Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > FGC5494 > FGC5561 > Z16503 > Z16504 > Z16502

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
231244
BigY2
231244
6234798-G-A 6366757-G-A IR3_Dst ***A*
19839835-A-G 17727955-A-G P5_Prx ***A*
22252610-G-C 20090724-G-C DYZ19 ***A*
22290066-C-A 20128180-C-A DYZ19 ***A*
24250892-C-CCA 22104745-C-CCA P3_b1 ***A*
26000137-A-G 23853990-A-G P1_Y1 ***A*
6240592-T-C 6372551-T-C IR3_Dst A*
22254242-G-C 20092356-G-C DYZ19 A*
2877489-A-G 3009448-A-G FGC13519 YY++
7514034-G-A 7645993-G-A FGC13520 Y++
7564636-C-T 7696595-C-T FGC13521 YY++
8152491-G-T 8284450-G-T FGC13522 YY++
8656960-G-T 8788919-G-T FGC13523 YY++
8976513-G-A 9138904-G-A Y+
13676215-GTGGAATGGAATCAAA-G 11520539-GTGGAATGGAATCAAA-G ***+
13845466-A-AT 11724760-A-AT **+
14217394-T-C 12096688-T-C FGC13525 YY++
14497144-G-A 12385349-G-A FGC13526 YY++
15521457-G-T 13409577-G-T FGC13528 YY++
15528488-C-G 13416608-C-G FGC13529 YY++
15767956-C-T 13656076-C-T FGC13530 YY++
16541790-T-A 14429910-T-A FGC13531 YY++
16632225-C-T 14520345-C-T FGC13532 YY++
16781175-A-G 14669295-A-G FGC13533 YY++
17042069-A-AT 14930189-A-AT A14064 8×T++
17794158-TTTTCTTTC-T 15682278-TTTTCTTTC-T 12×TTTC+
19471278-G-A 17359398-G-A FGC13534 YY++
21239052-AGGCCTGGCCGAATTGCGGGCAGGC-A 19077166-AGGCCTGGCCGAATTGCGGGCAGGC-A +
21661590-C-A 19499704-C-A BY43624 YY++
21661603-G-C 19499717-G-C BY43625 YY++
22115460-G-GT 19953574-G-GT ++
22235591-C-T 20073705-C-T DYZ19 +
22590600-A-C 20428714-A-C FGC13536 YY++
22887792-G-A 20725906-G-A FGC13537 YY++
23567431-C-A 21405545-C-A FGC13538 YY++
23825464-A-T 21663578-A-T FGC13539 Y++
18612749-A-G 16500869-A-G A17232 YY+
22263568-T-A 20101682-T-A BY43708 DYZ19 +
17751-C-G +
28807893-A-G 26661746-A-G *
9307398-T-G 9469789-T-G BY176667 15×TG**
20022471-A-T 17910591-A-T P5_Prx **
10024358-T-A 10186749-T-A **
15426248-T-C 13314368-T-C **
18408601-G-T 16296721-G-T P6_Gap **
18612747-GTA-G 16500867-GTA-G **
23120061-G-A 20958175-G-A **
28483762-C-A 26337615-C-A **
9930295-T-TG 10092686-T-TG **
13295276-A-G 11139600-A-G **
9930307-A-T 10092698-A-T **
59000499-T-C 56854352-T-C **
22360281-G-T 20198395-G-T DYZ19 **
20404507-C-T 18242621-C-T P5_Dst **
22360200-T-A 20198314-T-A DYZ19 **
7186238-A-C 7318197-A-C **
27916437-C-A 25770290-C-A P1_Y2 **
13328708-C-A 11173032-C-A **
2806240-C-G 2938199-C-G **
15734251-C-A 13622371-C-A **
16267280-A-G 14155400-A-G **
7534668-T-A 7666627-T-A **
13856660-TTGGAA-T 11735954-TTGGAA-T 5×TGGAA**
2806239-A-C 2938198-A-C **
7704861-C-A 7836820-C-A **
6919819-C-A 7051778-C-A **
18714115-C-A 16602235-C-A 9×T**
26465392-G-A 24319245-G-A P1_Y1 9×A**
28517324-C-A 26371177-C-A **
14387770-C-A 12267066-C-A **
25995539-TACAGGA-T 23849392-TACAGGA-T P1_Y1 **
28537868-C-A 26391721-C-A **
6402768-G-C 6534727-G-C **
19745043-C-A 17633163-C-A P5_Prx **
14065526-C-A 11944820-C-A **
