Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > S756 > Z16328 > FGC32449 > BY154 > FGC17059 > FGC45280 > FGC50014

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
160609
FGC
EPFFZ
16305913-A-T 14194033-A-T YY+
20826047-T-C 18664161-T-C FGC50013 P4_Gap +*
24879274-G-A 22733127-G-A FGC50015 g1 ++
5810732-T-G 5942691-T-G FGC50011 +
18152932-A-C 16041052-A-C FGC50012 Y+
16641854-T-A 14529974-T-A **
16641856-T-A 14529976-T-A **
28782777-C-A 26636630-C-A **
14005812-C-A 11885106-C-A **
15142614-A-T 13030701-A-T **
15641829-C-G 13529949-C-G **
16679846-T-C 14567966-T-C CTS6116 **
16620480-C-A 14508600-C-A **
22311241-G-C 20149355-G-C DYZ19 **
17576073-C-A 15464193-C-A CTS7630 **
28620498-C-T 26474351-C-T **
17486352-A-G 15374472-A-G **
19047333-C-T 16935453-C-T **
20231508-C-CAAGA 18069622-C-CAAGA P5_Dst 21×AAGA**
16066219-T-C 13954339-T-C Y133943 **
4971845-T-C 5103804-T-C **
19050178-C-A 16938298-C-A **
7135423-C-A 7267382-C-A **
4968748-G-A 5100707-G-A Z481 **
16957754-CATAT-C 14845874-CATAT-C 10×AT**
7645448-C-T 7777407-C-T PR1063 **
7582039-G-T 7713998-G-T **
4388629-C-G 4520588-C-G L129 **
8043660-A-G 8175619-A-G **
21620560-T-C 19458674-T-C ***
21620577-C-A 19458691-C-A ***
17619943-A-T 15508063-A-T ***
21140945-C-A 18979059-C-A ***
16726733-A-G 14614853-A-G ***
21620580-T-C 19458694-T-C ***
21620587-C-A 19458701-C-A ***
16711978-C-A 14600098-C-A F2242 ***
21620602-C-A 19458716-C-A ***
21698625-T-A 19536739-T-A ***
17300562-T-A 15188682-T-A ***
21620547-C-A 19458661-C-A ***
21095744-T-A 18933858-T-A ***
19043462-A-G 16931582-A-G ***
19512253-T-C 17400373-T-C ***
19083422-T-C 16971542-T-C ***
19075296-G-A 16963416-G-A Y103555 ***
21149662-C-A 18987776-C-A ***
21324482-T-C 19162596-T-C ***
21524518-A-T 19362632-A-T ***
21620518-T-C 19458632-T-C ***
21620542-C-A 19458656-C-A ***
19019699-C-A 16907819-C-A ***
18953065-G-T 16841185-G-T ***
18619067-G-T 16507187-G-T ***
18602676-G-A 16490796-G-A ***
18585733-C-A 16473853-C-A ***
18520645-A-G 16408765-A-G P6_Dst ***
22508956-G-A 20347070-G-A DYZ19 ***
15605325-A-T 13493445-A-T ***
16641872-C-G 14529992-C-G 12×AT***
13269257-A-G 11113581-A-G ***
13730182-A-T 11574506-A-T ***
13561733-C-A 11406057-C-A ***
13561718-T-G 11406042-T-G ***
13480198-G-C 11324522-G-C ***
13455749-C-T 11300073-C-T ***
13455734-C-G 11300058-C-G ***
13122040-T-C 10611526-T-C ***
13926381-G-A 11805675-G-A ***
10058312-T-G 10220703-T-G ***
9870800-T-C 10033191-T-C ***
9838819-A-G 10001210-A-G ***
9431787-T-C 9594178-T-C ***
9431686-A-T 9594077-A-T ***
8379176-T-C 8511135-T-C ***
8144358-C-A 8276317-C-A ***
13731605-T-A 11575929-T-A ***
14276424-A-T 12155718-A-T ***
15912425-T-C 13800545-T-C ***
14802735-T-G 12690806-T-G ***
15843588-A-G 13731708-A-G ***
15843582-A-T 13731702-A-T ***
15795556-A-G 13683676-A-G ***
21948896-T-C 19787010-T-C ***
15311941-T-A 13200046-T-A ***
15271078-A-T 13159167-A-T ***
15023000-T-A 12911088-T-A ***
14795164-C-T 12683235-C-T ***
