
15889263-G-A 13777383-G-A ***
14114177-C-T 11993471-C-T ***
13978820-C-A 11858114-C-A ***
13910256-G-T 11789550-G-T ***
13735703-A-G 11580027-A-G ***
13729784-C-T 11574108-C-T ***
13726699-G-T 11571023-G-T ***
13722266-T-A 11566590-T-A ***
13645509-G-T 11489833-G-T ***
13596465-C-T 11440789-C-T ***
13583737-G-T 11428061-G-T ***
13549177-T-A 11393501-T-A ***
13549076-C-A 11393400-C-A ***
13489898-C-A 11334222-C-A ***
13489887-A-T 11334211-A-T ***
15804018-G-T 13692138-G-T ***
15889434-G-A 13777554-G-A ***
13489819-G-A 11334143-G-A ***
17724273-T-A 15612393-T-A ***
19487412-G-A 17375532-G-A ***
19487374-C-T 17375494-C-T ***
19487356-G-C 17375476-G-C ***
19310723-C-T 17198843-C-T ***
19012901-T-A 16901021-T-A ***
18875517-T-C 16763637-T-C ***
18622793-A-C 16510913-A-C ***
18542569-A-C 16430689-A-C ***
18366960-C-A 16255080-C-A P6_Prx ***
13488304-G-A 11332628-G-A ***
18230358-T-C 16118478-T-C ***
18135572-A-T 16023692-A-T ***
17991092-A-T 15879212-A-T P7_Prx ***
17757235-A-C 15645355-A-C ***
17724267-A-G 15612387-A-G ***
15891808-T-C 13779928-T-C ***
17724266-C-T 15612386-C-T ***
17724248-G-A 15612368-G-A ***
17724235-A-T 15612355-A-T ***
17724229-T-C 15612349-T-C ***
17162335-A-T 15050455-A-T ***
17126212-G-A 15014332-G-A ***
17030650-A-C 14918770-A-C ***
17006286-G-T 14894406-G-T ***
16978873-A-G 14866993-A-G ***
16881557-A-T 14769677-A-T ***
16686835-A-T 14574955-A-T ***
15963222-G-T 13851342-G-T ***
15960760-G-T 13848880-G-T ***
15960471-A-C 13848591-A-C ***
13489881-G-A 11334205-G-A ***
13489815-C-T 11334139-C-T ***
5107306-A-G 5239265-A-G ***
6196881-A-T 6328840-A-T IR3_Dst ***
9189547-A-G 9351938-A-G ***
8276534-G-T 8408493-G-T ***
8276506-C-G 8408465-C-G ***
8276493-C-A 8408452-C-A ***
8276490-C-T 8408449-C-T ***
7491137-C-A 7623096-C-A IR1_L ***
7443872-T-A 7575831-T-A ***
7440101-T-C 7572060-T-C ***
7142102-T-G 7274061-T-G ***
7060037-C-T 7191996-C-T ***
6903471-G-A 7035430-G-A ***
6597329-G-A 6729288-G-A ***
6313134-C-A 6445093-C-A IR3_Dst ***
6196875-T-A 6328834-T-A IR3_Dst ***
9191071-T-C 9353462-T-C ***
6196868-G-A 6328827-G-A IR3_Dst ***
6196836-T-C 6328795-T-C IR3_Dst ***
6196830-A-C 6328789-A-C IR3_Dst ***
6196829-C-T 6328788-C-T IR3_Dst ***
6196810-A-G 6328769-A-G IR3_Dst ***
6178098-A-G 6310057-A-G IR3_Dst ***
6170980-C-T 6302939-C-T IR3_Dst ***
6157893-C-T 6289852-C-T IR3_Dst ***
6155591-T-A 6287550-T-A IR3_Dst ***
6040775-G-A 6172734-G-A ***
5806462-T-A 5938421-T-A ***
5196276-G-A 5328235-G-A ***
5196262-T-G 5328221-T-G ***
5107313-G-C 5239272-G-C ***
9191051-T-C 9353442-T-C ***
9308523-C-T 9470914-C-T ***
13489804-C-T 11334128-C-T ***
13340625-G-T 11184949-G-T ***
13489771-G-T 11334095-G-T ***
13489769-C-A 11334093-C-A ***
13489765-T-C 11334089-T-C ***
13489743-C-T 11334067-C-T ***
13489738-C-T 11334062-C-T ***
13489717-C-T 11334041-C-T ***
13489702-C-T 11334026-C-T ***
13489607-G-A 11333931-G-A ***
13472014-C-T 11316338-C-T ***
13472005-G-A 11316329-G-A ***
13471997-C-T 11316321-C-T ***
13471198-C-T 11315522-C-T ***
13459591-G-T 11303915-G-T ***
13361655-G-T 11205979-G-T ***
13267644-A-T 11111968-A-T ***
9355206-A-T 9517597-A-T ***
13253137-A-G 11097461-A-G ***
13194521-A-C 11038845-A-C ***
10009178-A-T 10171569-A-T ***
9998165-A-T 10160556-A-T ***
9946368-C-T 10108759-C-T ***
9779313-A-C 9941704-A-C ***
9719190-T-C 9881581-T-C IR3_Prx ***
9699647-C-A 9862038-C-A IR3_Prx ***
9674825-A-T 9837216-A-T IR3_Prx ***
9674804-G-T 9837195-G-T IR3_Prx ***
9673766-A-T 9836157-A-T IR3_Prx ***
9617365-G-T 9779756-G-T IR3_Prx ***
9525924-T-C 9688315-T-C ***
9362310-G-C 9524701-G-C ***
59022603-AAAC-A 56876456-AAAC-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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