14030220-C-A 11909514-C-A **
13821322-C-A 11700616-C-A **
11007360-C-A **
7211166-C-A 7343125-C-A **
10959461-T-C FT438245 **
16827322-C-A 14715442-C-A **
22165162-C-A 20003276-C-A **
6648641-AC-T 6780600-AC-T **
4444824-C-A 4576783-C-A **
5586772-G-T 5718731-G-T **
24636470-T-G 22490323-T-G P3_t2 **
11650995-T-A **
15685145-G-T 13573265-G-T **
10682485-T-G **
23789338-C-T 21627452-C-T **
10892138-A-T **
16666106-A-T 14554226-A-T **
7155493-C-T 7287452-C-T **
13884824-C-A 11764118-C-A **
18573561-C-A 16461681-C-A **
8697969-C-A 8829928-C-A **
16274191-C-A 14162311-C-A **
18263714-G-A 16151834-G-A **
10855933-G-T **
19465596-G-T 17353716-G-T **
26122071-G-T 23975924-G-T P1_Y1 **
28706244-GTT-G 26560097-GTT-G 13×T**
15186612-G-A 13074698-G-A **
15430365-C-A 13318485-C-A **
26249039-C-A 24102892-C-A P1_Y1 5×AAAT**
19510312-G-T 17398432-G-T **
10973947-C-T **
16427318-C-A 14315438-C-A **
6731220-T-A 6863179-T-A **
24302840-A-G 22156693-A-G P3_t1 **
7011523-C-A 7143482-C-A **
19745023-G-C 17633143-G-C P5_Prx **
18871824-G-A 16759944-G-A **
14721506-C-A 12609574-C-A **
6934697-A-C 7066656-A-C **
17735445-C-A 15623565-C-A **
8295639-C-A 8427598-C-A **
10662883-C-A **
10973962-C-G **
18682704-C-A 16570824-C-A **
3849102-G-A 3981061-G-A **
10926726-T-C **
18263721-A-C 16151841-A-C **
18263745-C-T 16151865-C-T **
18263746-A-G 16151866-A-G **
21709134-C-A 19547248-C-A **
18951869-C-A 16839989-C-A **
23425449-C-A 21263563-C-A **
7320340-C-A 7452299-C-A **
10888558-C-A **
23512280-G-T 21350394-G-T **
23512284-G-T 21350398-G-T **
23188229-C-A 21026343-C-A **
11022087-A-T **
18710400-C-A 16598520-C-A **
18263697-CA-C 16151817-CA-C **
13962095-A-C 11841389-A-C **
13571653-C-G 11415977-C-G **
11649578-C-G **
23128024-C-A 20966138-C-A Y110710 **
21673274-C-A 19511388-C-A **
10693169-C-A **
11025133-C-T **
9830614-G-T 9993005-G-T **
14451187-C-A 12330460-C-A **
3640482-CCTTTCTTTCTTT-C 3772441-CCTTTCTTTCTTT-C 13×CTTT**
7101015-C-A 7232974-C-A **
25998918-G-T 23852771-G-T P1_Y1 **
18653317-T-C 16541437-T-C **
10947299-A-T **
7621906-C-T 7753865-C-T **
15370743-C-A 13258863-C-A **
19346680-A-G 17234800-A-G **
17718337-C-A 15606457-C-A **
9436953-C-A 9599344-C-A **
14501994-C-A 12390199-C-A **
22011419-A-G 19849533-A-G **
20001334-A-C 17889454-A-C P5_Prx **
15420226-C-A 13308346-C-A **
16144797-T-TA 14032917-T-TA P8_Dst **
22176163-C-A 20014277-C-A **
22316207-T-A 20154321-T-A DYZ19 **
3990461-T-A 4122420-T-A **
18853244-C-A 16741364-C-A **
15186614-C-A 13074700-C-A **
5863970-C-A 5995929-C-A **
10864606-C-A **
19042628-C-T 16930748-C-T **
10865460-T-C **
5267531-G-T 5399490-G-T **
16720448-G-T 14608568-G-T **
16003307-C-A 13891427-C-A **
21953182-C-A 19791296-C-A **
10813346-C-A **
13493187-C-A 11337511-C-A FT444305 **
10783591-C-A **
14495792-C-A 12383989-C-A **
22236904-C-T 20075018-C-T DYZ19 **
