Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC5494 > FGC5561 > Z16503 > Z16502 > Z17653 > L1444 > A1273

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
276351
BigY2
276351
28816649-G-T 26670502-G-T A*
28816613-C-A 26670466-C-A A*
13687897-G-T 11532221-G-T A*
13687914-C-A 11532238-C-A A*
13687867-G-T 11532191-G-T A*
28817439-C-A 26671292-C-A A*
18743506-A-G 16631626-A-G A1277 YY++
22228477-T-A 20066591-T-A A1278 DYZ19 ++
23161547-T-C 20999661-T-C A1279 Y++
13803546-T-A 11682840-T-A A1275 +**
17530172-G-T 15418292-G-T A1276 YY++
15746956-C-A 13635076-C-A YY***
16246308-G-T 14134428-G-T **
16269403-A-C 14157523-A-C **
16244406-G-T 14132526-G-T **
16284266-T-G 14172386-T-G **
16298358-G-C 14186478-G-C **
16241922-T-C 14130042-T-C **
16309019-G-A 14197139-G-A **
16229903-C-A 14118023-C-A **
16192820-G-T 14080940-G-T **
16212642-G-T 14100762-G-T **
16210566-C-A 14098686-C-A **
16316867-T-C 14204987-T-C **
16181474-G-T 14069594-G-T **
16180898-A-C 14069018-A-C **
16174010-C-A 14062130-C-A **
16151806-A-AGATATAAATAT 14039926-A-AGATATAAATAT P8_Dst **
16146570-G-T 14034690-G-T P8_Dst **
16146495-G-T 14034615-G-T P8_Dst **
16141921-G-T 14030041-G-T P8_Dst **
16093540-A-C 13981660-A-C **
16077058-G-C 13965178-G-C **
16072936-C-T 13961056-C-T **
16071916-G-A 13960036-G-A **
16309045-AC-A 14197165-AC-A **
16290939-CAT-C 14179059-CAT-C **
16370949-G-T 14259069-G-T **
16497947-A-C 14386067-A-C **
16602905-C-A 14491025-C-A **
16602577-T-C 14490697-T-C **
16596004-A-T 14484124-A-T **
16596002-C-A 14484122-C-A **
16593914-T-G 14482034-T-G **
16589252-T-C 14477372-T-C **
16589230-A-G 14477350-A-G **
16568688-C-T 14456808-C-T **
16568684-A-C 14456804-A-C **
16568679-A-T 14456799-A-T **
16553739-C-A 14441859-C-A **
16539556-A-C 14427676-A-C **
16527967-A-C 14416087-A-C **
16505579-T-A 14393699-T-A **
16488181-A-C 14376301-A-C **
16058262-T-C 13946382-T-C **
16432562-C-G 14320682-C-G **
16406206-C-A 14294326-C-A **
16417456-C-A 14305576-C-A **
16417553-G-T 14305673-G-T **
16418469-A-T 14306589-A-T **
16423790-T-G 14311910-T-G **
16432484-C-A 14320604-C-A **
16440905-C-A 14329025-C-A **
16485743-C-T 14373863-C-T **
16440906-C-A 14329026-C-A **
16441109-C-A 14329229-C-A **
16445490-C-T 14333610-C-T **
16447191-A-C 14335311-A-C **
16470316-T-G 14358436-T-G **
16478333-C-A 14366453-C-A **
16375319-C-A 14263439-C-A **
16005552-C-A 13893672-C-A **
16021826-C-A 13909946-C-A **
15396555-T-G 13284675-T-G **
15587735-T-A 13475855-T-A **
15587717-G-A 13475837-G-A **
15562637-G-C 13450757-G-C **
15562591-C-A 13450711-C-A **
15550190-T-G 13438310-T-G **
15471039-C-A 13359159-C-A **
15442209-C-A 13330329-C-A **
15433613-G-T 13321733-G-T **
15430753-G-T 13318873-G-T **
15425173-C-A 13313293-C-A **
15422904-C-T 13311024-C-T **
15422902-A-G 13311022-A-G **
15396571-G-T 13284691-G-T **
15394406-C-G 13282526-C-G **
15623309-C-A 13511429-C-A **
15386639-G-T 13274759-G-T **
15336937-A-C 13225055-A-C **
15330773-T-G 13218891-T-G **
15330771-A-G 13218889-A-G **
15330770-C-T 13218888-C-T **
15317466-C-A 13205572-C-A **
15313798-A-G 13201903-A-G **
15300211-G-T 13188310-G-T **
15285649-C-G 13173748-C-G **
15269592-T-C 13157681-T-C **