14390485-G-C 12269781-G-C ***
14626192-T-C 12514260-T-C ***
14626172-A-G 12514240-A-G ***
14624303-A-G 12512503-A-G ***
14566339-A-G 12454539-A-G ***
14488370-A-G 12367639-A-G ***
14393961-A-G 12273257-A-G ***
14390512-G-T 12269808-G-T ***
21876131-G-T 19714245-G-T ***
23101828-G-T 20939942-G-T ***
21970517-A-G 19808631-A-G ***
6586786-CT-C 6718745-CT-C 22×T***
13456229-CATTGC-TATTCT 11300553-CATTGC-TATTCT ***
13448460-ATT-GTTCTGTC 11292784-ATT-GTTCTGTC ***
13414797-ATT-A 11259121-ATT-A 20×T***
13362360-CAA-C 11206684-CAA-C 19×A***
13347924-ATAA-GT 11192248-ATAA-GT ***
13272689-CAAA-GAAG 11117013-CAAA-GAAG ***
7490211-CC-GG 7622170-CC-GG IR1_L ***
6091720-AT-A 6223679-AT-A 28×T***
13462232-CGG-GGC 11306556-CGG-GGC ***
6059091-TCAA-T 6191050-TCAA-T ***
5273214-CTTTTT-C 5405173-CTTTTT-C 23×T***
4196934-CAA-C 4328893-CAA-C 16×A***
17459483-GGC-G 15347603-GGC-G ***
7275188-T-TAA 7407147-T-TAA 20×A***
58980926-GCAT-CCAG 56834779-GCAT-CCAG 4×CATTC***
28663347-CA-C 26517200-CA-C ***
13462214-GG-CT 11306538-GG-CT ***
13462247-CGAATCGT-GGAAACGC 11306571-CGAATCGT-GGAAACGC ***
21966549-GT-G 19804663-GT-G 16×T***
17459484-GCA-G 15347604-GCA-G ***
58979998-A-ACTC 56833851-A-ACTC ***
58979977-CATTC-TATTG 56833830-CATTC-TATTG ***
58978186-GT-AC 56832039-GT-AC ***
58908790-CTTTC-TTTTA 56682077-GAAAG-TAAAA ***
58844650-CCT-GCA 56746219-AGG-TGC ***
25885794-G-GAAAA 23739647-G-GAAAA P1_Y1 15×GAAA***
22237131-ATGAA-TTGAT 20075245-ATGAA-TTGAT DYZ19 ***
16996654-C-CT 14884774-C-CT 15×T***
13480279-GCTGTG-AATATA 11324603-GCTGTG-AATATA ***
16978116-TA-T 14866236-TA-T ***
16641854-TAT-AAA 14529974-TAT-AAA ***
15799222-T-TCTTTCTTC 13687342-T-TCTTTCTTC ***
13976924-AGACAGAGT-TGACGGAGC 11856218-AGACAGAGT-TGACGGAGC ***
13965268-TCAAA-T 11844562-TCAAA-T ***
13637247-AC-GA 11481571-AC-GA ***
13487704-GTCT-ATCC 11332028-GTCT-ATCC ***
3543166-C-CA 3675125-C-CA 14×A***
58998493-G-A 56852346-G-A ***
21992936-G-C 19831050-G-C ***
23506042-A-G 21344156-A-G ***
25093557-A-G 22947410-A-G g1 ***
24924412-A-G 22778265-A-G g1 ***
24871992-T-C 22725845-T-C P3_b2 ***
24871973-A-G 22725826-A-G P3_b2 ***
24766021-T-A 22619874-T-A P3_b2 ***
24278040-G-T 22131893-G-T P3_b1 ***
23513398-T-A 21351512-T-A ***
23372257-C-A 21210371-C-A ***
26455099-G-A 24308952-G-A P1_Y1 ***
22904298-G-T 20742412-G-T ***
22814988-T-A 20653102-T-A ***
22562316-C-A 20400430-C-A ***
22517749-C-T 20355863-C-T ***
22311292-T-C 20149406-T-C DYZ19 ***
22311291-G-C 20149405-G-C DYZ19 ***
22251386-T-A 20089500-T-A DYZ19 ***
25317028-T-A 23170881-T-A P2_r1 ***
27395701-C-T 25249554-C-T P1_g3 ***
58982903-C-A 56836756-C-A ***
58824942-T-C 56765929-A-G ***
58912970-T-A 56677901-A-T ***
58908790-C-T 56682081-G-A ***
58908782-G-A 56682089-C-T ***
58883476-T-A 56707395-A-T ***
58883448-C-T 56707423-G-A ***
58877029-C-T 56713842-G-A ***
58853548-A-T 56737323-T-A ***
28756873-T-A 26610726-T-A ***
27467887-G-T 25321740-G-T P1_Y2 ***
28517609-T-G 26371462-T-G ***
28234480-G-T 26088333-G-T P1_b4 ***