22236905-T-G 20075019-T-G DYZ19 **
10947327-C-G **
13295263-T-C 11139587-T-C **
14041080-C-A 11920374-C-A **
10888292-C-A **
2789250-A-G 2921209-A-G **
2791457-G-A 2923416-G-A **
2842996-CA-C 2974955-CA-C **
2845817-G-C 2977776-G-C **
2915206-C-A 3047165-C-A **
2915311-C-T 3047270-C-T **
3047578-T-C 3179537-T-C FT227954 **
3122362-A-G 3254321-A-G **
3122371-T-G 3254330-T-G **
3176951-G-T 3308910-G-T **
3205022-A-T 3336981-A-T **
3284127-C-A 3416086-C-A **
3388661-T-C 3520620-T-C **
3409145-C-A 3541104-C-A **
3610182-C-A 3742141-C-A **
3689159-G-A 3821118-G-A **
3804756-AAAAAAT-A 3936715-AAAAAAT-A **
4016946-G-C 4148905-G-C **
4062710-T-G 4194669-T-G **
4083913-C-A 4215872-C-A **
4223893-T-G 4355852-T-G **
4241415-T-A 4373374-T-A **
4351281-C-A 4483240-C-A **
4417706-A-T 4549665-A-T **
4417796-G-T 4549755-G-T **
4460218-C-A 4592177-C-A **
4460232-A-G 4592191-A-G **
4534523-C-T 4666482-C-T **
4540288-G-A 4672247-G-A **
4560744-G-T 4692703-G-T **
4607330-C-T 4739289-C-T **
4616546-G-A 4748505-G-A FT84516 **
4616563-C-A 4748522-C-A **
4626105-C-A 4758064-C-A **
4626721-C-T 4758680-C-T **
4902194-C-A 5034153-C-A **
4902209-A-T 5034168-A-T **
4920334-C-A 5052293-C-A **
4928869-C-A 5060828-C-A **
4960419-C-A 5092378-C-A **
4968207-C-A 5100166-C-A **
5172459-G-T 5304418-G-T **
5532669-A-G 5664628-A-G **
5532671-T-G 5664630-T-G **
5537705-A-T 5669664-A-T **
5698698-G-T 5830657-G-T **
5713051-C-T 5845010-C-T **
5727216-C-A 5859175-C-A **
5728192-C-G 5860151-C-G **
5785544-C-A 5917503-C-A **
5800267-A-C 5932226-A-C **
5851252-C-A 5983211-C-A **
5853610-A-T 5985569-A-T **
5867454-C-A 5999413-C-A **
6025809-A-T 6157768-A-T **
6414081-G-A 6546040-G-A **
6424867-C-A 6556826-C-A **
6452727-G-T 6584686-G-T **
6452836-A-C 6584795-A-C **
6486377-G-T 6618336-G-T **
6731229-T-A 6863188-T-A **
6856672-G-T 6988631-G-T **
6856685-A-C 6988644-A-C **
6934706-T-A 7066665-T-A **
7084339-C-A 7216298-C-A **
7084503-C-A 7216462-C-A **
7085689-T-C 7217648-T-C **
7110580-C-A 7242539-C-A **
7113881-A-C 7245840-A-C **
7140980-G-T 7272939-G-T **
7197595-G-A 7329554-G-A **
7197601-A-G 7329560-A-G **
7229124-TA-T 7361083-TA-T **
7235027-T-A 7366986-T-A **
7235045-A-G 7367004-A-G FT33781 **
7235060-A-G 7367019-A-G **
7235084-A-C 7367043-A-C **
7235138-T-A 7367097-T-A **
7237929-C-G 7369888-C-G **
7360813-C-A 7492772-C-A **
7392263-T-G 7524222-T-G **
7414261-G-C 7546220-G-C **
7418491-G-T 7550450-G-T **
7578995-C-A 7710954-C-A **
7664689-T-G 7796648-T-G **
7704584-A-G 7836543-A-G **
7723732-G-A 7855691-G-A **
7864264-T-G 7996223-T-G **
8085538-GA-G 8217497-GA-G **
8293360-G-T 8425319-G-T **
8293365-A-G 8425324-A-G **
8343157-A-G 8475116-A-G **
8661080-A-G 8793039-A-G **
9108089-C-CAT **
8988613-G-C 9151004-G-C **
9564530-A-C 9726921-A-C IR3_Prx **
9618373-T-C 9780764-T-C IR3_Prx **
9724829-TAA-T 9887220-TAA-T IR3_Prx 10×A**