15259331-G-T 13147415-G-T **
15253737-C-A 13141823-C-A **
15251895-A-T 13139981-A-T **
15600179-G-T 13488299-G-T **
15650050-G-T 13538170-G-T **
16021725-C-A 13909845-C-A **
15867938-C-A 13756058-C-A **
16016808-G-T 13904928-G-T **
16603236-C-A 14491356-C-A **
15993267-A-C 13881387-A-C **
15993260-C-A 13881380-C-A **
15971722-T-G 13859842-T-G **
15964770-G-T 13852890-G-T **
15944403-C-A 13832523-C-A **
15930889-C-A 13819009-C-A **
15927116-G-T 13815236-G-T **
15926680-C-A 13814800-C-A **
15899448-G-T 13787568-G-T **
15880118-T-G 13768238-T-G **
15880107-G-T 13768227-G-T **
15867016-TG-T 13755136-TG-T **
15660950-C-A 13549070-C-A **
15864026-C-G 13752146-C-G **
15862333-T-G 13750453-T-G **
15851042-G-C 13739162-G-C **
15847570-G-T 13735690-G-T **
15821540-C-T 13709660-C-T **
15821536-G-A 13709656-G-A **
15791635-C-A 13679755-C-A **
15787958-G-T 13676078-G-T **
15787923-G-T 13676043-G-T **
15787884-G-T 13676004-G-T **
15755025-C-A 13643145-C-A **
15713353-C-A 13601473-C-A **
15677684-G-A 13565804-G-A **
15662414-A-G 13550534-A-G **
16603214-C-A 14491334-C-A **
16692883-G-T 14581003-G-T **
16640375-G-T 14528495-G-T **
17408964-G-T 15297084-G-T **
17494663-G-T 15382783-G-T **
17494155-C-A 15382275-C-A **
17489709-C-A 15377829-C-A **
17477183-G-T 15365303-G-T **
17474714-A-C 15362834-A-C **
17465832-T-C 15353952-T-C **
17444142-G-T 15332262-G-T **
17421033-A-C 15309153-A-C **
17413433-G-T 15301553-G-T **
17412216-C-A 15300336-C-A **
17409506-T-A 15297626-T-A **
17408966-G-T 15297086-G-T **
17408965-G-T 15297085-G-T **
17407860-C-A 15295980-C-A **
17496391-C-A 15384511-C-A **
17399546-T-C 15287666-T-C **
17384359-C-A 15272479-C-A **
17381256-A-C 15269376-A-C **
17381238-C-A 15269358-C-A **
17380453-C-A 15268573-C-A **
17380116-C-CTCCGAGCACA 15268236-C-CTCCGAGCACA **
17376343-G-T 15264463-G-T **
17376335-G-T 15264455-G-T **
17376234-C-A 15264354-C-A **
17368311-C-A 15256431-C-A **
17347484-C-G 15235604-C-G **
17317386-C-A 15205506-C-A **
17314649-G-T 15202769-G-T **
17496378-C-A 15384498-C-A **
17500770-T-C 15388890-T-C **
17295957-TA-T 15184077-TA-T **
17701482-G-T 15589602-G-T **
17774969-TC-T 15663089-TC-T **
17774967-T-C 15663087-T-C **
17774965-T-TA 15663085-T-TA **
17774960-A-G 15663080-A-G **
17774959-A-G 15663079-A-G **
17774935-A-T 15663055-A-T **
17774923-C-A 15663043-C-A **
17774014-G-T 15662134-G-T **
17770140-C-A 15658260-C-A **
17751892-C-A 15640012-C-A **
17746080-C-A 15634200-C-A **
17721099-T-C 15609219-T-C **
17703334-C-A 15591454-C-A **
17682585-C-A 15570705-C-A **
17504006-A-C 15392126-A-C **
17646864-G-T 15534984-G-T **
17646849-G-T 15534969-G-T **
17646796-G-T 15534916-G-T **
17636676-G-T 15524796-G-T **
17633844-C-A 15521964-C-A **
17632981-C-A 15521101-C-A **
17628768-G-C 15516888-G-C **
17618487-C-A 15506607-C-A **
17610242-T-C 15498362-T-C **
17602435-G-T 15490555-G-T **
17580320-C-A 15468440-C-A **
17579596-C-A 15467716-C-A **
17550807-G-A 15438927-G-A **
17546342-G-C 15434462-G-C **
17313367-A-C 15201487-A-C **
17274218-G-T 15162338-G-T **
16640385-T-G 14528505-T-G **
16811123-G-T 14699243-G-T **
17000798-C-A 14888918-C-A **
16982723-C-A 14870843-C-A **
16968100-T-C 14856220-T-C **
