Bogle

BigY3: 385777, FTDNA: 385777, BigY2: 385777
MDKA Birth: Scotland

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > ZZ23 > Y12464 > ZZ25 > Z17998 > Y16002 > Z17999 > Z18000 > Z36749 > Z36748 > Y31390 > BY64469

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
385777		FTDNA
385777		BigY2
385777		Manual
Edits
13687234-A-C 11531558-A-C BY23383 DYZ17 A*A*
15520786-C-CA 13408906-C-CA 9×AA*
56829724-T-A A*
56836655-G-A A*
21759687-A-AT 19597801-A-AT 9×T*++
13194547-ATCCAC-A 11038871-ATCCAC-A 4×TCCAC***+
10683767-C-G FT428920 +**
23393456-T-G 21231570-T-G FT84148 YY+**
28809729-G-T 26663582-G-T *
58972517-G-T 56826370-G-T **
7164456-A-C 7296415-A-C CTS1038 PF4645 ****
17802194-A-G 15690314-A-G BY46038 8×AAG**
27791893-T-G 25645746-T-G P1_Y2 **
9172681-T-G 9335072-T-G F192 **
14769437-G-A 12657506-G-A YSC0000259 Z2761 ****
22783159-C-A 20621273-C-A 17×A**
2773757-G-T 2905716-G-T **
3436405-G-T 3568364-G-T FT232764 ****
7084354-T-C 7216313-T-C K517 ****
9960046-G-A 10122437-G-A PF2907 **
14550825-C-A 12439026-C-A **
22954667-C-A 20792781-C-A ****
8296873-C-G 8428832-C-G Z4185 **
4561563-C-A 4693522-C-A **
18812163-C-A 16700283-C-A **
2879166-G-A 3011125-G-A FGC59564FGC59565 **
13858001-A-T 11737295-A-T DYZ17 **
15793048-C-A 13681168-C-A **
9427843-T-C 9590234-T-C **
19340495-C-A 17228615-C-A **
15816390-C-A 13704510-C-A **
4371951-C-A 4503910-C-A **
10813158-C-G **
10813158-CCA-C **
10813184-C-T **
10813196-G-GTAC **
10682784-C-A **
10819043-C-A **
14465312-C-A 12344585-C-A **
10033058-G-A 10195449-G-A **
2699689-A-G 2831648-A-G **
2729875-G-A 2861834-G-A **
2775358-T-C 2907317-T-C **
2803607-C-A 2935566-C-A **
2810801-G-A 2942760-G-A **
2876833-C-A 3008792-C-A **
3131846-G-T 3263805-G-T **
3157934-G-T 3289893-G-T **
3229574-T-C 3361533-T-C **
3250771-C-A 3382730-C-A **
3271707-C-A 3403666-C-A **
3274252-C-A 3406211-C-A **
3343333-G-A 3475292-G-A **
3455795-C-A 3587754-C-A **
3455881-C-A 3587840-C-A **
3501187-A-C 3633146-A-C **
3546087-C-A 3678046-C-A **
3550568-ACAACT-A 3682527-ACAACT-A **
3557710-C-A 3689669-C-A **
3591346-A-T 3723305-A-T **
3602661-C-A 3734620-C-A **
3640407-G-T 3772366-G-T **
3667227-C-A 3799186-C-A **
3804715-A-G 3936674-A-G **
3804774-G-A 3936733-G-A **
3868107-G-T 4000066-G-T **
3889877-C-A 4021836-C-A **
4139010-G-T 4270969-G-T **
4213214-C-A 4345173-C-A **
4241779-C-A 4373738-C-A **
4244619-G-A 4376578-G-A **
4302913-C-A 4434872-C-A **
4321351-G-T 4453310-G-T **
4394312-G-T 4526271-G-T **
4437984-G-A 4569943-G-A **
4442973-G-A 4574932-G-A **
4586017-C-A 4717976-C-A **
4644050-C-A 4776009-C-A **
4833793-C-A 4965752-C-A **
4901632-T-G 5033591-T-G **
4919515-C-A 5051474-C-A **
4970055-G-T 5102014-G-T **
5035607-C-A 5167566-C-A **
5039853-C-A 5171812-C-A **
5126140-C-A 5258099-C-A **
5199653-T-C 5331612-T-C **
5332187-C-A 5464146-C-A **
5332281-AT-A 5464240-AT-A **
5576831-C-A 5708790-C-A **
5598489-C-A 5730448-C-A **