9830961-A-G 9993352-A-G **
9852751-C-A 10015142-C-A **
9934289-C-A 10096680-C-A **
9962577-C-A 10124968-C-A **
9968339-G-A 10130730-G-A 15×T**
10005975-T-A 10168366-T-A **
10012465-C-A 10174856-C-A **
10033960-C-A 10196351-C-A **
10046412-G-C 10208803-G-C **
10648192-G-C **
10648196-T-C **
10660190-G-C **
10667996-G-A **
10668005-A-C **
10668009-C-A **
10668518-C-A **
10671673-A-C **
10672761-C-T **
10678964-C-A **
10682486-C-A **
10693072-T-A **
10744532-C-CCATTCCACTCCACT **
10776044-C-A **
10776506-C-T **
10777710-C-A **
10795900-C-A **
10797816-G-T **
10800617-C-A **
10801384-T-G **
10821883-A-G **
10827708-G-T **
10863725-A-T **
10869330-A-C **
10889174-A-T **
10889179-C-T **
10893905-A-T **
10912657-C-T **
10925652-TCCACTCCATC-T **
10926709-A-AC **
10926710-T-TACAC **
10926717-C-T **
10947307-C-G **
10947338-C-CACACT **
10947342-C-T **
10959462-T-C **
10972042-A-C **
10973927-C-T **
10973951-T-C **
10974767-C-A **
10982943-T-C **
10986221-C-A **
10993221-T-A **
10993227-T-G **
11018842-C-T **
11022065-C-G **
11022068-T-TTCCA **
11025108-C-A **
11025306-T-G **
11028271-T-A **
11032997-C-A **
13198854-T-C 11043178-T-C **
13217472-C-A 11061796-C-A **
13224526-C-A 11068850-C-A **
13226796-T-C 11071120-T-C **
13236692-C-A 11081016-C-A **
13295277-A-C 11139601-A-C **
13295960-A-G 11140284-A-G **
13317456-C-A 11161780-C-A **
13385064-A-T 11229388-A-T **
13385066-C-T 11229390-C-T **
13474019-G-T 11318343-G-T **
13481972-T-G 11326296-T-G **
13523621-T-G 11367945-T-G **
13558359-C-A 11402683-C-A FT92449 **
13566051-A-G 11410375-A-G **
13584706-C-A 11429030-C-A **
13641118-C-T 11485442-C-T **
13644064-C-A 11488388-C-A **
11650962-G-C **
11650969-A-C **
11650979-CCCAAATGG-C **
11650989-GCA-G **
11650996-T-G **
11677808-A-C **
11677840-A-C **
11677849-A-C **
11677867-C-T **
13821430-A-C 11700724-A-C **
13857829-T-C 11737123-T-C **
13885903-T-G 11765197-T-G **
13886193-C-A 11765487-C-A **
13898673-G-T 11777967-G-T **
13923116-T-C 11802410-T-C **
13926402-A-G 11805696-A-G **
13926906-C-A 11806200-C-A **
14052936-C-A 11932230-C-A **
14070198-G-T 11949492-G-T **
14073256-G-T 11952550-G-T **
14075367-C-A 11954661-C-A **
14235914-C-A 12115208-C-A **
14241915-G-A 12121209-G-A **
14296856-A-T 12176150-A-T **
14359878-C-A 12239173-C-A **
14387754-T-C 12267050-T-C **
14449795-A-T 12329068-A-T **
14485957-G-C 12365226-G-C **
14527718-C-A 12415919-C-A **
14530568-C-A 12418769-C-A **
14531396-T-A 12419597-T-A **
14558031-T-G 12446232-T-G **
14605734-G-A 12493936-G-A **
14609778-C-G 12497980-C-G **
14703676-TAATA-T 12591742-TAATA-T **
14703685-TG-T 12591751-TG-T **
14716555-G-T 12604623-G-T **
14949159-C-A 12837233-C-A **
14988927-T-A 12876993-T-A **
15137962-A-T 13026049-A-T **
15178568-TA-T 13066654-TA-T **
15258545-C-A 13146629-C-A **
15287996-C-A 13176095-C-A **
15315436-T-G 13203541-T-G **