16968085-G-A 14856205-G-A **
16968069-T-A 14856189-T-A **
16948552-G-T 14836672-G-T **
16943580-G-T 14831700-G-T **
16901048-C-A 14789168-C-A **
16865127-T-G 14753247-T-G **
16859281-C-G 14747401-C-G **
16836771-G-T 14724891-G-T **
16826781-G-A 14714901-G-A **
16822288-C-A 14710408-C-A **
16811091-C-A 14699211-C-A **
17004597-C-T 14892717-C-T **
16789780-T-G 14677900-T-G **
16775573-C-A 14663693-C-A **
16774397-G-T 14662517-G-T **
16774393-G-T 14662513-G-T **
16765729-C-A 14653849-C-A **
16757290-G-T 14645410-G-T **
16749972-C-A 14638092-C-A **
16738023-A-C 14626143-A-C **
16702949-G-T 14591069-G-T **
16696292-G-T 14584412-G-T **
15228993-C-A 13117079-C-A **
16663388-C-A 14551508-C-A **
16640411-C-A 14528531-C-A **
17003204-C-A 14891324-C-A **
17027043-C-A 14915163-C-A **
17253971-T-C 15142091-T-C **
17157776-G-T 15045896-G-T **
17253954-G-T 15142074-G-T **
17240560-G-C 15128680-G-C **
17231528-G-A 15119648-G-A **
17226921-A-C 15115041-A-C **
17226891-C-A 15115011-C-A **
17224159-C-A 15112279-C-A **
17211715-G-C 15099835-G-C **
17206713-C-A 15094833-C-A **
17201698-C-A 15089818-C-A **
17201652-C-T 15089772-C-T **
17199466-C-A 15087586-C-A **
17188425-A-C 15076545-A-C **
17159508-C-T 15047628-C-T **
17151535-G-T 15039655-G-T **
17027085-C-G 14915205-C-G **
17149932-T-G 15038052-T-G **
17130104-A-G 15018224-A-G **
17128736-A-G 15016856-A-G **
17126058-T-C 15014178-T-C **
17120030-T-C 15008150-T-C **
17106450-A-C 14994570-A-C **
17097635-G-T 14985755-G-T **
17097521-G-T 14985641-G-T **
17071104-G-T 14959224-G-T **
17071085-G-T 14959205-G-T **
17067630-G-T 14955750-G-T **
17053378-T-G 14941498-T-G **
17052700-T-G 14940820-T-G **
17038447-C-A 14926567-C-A **
15231590-T-G 13119676-T-G **
15193830-C-A 13081916-C-A **
15222045-G-T 13110131-G-T **
13967031-T-G 11846325-T-G **
14036775-G-T 11916069-G-T **
14035305-G-T 11914599-G-T **
14027755-A-C 11907049-A-C **
14019519-A-C 11898813-A-C **
14002714-G-T 11882008-G-T **
14002681-T-G 11881975-T-G **
14002659-T-G 11881953-T-G **
14002646-T-C 11881940-T-C **
14002642-A-G 11881936-A-G **
14002641-A-C 11881935-A-C **
14000900-G-C 11880194-G-C **
13997057-G-T 11876351-G-T **
13984226-A-C 11863520-A-C **
13946363-C-G 11825657-C-G **
14048379-T-G 11927673-T-G **
13929924-C-T 11809218-C-T **
13929435-A-G 11808729-A-G **
13929396-G-T 11808690-G-T **
13922722-G-A 11802016-G-A **
13894710-C-A 11774004-C-A **
13880881-G-T 11760175-G-T **
13863687-T-G 11742981-T-G **
13862551-C-G 11741845-C-G **
13857911-G-T 11737205-G-T **
13857401-C-A 11736695-C-A **
13856337-G-C 11735631-G-C **
13847464-G-T 11726758-G-T **
13846518-CAG-C 11725812-CAG-C **
14045560-A-C 11924854-A-C **
14049925-C-A 11929219-C-A **
13816438-G-T 11695732-G-T **
14231905-C-A 12111199-C-A **
14324273-C-A 12203567-C-A **
14313795-G-T 12193089-G-T **
14311592-C-A 12190886-C-A **
14300860-C-A 12180154-C-A **
14266738-G-T 12146032-G-T **
14261668-G-A 12140962-G-A **
14253340-C-A 12132634-C-A **
14253312-A-C 12132606-A-C **
14249993-A-C 12129287-A-C **
14249976-C-T 12129270-C-T **
14243942-G-T 12123236-G-T **
14238507-A-C 12117801-A-C **
14235362-C-A 12114656-C-A **
14227492-A-C 12106786-A-C **
14050746-C-G 11930040-C-G **