5613597-G-A 5745556-G-A **
5829871-C-A 5961830-C-A **
5864523-A-C 5996482-A-C **
5910733-T-C 6042692-T-C **
5921426-G-A 6053385-G-A **
5924297-C-A 6056256-C-A **
6241230-T-TCTGTCTC 6373189-T-TCTGTCTC IR3_Dst **
6352521-G-T 6484480-G-T **
6352531-G-T 6484490-G-T **
6384577-T-G 6516536-T-G **
6419459-C-CTA 6551418-C-CTA **
6429581-C-A 6561540-C-A **
6490743-C-A 6622702-C-A **
6519552-G-T 6651511-G-T **
6523535-T-C 6655494-T-C **
6633054-C-A 6765013-C-A **
6663331-A-C 6795290-A-C **
6674625-C-A 6806584-C-A **
6732495-G-T 6864454-G-T **
6830802-C-A 6962761-C-A **
6930824-C-A 7062783-C-A **
6930891-G-A 7062850-G-A Y82909 **
6944868-C-A 7076827-C-A **
6977525-C-A 7109484-C-A **
6997988-C-A 7129947-C-A **
6998032-C-A 7129991-C-A **
7001759-C-A 7133718-C-A **
7011584-C-A 7143543-C-A **
7015137-C-A 7147096-C-A **
7017054-A-G 7149013-A-G **
7063894-C-A 7195853-C-A **
7084343-T-C 7216302-T-C **
7084344-A-T 7216303-A-T **
7084361-G-T 7216320-G-T **
7108710-C-A 7240669-C-A **
7108728-C-A 7240687-C-A **
7196450-C-T 7328409-C-T **
7199951-T-C 7331910-T-C **
7200560-G-A 7332519-G-A **
7223024-C-T 7354983-C-T 8×A**
7231148-C-A 7363107-C-A **
7281105-T-C 7413064-T-C **
7281106-G-A 7413065-G-A **
7289493-T-C 7421452-T-C **
7307574-C-A 7439533-C-A **
7332922-C-A 7464881-C-A **
7340935-G-T 7472894-G-T **
7346088-C-A 7478047-C-A **
7347418-A-G 7479377-A-G **
7349113-T-A 7481072-T-A **
7374879-C-A 7506838-C-A FT83401 **
7418470-C-A 7550429-C-A **
7436272-T-C 7568231-T-C **
7451294-CTTTT-C 7583253-CTTTT-C IR1_L 29×T**
7469359-T-A 7601318-T-A IR1_L **
7529612-C-G 7661571-C-G **
7536479-C-A 7668438-C-A **
7536558-G-A 7668517-G-A **
7615206-C-A 7747165-C-A **
7640916-A-G 7772875-A-G **
7656663-C-A 7788622-C-A **
7664237-T-A 7796196-T-A **
7768762-C-A 7900721-C-A **
7854279-C-A 7986238-C-A **
7861194-T-C 7993153-T-C **
7897618-G-T 8029577-G-T **
7990186-G-C 8122145-G-C **
7991403-C-A 8123362-C-A **
8078336-G-C 8210295-G-C **
8109942-C-A 8241901-C-A **
8230288-C-G 8362247-C-G **
8255818-A-T 8387777-A-T **
8661664-T-C 8793623-T-C **
8666191-G-A 8798150-G-A **
8672048-C-T 8804007-C-T FTA38648FTA38648 **
8697367-A-G 8829326-A-G **
8751226-T-C 8883185-T-C **
8760536-TTG-T 8892495-TTG-T **
8911901-G-T 9043860-G-T **
9055636-T-G **
9056471-T-C **
9108276-A-C **
9013239-C-A 9175630-C-A **
9025117-C-T 9187508-C-T **
9048108-T-C 9210499-T-C **
9063787-C-A 9226178-C-A **
9075978-A-G 9238369-A-G **
9088877-G-T 9251268-G-T **
9136706-C-A 9299097-C-A **
9461823-A-G 9624214-A-G **
9513024-T-C 9675415-T-C **
9735635-TC-T 9898026-TC-T IR3_Prx **
9865127-T-C 10027518-T-C **
9885049-C-T 10047440-C-T **
9919859-G-T 10082250-G-T **
9958017-C-A 10120408-C-A **
9965112-C-A 10127503-C-A **
9985945-C-A 10148336-C-A **
9996084-C-A 10158475-C-A **
10004774-C-A 10167165-C-A **
10006187-A-G 10168578-A-G **
10007694-C-A 10170085-C-A **
10020170-C-A 10182561-C-A **
10070367-C-A 10232758-C-A **
10659477-C-G **
10659483-G-A **