15355222-C-A 13243341-C-A **
15386343-T-A 13274463-T-A **
15446871-C-A 13334991-C-A **
15541923-C-A 13430043-C-A **
15574990-C-A 13463110-C-A **
15655525-C-A 13543645-C-A **
15665586-G-T 13553706-G-T **
15696830-G-T 13584950-G-T **
15743141-C-A 13631261-C-A **
15762173-C-A 13650293-C-A **
15798178-C-A 13686298-C-A **
15871577-C-A 13759697-C-A **
15971342-C-A 13859462-C-A **
15995270-T-A 13883390-T-A **
16003893-G-C 13892013-G-C **
16010209-C-A 13898329-C-A **
16033509-G-C 13921629-G-C **
16033511-G-T 13921631-G-T **
16033620-C-A 13921740-C-A **
16063541-C-A 13951661-C-A **
16065085-G-C 13953205-G-C **
16090852-C-A 13978972-C-A **
16171466-A-G 14059586-A-G **
16316817-C-A 14204937-C-A **
16379178-G-A 14267298-G-A **
16437504-C-A 14325624-C-A **
16506200-C-T 14394320-C-T FGC2345 **
16516354-G-GA 14404474-G-GA **
16539826-G-T 14427946-G-T **
16541009-C-A 14429129-C-A **
16666105-G-T 14554225-G-T **
16703613-A-G 14591733-A-G **
16704438-A-T 14592558-A-T Z32922 **
16710184-C-A 14598304-C-A **
16760161-C-T 14648281-C-T **
16828892-C-T 14717012-C-T **
16868752-T-C 14756872-T-C **
16926635-C-A 14814755-C-A **
16994540-G-T 14882660-G-T **
17056792-G-A 14944912-G-A **
17071282-A-T 14959402-A-T **
17083444-G-T 14971564-G-T **
17098826-C-A 14986946-C-A **
17130456-T-A 15018576-T-A **
17146475-C-A 15034595-C-A **
17270661-C-A 15158781-C-A **
17270754-C-A 15158874-C-A **
17362808-T-A 15250928-T-A **
17370836-C-A 15258956-C-A **
17426394-T-G 15314514-T-G **
17426397-A-T 15314517-A-T **
17426398-C-G 15314518-C-G **
17449294-G-T 15337414-G-T **
17449761-T-C 15337881-T-C **
17465028-G-C 15353148-G-C **
17580960-G-A 15469080-G-A **
17692104-G-T 15580224-G-T **
17788685-C-A 15676805-C-A **
17997538-C-G 15885658-C-G P7_Gap **
18143788-T-C 16031908-T-C **
18188675-G-T 16076795-G-T **
18190828-C-A 16078948-C-A **
18212354-C-A 16100474-C-A **
18263681-G-A 16151801-G-A **
18263697-C-T 16151817-C-T **
18263709-C-T 16151829-C-T **
18263710-T-G 16151830-T-G **
18263719-G-A 16151839-G-A **
18263722-G-T 16151842-G-T **
18277841-C-A 16165961-C-A P6_Prx **
18297039-A-AG 16185159-A-AG P6_Prx **
18340676-G-T 16228796-G-T P6_Prx **
18653331-C-T 16541451-C-T **
18653410-A-T 16541530-A-T **
18703246-A-G 16591366-A-G **
18758947-TC-T 16647067-TC-T **
18758954-T-C 16647074-T-C FTB82785 **
18758957-T-TCC 16647077-T-TCC **
18758963-T-A 16647083-T-A **
18825659-GT-G 16713779-GT-G **
18853513-C-A 16741633-C-A **
18931896-C-A 16820016-C-A **
18951876-A-G 16839996-A-G **
18953058-A-G 16841178-A-G **
18961478-A-G 16849598-A-G **
18988809-G-T 16876929-G-T **
19041121-G-T 16929241-G-T **
19053219-C-A 16941339-C-A **
19071470-C-A 16959590-C-A **
19112404-T-C 17000524-T-C **
19112411-A-G 17000531-A-G **
19122042-T-C 17010162-T-C **
19122050-GC-G 17010170-GC-G **
19122053-T-TG 17010173-T-TG **
19125619-C-T 17013739-C-T Z34464 **