14227477-A-C 12106771-A-C **
14209492-G-C 12088786-G-C **
14206277-C-T 12085571-C-T **
14200462-C-A 12079756-C-A **
14177749-C-A 12057043-C-A **
14147999-C-G 12027293-C-G **
14145448-A-C 12024742-A-C **
14141321-C-A 12020615-C-A **
14108984-G-A 11988278-G-A **
14108510-T-G 11987804-T-G **
14090941-C-A 11970235-C-A **
14081408-G-T 11960702-G-T **
14050810-A-G 11930104-A-G **
13833231-G-T 11712525-G-T **
13816423-G-T 11695717-G-T **
14339140-C-A 12218435-C-A **
13422432-G-T 11266756-G-T **
13481180-C-A 11325504-C-A **
13481126-C-A 11325450-C-A **
13478970-T-C 11323294-T-C **
13477435-C-A 11321759-C-A **
13470354-G-T 11314678-G-T **
13465528-C-A 11309852-C-A **
13465478-C-A 11309802-C-A **
13465141-G-T 11309465-G-T **
13464767-G-T 11309091-G-T **
13463646-T-G 11307970-T-G **
13462432-G-T 11306756-G-T **
13448230-C-A 11292554-C-A **
13435505-C-G 11279829-C-G **
13409711-C-A 11254035-C-A **
13483173-A-G 11327497-A-G **
13394970-T-G 11239294-T-G **
13394874-G-T 11239198-G-T **
13361265-C-A 11205589-C-A **
13355461-A-C 11199785-A-C **
13316379-C-A 11160703-C-A **
13316340-C-A 11160664-C-A **
13312796-C-A 11157120-C-A **
13287421-G-T 11131745-G-T **
13239305-T-C 11083629-T-C **
13229461-G-A 11073785-G-A **
13224084-C-G 11068408-C-G **
13218417-C-A 11062741-C-A **
13208191-G-C 11052515-G-C **
13481250-C-T 11325574-C-T **
13485387-T-G 11329711-T-G **
13811963-G-T 11691257-G-T **
13698603-G-T 11542927-G-T **
13803451-T-A 11682745-T-A **
11668528-G-T **
11659904-C-G **
11649518-A-C **
11644022-A-T **
11644009-A-G **
13726121-G-T 11570445-G-T **
13726115-G-T 11570439-G-T **
13713789-A-G 11558113-A-G **
13713779-G-A 11558103-G-A **
13705483-A-G 11549807-A-G **
13704882-G-T 11549206-G-T **
13700704-G-T 11545028-G-T **
13698497-G-T 11542821-G-T **
13489086-G-T 11333410-G-T **
13696795-G-T 11541119-G-T **
13676568-A-C 11520892-A-C **
13653466-C-G 11497790-C-G **
13653146-G-T 11497470-G-T **
13653131-G-T 11497455-G-T **
13642974-T-G 11487298-T-G **
13634328-T-G 11478652-T-G **
13634324-T-G 11478648-T-G **
13627089-C-A 11471413-C-A **
13597799-C-A 11442123-C-A **
13567630-C-A 11411954-C-A **
13553114-C-A 11397438-C-A **
13542744-C-A 11387068-C-A **
13504962-A-C 11349286-A-C **
14327207-C-A 12206501-C-A **
14339199-C-G 12218494-C-G **
15203334-A-C 13091420-A-C **
14943429-C-A 12831503-C-A **
15012901-G-T 12900989-G-T **
15000400-G-T 12888485-G-T **
14993042-T-G 12881127-T-G **
14984958-C-A 12873026-C-A **
14966620-C-A 12854695-C-A **
14966615-C-A 12854690-C-A **
14966613-C-A 12854688-C-A **
14966430-T-C 12854505-T-C **
14966415-T-C 12854490-T-C **
14957803-G-T 12845878-G-T **
14943438-T-G 12831512-T-G **
14943437-C-T 12831511-C-T **
14943430-T-A 12831504-T-A **
14929066-T-G 12817131-T-G **
15049287-A-G 12937378-A-G **
14927391-G-T 12815456-G-T **
14919493-T-C 12807558-T-C **
14912801-T-C 12800868-T-C **
14866062-G-GTA 12754128-G-GTA **
14846994-A-C 12735060-A-C **
14829141-C-A 12717208-C-A **
14821117-T-C 12709184-T-C **
14812604-C-A 12700675-C-A **
14812483-C-A 12700554-C-A **
14807361-G-T 12695432-G-T **
14803142-C-A 12691213-C-A **
14785452-C-A 12673522-C-A **
14780818-C-G 12668888-C-G **
15045585-G-A 12933675-G-A **