10659507-T-C **
10661177-C-G **
10667055-C-A **
10667056-T-G **
10667057-A-T **
10669018-A-T **
10670878-C-A **
10673511-C-A **
10673838-C-A **
10678068-A-T **
10685542-C-A FT429009 **
10686593-TTCCAC-T **
10686608-T-A **
10686610-C-T **
10686623-T-CCCTAC **
10686637-ACTCC-A **
10757019-C-A **
10760581-C-G **
10769330-G-A **
10770645-T-A **
10770657-G-A **
10770692-C-T **
10772427-A-C **
10780324-G-T **
10781300-A-G **
10786388-C-A **
10798351-CA-C **
10798353-T-TG **
10799562-TTCTATTTCATTCCTC-T **
10816596-C-A **
10839604-C-A **
10861286-C-A **
10863200-C-T **
10863236-T-C **
10863242-G-T **
10866065-T-A **
10866074-T-A **
10866094-T-C **
10869196-T-C **
10880369-C-A **
10880427-C-A **
10880546-G-T **
10880638-C-A **
10887976-C-A **
10887995-T-C **
10893214-C-A **
10893377-G-T **
10893602-G-T **
10899992-T-C **
10900155-C-A **
10929611-C-A **
10939052-A-G **
10946063-G-T **
10947277-G-T **
10951319-A-T **
10959285-A-T **
10959294-C-T FT438236 **
10961426-C-T **
10973443-G-T **
10973500-A-G **
10983782-G-C **
10988759-C-A **
10992684-C-A **
11001844-CTG-C **
11009816-T-G **
11018647-A-C **
11018963-A-T **
11018968-A-T **
11018979-A-T **
11037575-A-G **
11038116-A-T **
11038134-C-CT **
13194220-C-A 11038544-C-A **
13196362-C-A 11040686-C-A **
13196650-C-A 11040974-C-A **
13198758-C-A 11043082-C-A **
13257976-C-A 11102300-C-A **
13268891-C-CTT 11113215-C-CTT 11×T**
13275200-G-A 11119524-G-A **
13277318-C-A 11121642-C-A **
13302538-C-A 11146862-C-A **
13350997-C-A 11195321-C-A **
13410451-G-C 11254775-G-C **
13463960-C-A 11308284-C-A **
13483271-G-C 11327595-G-C **
13489003-C-A 11333327-C-A **
13489004-G-C 11333328-G-C **
13568558-C-A 11412882-C-A **
13587708-T-A 11432032-T-A **
13588281-C-A 11432605-C-A **
13593593-C-A 11437917-C-A **
13598833-C-A 11443157-C-A **
11666502-G-A DYZ17 **
11666510-T-A DYZ17 **
13858009-C-A 11737303-C-A DYZ17 **
13858011-G-T 11737305-G-T DYZ17 **
13858012-A-T 11737306-A-T DYZ17 **
13936205-GAAGAAAGAAAGA-G 11815499-GAAGAAAGAAAGA-G 14×AAGA**
13941579-T-A 11820873-T-A **
13945896-T-A 11825190-T-A **
13960849-C-A 11840143-C-A **
13973248-C-A 11852542-C-A **
14000532-C-A 11879826-C-A **
14002138-C-A 11881432-C-A **
14008778-GAAAAA-G 11888072-GAAAAA-G 25×A**
14015466-G-T 11894760-G-T **
14015615-G-T 11894909-G-T **
14023013-C-A 11902307-C-A **
14036081-C-A 11915375-C-A **
14073462-C-A 11952756-C-A **
14076063-G-T 11955357-G-T **
14149237-C-A 12028531-C-A **
14152994-C-A 12032288-C-A **
14177891-G-A 12057185-G-A FT138303 **
14195789-C-A 12075083-C-A **
14218436-C-A 12097730-C-A **
14241204-C-A 12120498-C-A **
14286102-C-A 12165396-C-A **
14315607-TCTTGAACTC-T 12194901-TCTTGAACTC-T **
14354449-GT-G 12233744-GT-G **
14358410-G-A 12237705-G-A 14×A**
14447388-A-G 12326661-A-G **
14462773-T-A 12342046-T-A **
14508726-C-A 12396931-C-A **
14512994-C-A 12401199-C-A **
14538771-C-A 12426972-C-A **
14575813-C-T 12464013-C-T **
14593746-C-A 12481946-C-A **