19223160-C-A 17111280-C-A **
19389696-T-G 17277816-T-G **
19416594-C-A 17304714-C-A **
19510300-A-TT 17398420-A-TT **
19745041-T-A 17633161-T-A P5_Prx **
19745050-TG-T 17633170-TG-T P5_Prx **
19843021-A-G 17731141-A-G P5_Prx **
20012742-T-TGA 17900862-T-TGA P5_Prx **
20022476-A-T 17910596-A-T P5_Prx **
20664933-CA-C 18503047-CA-C P4_Prx **
21208755-C-A 19046869-C-A **
21238200-C-A 19076314-C-A **
21239064-ATTGCGGGCAGGC-A 19077178-ATTGCGGGCAGGC-A **
21276816-C-A 19114930-C-A **
21348892-T-A 19187006-T-A **
21348894-A-C 19187008-A-C **
21348895-G-A 19187009-G-A **
21387201-T-A 19225315-T-A **
21555595-T-A 19393709-T-A **
21588138-G-T 19426252-G-T **
21708267-A-G 19546381-A-G FGC13535 **
21788777-AT-A 19626891-AT-A **
21856489-C-T 19694603-C-T **
21874953-G-A 19713067-G-A **
21891069-C-G 19729183-C-G **
21984094-G-A 19822208-G-A **
22011428-G-C 19849542-G-C **
22011429-G-A 19849543-G-A **
22059084-A-G 19897198-A-G **
22135499-T-C 19973613-T-C **
22164513-A-C 20002627-A-C **
22211994-C-A 20050108-C-A **
22240511-C-A 20078625-C-A DYZ19 **
22360205-C-T 20198319-C-T DYZ19 **
22360221-T-A 20198335-T-A DYZ19 **
22548261-A-G 20386375-A-G **
22662171-T-C 20500285-T-C **
22703593-CTCAAAA-C 20541707-CTCAAAA-C **
22730540-C-A 20568654-C-A FT51467 **
22775493-T-C 20613607-T-C **
22810820-C-A 20648934-C-A **
22829480-C-A 20667594-C-A **
23046051-T-C 20884165-T-C **
23082090-C-A 20920204-C-A **
23185949-C-T 21024063-C-T **
23185969-C-T 21024083-C-T **
23188576-A-T 21026690-A-T **
23205339-G-T 21043453-G-T **
23291315-G-T 21129429-G-T **
23345810-T-C 21183924-T-C **
23465034-C-T 21303148-C-T **
23512277-G-A 21350391-G-A **
23569203-C-A 21407317-C-A **
23773554-A-T 21611668-A-T **
23779907-T-C 21618021-T-C **
23837704-T-C 21675818-T-C **
24262115-T-G 22115968-T-G P3_b1 **
24389772-C-G 22243625-C-G FT85282 **
24406432-C-A 22260285-C-A **
24509309-C-A 22363162-C-A **
24614272-G-T 22468125-G-T P3_t2 **
24627796-T-TGC 22481649-T-TGC P3_t2 **
25995502-A-G 23849355-A-G P1_Y1 **
25995513-T-A 23849366-T-A P1_Y1 **
25995548-G-GTC 23849401-G-GTC P1_Y1 **
25998907-T-TC 23852760-T-TC P1_Y1 **
26066372-T-C 23920225-T-C P1_Y1 **
26066487-T-C 23920340-T-C P1_Y1 **
26308442-C-A 24162295-C-A P1_Y1 **
27398508-C-A 25252361-C-A P1_g3 **
27424008-T-A 25277861-T-A P1_g3 **
28243695-AGGAG-A 26097548-AGGAG-A P1_b4 **
28496150-A-G 26350003-A-G **
28500881-C-A 26354734-C-A **
28518944-T-G 26372797-T-G **
28538394-T-C 26392247-T-C **
28547446-T-G 26401299-T-G **
28598485-A-C 26452338-A-C **
28609594-A-T 26463447-A-T **
28636063-C-A 26489916-C-A **
28649270-C-A 26503123-C-A **
28745109-C-G 26598962-C-G **
56869868-C-A **
19858-T-C **
16107432-C-T 13995552-C-T P8_Prx ***
16107441-A-T 13995561-A-T P8_Prx ***
25462345-GACACACACAC-G 23316198-GACACACACAC-G P2_r2 22×AC***
13451746-C-CTCCGT 11296070-C-CTCCGT ***
13660258-G-A 11504582-G-A 5×TGGAA***