15057342-G-T 12945434-G-T **
14770060-A-T 12658129-A-T **
15180770-T-G 13068856-T-G **
15200234-T-G 13088320-T-G **
15197373-A-C 13085459-A-C **
15197343-A-C 13085429-A-C **
17807434-A-C 15695554-A-C **
15193717-T-G 13081803-T-G **
15193714-G-A 13081800-G-A **
15193712-T-C 13081798-T-C **
15193705-C-T 13081791-C-T **
15193700-C-T 13081786-C-T **
15193690-G-A 13081776-G-A **
15193687-T-C 13081773-T-C **
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7237481-A-C 7369440-A-C **
7236424-A-T 7368383-A-T **
7228462-A-C 7360421-A-C **
7228461-A-C 7360420-A-C **
7225347-C-A 7357306-C-A **
7223960-C-A 7355919-C-A **
7223617-C-A 7355576-C-A **
7208039-G-T 7339998-G-T **
7035651-A-C 7167610-A-C **
7461386-G-T 7593345-G-T IR1_L **
7389935-A-T 7521894-A-T **
7702480-CTTGTCTAAGACAACTGAAGCTGTCCAGGGGCCTGATGAGTCACCAGGAGTGTTTTTAGAA-C 7834439-CTTGTCTAAGACAACTGAAGCTGTCCAGGGGCCTGATGAGTCACCAGGAGTGTTTTTAGAA-C **
7745804-A-C 7877763-A-C **
7781520-C-A 7913479-C-A **
7626159-C-G 7758118-C-G **
7786896-C-A 7918855-C-A **
7623674-G-C 7755633-G-C **
6897463-G-T 7029422-G-T **
7623532-T-C 7755491-T-C **
7781350-T-G 7913309-T-G **
7474172-G-T 7606131-G-T IR1_L **
7786889-C-A 7918848-C-A **
7604419-C-A 7736378-C-A **
6897456-G-T 7029415-G-T **
7782800-C-A 7914759-C-A **
7705611-A-G 7837570-A-G **
7567929-C-A 7699888-C-A **
7781686-G-T 7913645-G-T **
6895669-G-C 7027628-G-C **
7771851-C-A 7903810-C-A **
6886585-G-T 7018544-G-T **
7710275-G-T 7842234-G-T **
7825620-C-A 7957579-C-A **
7756422-T-G 7888381-T-G **
7817463-C-A 7949422-C-A **
7817142-G-A 7949101-G-A **
7809448-G-C 7941407-G-C **
7461482-T-G 7593441-T-G IR1_L **
7466315-T-G 7598274-T-G IR1_L **
7636472-T-G 7768431-T-G **
7591299-C-A 7723258-C-A **
7809445-A-T 7941404-A-T **
7468044-G-T 7600003-G-T IR1_L **
7722989-A-C 7854948-A-C **
7771789-C-A 7903748-C-A **
7461458-T-G 7593417-T-G IR1_L **
7665130-C-A 7797089-C-A **
7789902-G-T 7921861-G-T **
7737049-G-T 7869008-G-T **
9167616-G-GT 9330007-G-GT 9×T***
13488861-G-C,T 11333185-G-C,T ***
14947064-C-A 12835138-C-A A10960 ***
13457702-ATTCCACTAGT-A,G 11302026-ATTCCACTAGT-A,G ***
13476925-T-A 11321249-T-A ***
6653020-C-A 6784979-C-A ***
13480417-A-C 11324741-A-C ***
23644635-T-C 21482749-T-C ***
23729710-G-T 21567824-G-T ***
20045219-A-C,G 17933339-A-C,G P5_Prx ***
13818152-T-A,G 11697446-T-A,G ***
13676749-G-C,T 11521073-G-C,T ***
13476928-C-T 11321252-C-T ***
13480400-G-A 11324724-G-A ***
13484293-C-A 11328617-C-A ***
13483383-T-C 11327707-T-C ***
13457446-C-T 11301770-C-T ***
22948114-G-A 20786228-G-A ***
17233804-T-A 15121924-T-A ***
7020429-C-T 7152388-C-T ***
13484240-C-A 11328564-C-A ***
13657056-C-G 11501380-C-G ***
28779290-C-A 26633143-C-A ***
10682506-C-CCACTA ***
13457439-T-G 11301763-T-G ***
23269587-G-T 21107701-G-T ***
23411029-C-A 21249143-C-A ***
7589390-A-C 7721349-A-C L1360 ***
17324104-TAGGAAGGA-T 15212224-TAGGAAGGA-T 4×AGGA***
6631840-C-A 6763799-C-A ***
18913092-ATT-A,AT 16801212-ATT-A,AT 14×T***
13220307-C-A 11064631-C-A ***
13677754-C-A 11522078-C-A ***
6286901-CA-C 6418860-CA-C IR3_Dst 10×A***
56836883-C-A ***
10050662-C-A 10213053-C-A ***
13478350-G-A 11322674-G-A ***
58982224-A-T 56836077-A-T ***