28205828-A-C 26059681-A-C P1_b4 ***
28114172-T-C 25968025-T-C P1_b4 ***
27713670-T-C 25567523-T-C P1_Y2 ***
27690803-A-G 25544656-A-G P1_Y2 ***
27585966-A-G 25439819-A-G P1_Y2 ***
27484378-C-T 25338231-C-T P1_Y2 ***
8057379-C-A 8189338-C-A ***
6510368-A-G 6642327-A-G ***
7873876-T-C 8005835-T-C ***
25413544-A-T 23267397-A-T P2_r2 ***
27808854-TA-T 25662707-TA-T P1_Y2 10×A***
27773675-CT-C 25627528-CT-C P1_Y2 9×T***
27341013-C-G 25194866-C-G PR7584 P1_g3 ***
27165772-A-G 25019625-A-G P1_g3 ***
25870893-CTGTG-C 23724746-CTGTG-C P1_Y1 10×TG***
25500842-CA-C 23354695-CA-C P2_r2 10×A***
25395436-GACCCATA-G 23249289-GACCCATA-G P2_r2 ***
28133381-TACCTG-T 25987234-TACCTG-T P1_b4 ***
25244168-T-A 23098021-T-A P2_r1 ***
23334036-G-C 21172150-G-C ***
22481308-G-A 20319422-G-A DYZ19 ***
22363718-A-C 20201832-A-C DYZ19 ***
22325032-C-A 20163146-C-A DYZ19 ***
22220627-C-T 20058741-C-T DYZ19 ***
20632575-A-G 18470689-A-G P4_Prx ***
28133380-T-G 25987233-T-G P1_b4 ***
28142885-A-AT 25996738-A-AT P1_b4 11×T***
18427097-AGTGTTAGT-A 16315217-AGTGTTAGT-A P6_Gap ***
58998482-C-T 56852335-C-T ***
13347932-T-C 11192256-T-C 21×AC***
3796333-CTA-C 3928292-CTA-C 9×TA***
5491186-C-T 5623145-C-T F9367 ***
3374847-CAA-C 3506806-CAA-C 23×A***
21854692-C-A 19692806-C-A Y2292 FGC7633 ***
58846579-G-T 56744292-C-A ***
58833312-C-G 56757559-G-C ***
13821163-A-AGAATG 11700457-A-AGAATG ***
58858947-CATTACATTCTACTCTATCTGA-C 56731902-CTCAGATAGAGTAGAATGTAAT-C ***
20951194-A-AT 18789308-A-AT P4_Dst 19×T***
16108701-TC-T 13996821-TC-T P8_Prx ***
18227549-G-GT 16115669-G-GT 14×T***
58848158-C-CCCATT 56742662-C-CAATGG 10×CCATT***
59004632-G-T 56858485-G-T ***
58978769-G-A 56832622-G-A ***
58858969-G-C 56731902-C-G ***
20617502-AGATTCCAG-A 18455616-AGATTCCAG-A P4_Prx ***
18427096-A-T 16315216-A-T P6_Gap ***
24115164-C-CCA 21969017-C-CCA P3_b1 23×CA***
10024552-C-CTG 10186943-C-CTG ***
13662070-G-A 11506394-G-A ***
13662050-G-A 11506374-G-A ***
13660528-A-G 11504852-A-G ***
13452856-T-G 11297180-T-G ***
13451140-A-C,T 11295464-A-C,T ***
13446983-C-T 11291307-C-T ***
13301378-C-A 11145702-C-A ***
10005430-A-C 10167821-A-C ***
13662089-G-A 11506413-G-A ***
9938160-CTG-C 10100551-CTG-C ***
9211352-AACACACACACACACAC-A,T 9373743-AACACACACACACACAC-A,T 22×AC***
6895052-C-A 7027011-C-A ***
26147354-CA-C 24001207-CA-C P1_Y1 10×A***
18639018-AGT-A,T 16527138-AGT-A,T 26×GT***
15811022-G-T 13699142-G-T PR5663 ***
15810991-G-A 13699111-G-A ***
13662083-T-A 11506407-T-A ***
13674665-T-A 11518989-T-A ***
18296640-C-T 16184760-C-T P6_Prx ***
13824822-A-C 11704116-A-C ***
18296635-GCACA-G 16184755-GCACA-G P6_Prx 18×CA***
17919842-T-A 15807962-T-A M10051 PF894 ***
14566720-A-G 12454920-A-G ***
14331142-T-C 12210436-T-C CTS2499 M4787 ***
13868345-G-T 11747639-G-T ***
13859381-CA-C 11738675-CA-C ***
13824865-C-A 11704159-C-A ***
13824810-G-A 11704104-G-A ***
13682102-C-G 11526426-C-G ***
13817982-A-C,T 11697276-A-C,T ***
13815011-T-A 11694305-T-A ***