26228688-TC-T 24082541-TC-T P1_Y1 ***
58973871-T-A 56827724-T-A ***
13453592-T-A 11297916-T-A ***
21306617-AG-A 19144731-AG-A ***
27127747-CTTTCTT-C 24981600-CTTTCTT-C P1_g3 ***
58844655-G-C 56746216-C-G ***
13138343-T-C 10627829-T-C ***
16107442-G-T 13995562-G-T P8_Prx 30×T***
9968247-T-A 10130638-T-A ***
13832501-T-A,G 11711795-T-A,G ***
13714049-A-G 11558373-A-G ***
13714050-T-A 11558374-T-A ***
13813396-G-T 11692690-G-T ***
2888870-C-CAA 3020829-C-CAA 32×A***
3131455-C-T 3263414-C-T ***
3131457-ATCTCTTCTCT-A,G 3263416-ATCTCTTCTCT-A,G 14×TCTCT***
3131470-T-C 3263429-T-C ***
6226056-T-C 6358015-T-C IR3_Dst ******
9344388-C-G 9506779-C-G ***
9654338-A-G 9816729-A-G IR3_Prx ***
13452873-G-C,GCATTC 11297197-G-C,GCATTC 14×CATTC***
13696385-AATCCATT-A 11540709-AATCCATT-A ***
13697461-A-T 11541785-A-T ***
13714029-A-C 11558353-A-C ***
13714034-G-T 11558358-G-T ***
13821158-GGCAAA-G,GGAATCCACCC 11700452-GGCAAA-G,GGAATCCACCC ***
13826106-CGAATG-T 11705400-CGAATG-T ***
13838226-CAGATG-C,G 11717520-CAGATG-C,G ***
13846635-G-C 11725929-G-C ***
13866595-A-C 11745889-A-C ***
13868365-G-T 11747659-G-T ***
18370847-C-CT,T 16258967-C-CT,T P6_Prx 25×T***
22250213-ACAGCACTTAAGGTGTTATATC-A 20088327-ACAGCACTTAAGGTGTTATATC-A DYZ19 ***
22264401-G-C 20102515-G-C DYZ19 ***
22423336-T-A 20261450-T-A DYZ19 ***
22427295-TGAGTGTTACAGCATTTAAAGGTGTTATGTCCA-T 20265409-TGAGTGTTACAGCATTTAAAGGTGTTATGTCCA-T DYZ19 ***
22427707-G-T 20265821-G-T DYZ19 ***
24135455-C-CTGTTT 21989308-C-CTGTTT P3_b1 4×TGTTT***
24935618-T-A 22789471-T-A g1 ***
26009475-TTCTC-T 23863328-TTCTC-T P1_Y1 ***
26902335-G-A 24756188-G-A P1_r3 ***
28792148-T-A 26646001-T-A ***
28796275-AGTGGG-A 26650128-AGTGGG-A ***
28801679-A-G 26655532-A-G ***
28801699-A-G 26655552-A-G ***
58973867-T-A 56827720-T-A ***
2841103-A-T 2973062-A-T ***
14642440-G-T 12530509-G-T ***
21503994-A-AT,T 19342108-A-AT,T 19×T***
25176850-C-CT,T 23030703-C-CT,T g1 30×T***
7615389-C-A 7747348-C-A ***
17313365-G-A 15201485-G-A ***
21737920-A-C 19576034-A-C BY7116 ***
6368952-G-T 6500911-G-T ***
10988507-C-G,T ***
10988514-CCATTA-C,CCCTTA ***
11018867-C-A ***
5170446-G-A 5302405-G-A ***
8704014-C-T 8835973-C-T ***
9654334-A-G 9816725-A-G IR3_Prx ***
9900313-G-A 10062704-G-A ***
10686666-C-A ***
10693252-T-C ***
10974187-A-G ***
11018869-T-A ***
13459394-T-C 11303718-T-C ***
13932746-T-C 11812040-T-C ***
13996095-C-A 11875389-C-A ***
14030178-C-A 11909472-C-A FT101579 ***
14529257-T-G 12417458-T-G ***
15334414-C-A 13222532-C-A ***
16048076-C-A 13936196-C-A ***
16457943-C-A 14346063-C-A ***
16921298-T-C 14809418-T-C ***
17056850-G-T 14944970-G-T ***
17277460-C-A 15165580-C-A ***
19053084-C-A 16941204-C-A ***
21153529-G-T 18991643-G-T ***
22100769-C-T 19938883-C-T FT302580 ***
22176907-C-A 20015021-C-A ***
56844045-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.