17319968-G-A 15208088-G-A ***
25324285-G-GT 23178138-G-GT P2_r1 11×T***
17050194-C-A 14938314-C-A ***
20712289-C-T 18550403-C-T PF1009 P4_Prx ***
8979107-T-C 9141498-T-C ***
16703339-G-T 14591459-G-T ***
16969637-A-T 14857757-A-T ***
23493594-TAA-T,TA 21331708-TAA-T,TA 12×A***
23568662-A-G 21406776-A-G ***
13234078-T-C 11078402-T-C ***
6652721-C-A 6784680-C-A ***
17270859-AC-A 15158979-AC-A ***
9986573-G-T 10148964-G-T ***
23548763-C-A 21386877-C-A ***
23495491-C-A 21333605-C-A ***
18731640-G-GA 16619760-G-GA 9×A***
13637554-C-A 11481878-C-A ***
10682488-A-T ***
17272517-T-C 15160637-T-C ***
13620448-TAA-T 11464772-TAA-T 14×A***
17289513-C-A 15177633-C-A ***
6848077-TA-T 6980036-TA-T ***
23456681-GA-G 21294795-GA-G ***
56830535-CATTCTGCTGA-C,CATTCCATTGA ***
23798137-C-A 21636251-C-A ***
15810991-G-T 13699111-G-T PR5661 ***
13475027-C-A 11319351-C-A ***
14031777-T-C 11911071-T-C ***
22283402-T-C 20121516-T-C DYZ19 ***
14373444-TC-T 12252740-TC-T ***
22292623-A-T 20130737-A-T DYZ19 ***
22321619-T-C 20159733-T-C DYZ19 ***
22362547-G-A 20200661-G-A DYZ19 ***
14031782-T-C 11911076-T-C ***
22366577-T-G 20204691-T-G DYZ19 ***
22502976-A-T 20341090-A-T DYZ19 ***
24569114-C-T 22422967-C-T P3_t2 ***
20770031-AACCT-A 18608145-AACCT-A P4_Prx ***
25246143-GCCCAGATAC-G 23099996-GCCCAGATAC-G P2_r1 ***
14031750-C-CCT 11911044-C-CCT 4×TCTT***
14031668-T-C 11910962-T-C ***
27356040-G-T 25209893-G-T P1_g3 ***
27356041-T-G 25209894-T-G P1_g3 ***
14031666-C-T 11910960-C-T 10×T***
27898408-C-CT 25752261-C-CT P1_Y2 10×T***
14031660-G-C 11910954-G-C ***
20949930-CATT-C 18788044-CATT-C P4_Dst ***
6918231-C-A 7050190-C-A ***
13878588-GAA-G 11757882-GAA-G 11×A***
6899577-C-A 7031536-C-A ***
16507239-C-G 14395359-C-G ***
6907280-C-A 7039239-C-A ***
17319948-GGAGAA-G 15208068-GGAGAA-G ***
17416399-C-A 15304519-C-A ***
18008645-C-CTTT 15896765-C-CTTT P7_Dst 30×T***
6816452-C-A 6948411-C-A ***
18255073-T-A 16143193-T-A ***
15092687-G-A 12980776-G-A CTS3645 ***
19575893-T-TTCTCTCTCTC 17464013-T-TTCTCTCTCTC P5_Prx 19×TC***
20045263-G-A 17933383-G-A P5_Prx ***
27396838-GC-G 25250691-GC-G P1_g3 ***
13312608-C-A 11156932-C-A ***
14990069-C-T 12878154-C-T ***
14610856-G-C 12499058-G-C ***
16943159-C-A 14831279-C-A ***
20045254-A-G 17933374-A-G P5_Prx ***
14515269-A-G 12403474-A-G PR5161 ***
20045262-A-G 17933382-A-G P5_Prx ***
28612904-CGT-C 26466757-CGT-C ***
28784736-A-C 26638589-A-C ***
23809490-G-T 21647604-G-T ***
13657102-C-A 11501426-C-A ***
28631793-T-C 26485646-T-C ***
28649673-C-A 26503526-C-A ***
13456028-C-G 11300352-C-G ***
13456103-C-T 11300427-C-T ***
28679245-C-A 26533098-C-A ***
23968755-A-G 21822608-A-G ***
23875978-C-A 21714092-C-A ***
16829435-C-A 14717555-C-A ***
13657097-T-A 11501421-T-A ***
13657104-T-A 11501428-T-A ***
13657089-A-T 11501413-A-T ***
13657084-A-T 11501408-A-T ***
13657081-C-G 11501405-C-G ***
13470245-T-A 11314569-T-A ***
16793270-A-C 14681390-A-C ***
13657080-G-A 11501404-G-A ***
13657068-G-A 11501392-G-A ***
13657061-GAAAGT-C 11501385-GAAAGT-C ***
17159394-C-A 15047514-C-A ***
10845631-C-A ***
28785996-GAGTGGAGTGACATGGAGT-G 26639849-GAGTGGAGTGACATGGAGT-G ***
13841477-C-T 11720771-C-T ***