13802997-G-T 11682291-G-T ***
13802867-A-C 11682161-A-C 7×GAATG***
13728540-TCATGG-GCATGG,T 11572864-TCATGG-GCATGG,T ***
13682112-A-G 11526436-A-G ***
13682107-G-A 11526431-G-A ***
13500208-A-G 11344532-A-G ***
27484483-C-G 25338336-C-G P1_Y2 ***
7723983-C-G 7855942-C-G ***
4031604-A-G 4163563-A-G ***
4582998-G-T 4714957-G-T ***
4582992-A-T 4714951-A-T ***
4522021-T-G 4653980-T-G ***
4513548-T-A 4645507-T-A ***
4489748-G-T 4621707-G-T ***
4379846-C-G 4511805-C-G ***
4334273-T-C 4466232-T-C ***
4031603-C-A 4163562-C-A ***
4640501-T-C 4772460-T-C ***
4031596-G-T 4163555-G-T ***
4031593-G-C 4163552-G-C ***
4031559-G-A 4163518-G-A ***
4000834-A-G 4132793-A-G ***
3959676-A-G 4091635-A-G ***
3846195-T-A 3978154-T-A ***
3838597-T-C 3970556-T-C ***
4603118-T-C 4735077-T-C ***
5088538-G-A 5220497-G-A ***
3780182-A-C 3912141-A-C ***
6172198-T-C 6304157-T-C IR3_Dst ***
7662075-C-T 7794034-C-T ***
7481577-C-T 7613536-C-T IR1_L ***
7456141-C-T 7588100-C-T IR1_L ***
7308313-C-A 7440272-C-A ***
7277011-T-A 7408970-T-A ***
7015361-C-T 7147320-C-T ***
13802950-G-GTGGAC 11682244-G-GTGGAC ***
5820440-A-C 5952399-A-C ***
5095435-T-A 5227394-T-A ***
5582751-A-G 5714710-A-G ***
5526794-C-T 5658753-C-T ***
5451936-C-A 5583895-C-A ***
5346372-G-T 5478331-G-T ***
5199971-A-G 5331930-A-G ***
5116318-A-C 5248277-A-C ***
5110127-T-A 5242086-T-A 12×A***
3796351-A-G 3928310-A-G ***
3737406-C-A 3869365-C-A ***
59030975-G-T 56884828-G-T ***
58974852-ATTC-TTTT 56828705-ATTC-TTTT ***
13462324-GCCCA-ACCCT 11306648-GCCCA-ACCCT ***
13462300-TG-CA 11306624-TG-CA ***
28710359-C-CA 26564212-C-CA 12×A***
58876980-T-C 56713891-A-G ***
21575408-ATT-A 19413522-ATT-A 8×T***
22237184-GAA-CAC 20075298-GAA-CAC DYZ19 ***
13462267-CCTA-ACTT 11306591-CCTA-ACTT ***
58974833-TTCA-ATCC 56828686-TTCA-ATCC ***
4167656-CCA-C 4299615-CCA-C ***
58858865-CCCATTCCATTCCATT-C 56731955-CAATGGAATGGAATGG-C 10×CCATT***
13472031-C-G 11316355-C-G ***
27484446-T-C 25338299-T-C P1_Y2 ***
27484419-A-G 25338272-A-G FGC15690 P1_Y2 ***
21620588-C-T 19458702-C-T Y137006 ***
3543105-T-G 3675064-T-G Z22666 ***
5512875-CA-C 5644834-CA-C 22×A***
13462335-ACACTCC-CAACACA 11306659-ACACTCC-CAACACA ***
4207957-CAA-C 4339916-CAA-C 22×A***
3691405-G-T 3823364-G-T ***
21620523-T-C 19458637-T-C ***
3316668-G-T 3448627-G-T ***
3175933-C-A 3307892-C-A ***
2822742-A-G 2954701-A-G ***
2792400-A-G 2924359-A-G ***
2776403-C-A 2908362-C-A ***
2669711-A-G 2801670-A-G ***
13347887-G-A 11192211-G-A ***
58912982-C-G 56677889-G-C ***
13485616-G-A,T 11329940-G-A,T ***
21620533-T-C 19458647-T-C BY6508 ***
13930171-C-A 11809465-C-A 21×A***
22236828-A-C 20074942-A-C DYZ19 ***
58982220-TTGC-CTGT 56836073-TTGC-CTGT ***
58982195-GCTG-CCTC 56836048-GCTG-CCTC ***
58890276-C-T 56700595-G-A ***
58872496-C-T 56718375-G-A ***
58982881-TACTCCATTAAATTCC-AATTCCGTTCTATTTA 56836734-TACTCCATTAAATTCC-AATTCCGTTCTATTTA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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