13857430-T-C,G 11736724-T-C,G ***
13848936-AGAAAG-T 11728230-AGAAAG-T ***
28786671-G-GTGGAA 26640524-G-GTGGAA 5×TGGAA***
24509549-A-G 22363402-A-G ***
28818707-C-T 26672560-C-T ***
58844686-T-C 56746185-A-G ***
58974122-A-G 56827975-A-G ***
58980256-C-T 56834109-C-T ***
24452858-C-A 22306711-C-A ***
24398469-G-A 22252322-G-A ***
13839528-C-G 11718822-C-G ***
58980266-A-C 56834119-A-C ***
13828097-A-C 11707391-A-C ***
10018625-CTGA-C 10181016-CTGA-C 6×TGAT***
24569114-CT-C 22422967-CT-C P3_t2 ***
13676568-A-G 11520892-A-G ***
10019291-AAC-A 10181682-AAC-A ***
13139656-CATTCT-C 10629142-CATTCT-C ***
13657105-C-G 11501429-C-G ***
13690804-A-T 11535128-A-T ***
15199121-G-A 13087207-G-A ***
17380431-C-A 15268551-C-A ***
7527532-T-C 7659491-T-C ***
14708817-C-A 12596883-C-A ***
8491795-C-A 8623754-C-A ***
8472144-C-A 8604103-C-A ***
14724284-C-A 12612352-C-A ***
15718829-C-A 13606949-C-A ***
13448732-T-C 11293056-T-C ***
8441297-C-A 8573256-C-A ***
18602383-C-A 16490503-C-A ***
7328351-TAA-T,TA 7460310-TAA-T,TA 14×A***
8553924-C-A 8685883-C-A ***
8400433-C-A 8532392-C-A ***
18643309-C-A 16531429-C-A ***
8397703-C-A 8529662-C-A ***
14769463-C-A 12657532-C-A ***
8381441-C-A 8513400-C-A ***
8364319-C-A 8496278-C-A ***
15664111-C-A 13552231-C-A ***
7529014-C-A 7660973-C-A ***
15744302-C-A 13632422-C-A ***
21111471-TAACAAAAG-T 18949585-TAACAAAAG-T ***
7531419-C-T 7663378-C-T ***
13448744-C-A 11293068-C-A ***
21252035-C-A 19090149-C-A ***
14522146-C-A 12410347-C-A ***
14528689-C-A 12416890-C-A ***
15928397-TGC-C,T 13816517-TGC-C,T ***
8563778-T-G 8695737-T-G ***
7405894-C-A 7537853-C-A ***
13456097-T-C 11300421-T-C ***
18214937-C-A 16103057-C-A ***
14540477-C-A 12428678-C-A ***
14645789-G-A 12533853-G-A ***
56836644-T-TG ***
7426688-CAG-C 7558647-CAG-C ***
14814998-C-CT 12703069-C-CT 10×T***
22893304-C-CCTTT,CCTTTCTTT 20731418-C-CCTTT,CCTTTCTTT 17×CTTT***
14602542-C-A 12490744-C-A ***
21149090-C-A 18987204-C-A ***
18392017-C-A 16280137-C-A P6_Gap ***
15793159-G-A 13681279-G-A ***
14645386-C-A 12533455-C-A ***
8334178-C-A 8466137-C-A ***
8309839-C-A 8441798-C-A ***
21295157-C-A 19133271-C-A ***
15264269-G-C 13152359-G-C ***
4293402-C-A 4425361-C-A ***
19290964-C-A 17179084-C-A ***
8041462-C-A 8173421-C-A ***
2948534-C-A 3080493-C-A ***
18933570-T-A 16821690-T-A ***
15136364-C-A 13024451-C-A ***
7786780-T-A 7918739-T-A ***
19205854-C-A 17093974-C-A ***
15256223-C-A 13144307-C-A ***
17441175-AATATATAT-A,AATAT 15329295-AATATATAT-A,AATAT 20×AT***
2843672-C-A 2975631-C-A ***
16999167-C-A 14887287-C-A ***
7802962-GA-G,GAA 7934921-GA-G,GAA 12×A***
2813574-C-A 2945533-C-A ***
7893286-G-T 8025245-G-T ***
7893213-G-T 8025172-G-T ***
2799402-C-A 2931361-C-A ***
2707419-TAA-T,TAAA 2839378-TAA-T,TAAA 14×A***
15059959-G-A 12948051-G-A ***
18872995-C-A 16761115-C-A ***
15651373-C-A 13539493-C-A ***
15531543-C-A 13419663-C-A ***
15758339-C-A 13646459-C-A ***
8221472-C-A 8353431-C-A ***
13451170-CTGCAC-C,CTCCAT 11295494-CTGCAC-C,CTCCAT ***
15612199-TACAC-T 13500319-TACAC-T 8×AC***
14875857-C-A 12763927-C-A ***
7618560-C-A 7750519-C-A ***
19531063-C-A 17419183-C-A ***
17589957-C-A 15478077-C-A ***
14947967-C-A 12836041-C-A ***
15052469-C-A 12940560-C-A ***
7705449-C-A 7837408-C-A ***
8149930-C-A 8281889-C-A ***
18776819-C-A 16664939-C-A ***
7733908-G-A 7865867-G-A ***
10892518-C-G ***
10892519-A-G ***
7742714-C-A 7874673-C-A ***
7743147-G-A 7875106-G-A ***
11649347-C-A ***
2948206-C-A 3080165-C-A ***
14520249-C-A 12408450-C-A ***
16607163-C-G 14495283-C-G ***
17665442-C-A 15553562-C-A ***
17864756-C-A 15752876-C-A ***
14247603-C-A 12126897-C-A ***
9883594-G-T 10045985-G-T ***
9874666-G-A 10037057-G-A ***
16482281-G-GTATA 14370401-G-GTATA 11×TA***
17585452-T-C 15473572-T-C ***
16463666-C-A 14351786-C-A ***
19061914-G-T 16950034-G-T ***
22594700-A-G 20432814-A-G ***
6090797-C-A 6222756-C-A ***
22594699-G-C 20432813-G-C ***
22594689-T-C 20432803-T-C ***
14082213-C-A 11961507-C-A ***
14085745-C-A 11965039-C-A ***
16387941-G-T 14276061-G-T ***
9437661-G-A 9600052-G-A ***
17742506-C-A 15630626-C-A ***
22247206-C-A 20085320-C-A DYZ19 ***
17510315-C-A 15398435-C-A ***
22864282-C-A 20702396-C-A ***
9398288-G-T 9560679-G-T ***
18758867-C-A 16646987-C-A ***
7127183-C-A 7259142-C-A ***
11653821-G-T ***
23056508-C-A 20894622-C-A ***
6355333-G-T 6487292-G-T ***
13815092-G-T 11694386-G-T ***
22966158-C-A 20804272-C-A ***
22964002-C-A 20802116-C-A ***
22954255-G-T 20792369-G-T ***
22938799-C-A 20776913-C-A ***
16487605-C-A 14375725-C-A ***
16553069-AT-A 14441189-AT-A 8×T***
17490360-C-A 15378480-C-A ***
22914674-CAAAAAAAAA-C 20752788-CAAAAAAAAA-C 27×A***
9940464-T-A 10102855-T-A ***
7033873-C-A 7165832-C-A ***
22902870-C-A 20740984-C-A ***
13473999-C-A 11318323-C-A ***
9934326-C-A 10096717-C-A ***
16489739-A-G 14377859-A-G ***
22247185-C-G 20085299-C-G DYZ19 ***
9385778-T-C 9548169-T-C ***
8742942-G-T 8874901-G-T ***
18064860-C-A 15952980-C-A ***
21562954-T-TC 19401068-T-TC ***
8861326-C-A 8993285-C-A ***
8853046-C-A 8985005-C-A ***
14378625-C-A 12257921-C-A ***
18017160-C-T 15905280-C-T ***
8849552-C-A 8981511-C-A ***
8838135-C-A 8970094-C-A ***
21482403-C-A 19320517-C-A ***
21425145-C-A 19263259-C-A ***
21606300-C-A 19444414-C-A ***
14449428-C-A 12328701-C-A ***
8799168-C-A 8931127-C-A ***
3347149-C-A 3479108-C-A ***
7387666-C-A 7519625-C-A ***
18682423-C-A 16570543-C-A ***
8773858-CAAAAA-C,CA 8905817-CAAAAA-C,CA 16×A***
17595085-C-A 15483205-C-A ***
18150810-TGGCGGAAGAAAAAGAGGGAGCA-T 16038930-TGGCGGAAGAAAAAGAGGGAGCA-T ***
21304927-C-A 19143041-C-A ***
8868591-C-A 9000550-C-A ***
8877468-C-A 9009427-C-A ***
7270101-C-A 7402060-C-A ***
3467458-G-A 3599417-G-A ***
22118789-G-A 19956903-G-A ***
22080345-TG-T 19918459-TG-T ***
19033223-C-A 16921343-C-A ***
7289752-AAGAG-A 7421711-AAGAG-A 10×AG***
22044662-C-A 19882776-C-A ***
14228261-A-T 12107555-A-T ***
9141034-C-A 9303425-C-A ***
13195349-C-A 11039673-C-A ***
21933556-C-A 19771670-C-A ***
21668589-C-A 19506703-C-A ***
17815895-C-A 15704015-C-A ***
21880797-C-A 19718911-C-A ***
14277928-C-A 12157222-C-A ***
14321734-CT-C 12201028-CT-C ***
17944116-C-CT 15832236-C-CT ***
21796813-A-G 19634927-A-G ***
17604335-C-A 15492455-C-A ***
21725459-G-T 19563573-G-T ***
5576919-C-A 5708878-C-A ***
23332-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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