14802716-C-A 12690787-C-A **
14821752-C-A 12709819-C-A **
14825876-A-G 12713943-A-G **
14828624-C-A 12716691-C-A **
14894095-C-A 12782161-C-A **
14909352-G-T 12797419-G-T **
14934517-C-A 12822582-C-A **
14982038-C-A 12870106-C-A **
15012807-G-T 12900895-G-T **
15012812-T-G 12900900-T-G **
15044309-C-A 12932399-C-A **
15074633-C-A 12962723-C-A **
15092338-C-A 12980427-C-A **
15104893-A-G 12992981-A-G **
15132045-C-G 13020132-C-G **
15168846-C-T 13056932-C-T **
15178548-C-A 13066634-C-A **
15180209-A-T 13068295-A-T **
15260089-C-A 13148173-C-A **
13203564-CTCAAAAAAAAAAAAAAAAAAATTATGTATACGCATATAGTGCAT-C **
15360740-C-A 13248860-C-A FT266888 **
15368668-C-A 13256788-C-A **
15401849-C-A 13289969-C-A **
15500499-C-A 13388619-C-A **
15579477-C-T 13467597-C-T **
15579478-A-G 13467598-A-G **
15579494-C-G 13467614-C-G **
15733878-TC-T 13621998-TC-T **
15735389-C-A 13623509-C-A **
15746337-C-A 13634457-C-A **
15779992-G-A 13668112-G-A **
15824118-CTCTGTCTCCAAAAATATAATAATAATTATAATAAA-C 13712238-CTCTGTCTCCAAAAATATAATAATAATTATAATAAA-C **
15824155-GATAATAATGTTTTTGTATACTAACAAT-G 13712275-GATAATAATGTTTTTGTATACTAACAAT-G **
15848963-TA-T 13737083-TA-T **
15860233-T-TAA 13748353-T-TAA 12×A**
15864078-C-A 13752198-C-A **
15894589-A-T 13782709-A-T **
15916474-C-A 13804594-C-A **
15931592-C-A 13819712-C-A **
16004115-G-T 13892235-G-T **
16006088-C-A 13894208-C-A **
16054732-C-A 13942852-C-A **
16057204-C-A 13945324-C-A **
16070818-C-A 13958938-C-A **
16146489-A-AAGAG 14034609-A-AAGAG P8_Dst **
16220659-A-T 14108779-A-T **
16312347-C-A 14200467-C-A **
16351679-C-A 14239799-C-A **
16357364-G-GTGTGTA 14245484-G-GTGTGTA **
16409068-G-T 14297188-G-T **
16480035-A-C 14368155-A-C **
16486703-C-A 14374823-C-A **
16503796-G-A 14391916-G-A BY108229 **
16532677-G-A 14420797-G-A **
16648161-C-A 14536281-C-A **
16658946-C-A 14547066-C-A **
16681638-C-A 14569758-C-A **
16703759-G-T 14591879-G-T **
16704975-A-G 14593095-A-G **
16757078-A-G 14645198-A-G **
16765554-C-A 14653674-C-A **
16783310-C-A 14671430-C-A **
16783657-T-G 14671777-T-G **
16783674-C-A 14671794-C-A **
16783687-T-C 14671807-T-C **
16783693-T-G 14671813-T-G **
16881855-C-A 14769975-C-A **
16888227-C-A 14776347-C-A **
16926055-C-A 14814175-C-A **
17071382-A-G 14959502-A-G **
17128573-C-A 15016693-C-A **
17136896-A-C 15025016-A-C **
17170237-C-A 15058357-C-A **
17211620-C-A 15099740-C-A **
17217398-C-A 15105518-C-A **
17314654-C-A 15202774-C-A **
17382638-C-A 15270758-C-A **
17434086-T-C 15322206-T-C **
17440961-C-A 15329081-C-A **
17462106-C-A 15350226-C-A **
17480166-T-C 15368286-T-C **
17519741-C-A 15407861-C-A **
17544702-C-A 15432822-C-A **
17629673-T-C 15517793-T-C **
17717035-C-A 15605155-C-A **
17722811-G-T 15610931-G-T **
17728707-G-T 15616827-G-T **
17781567-T-TATTTA 15669687-T-TATTTA **
17849084-T-TGACAG 15737204-T-TGACAG **
17857315-G-T 15745435-G-T **
17860085-G-T 15748205-G-T **
17864785-C-A 15752905-C-A **
17874259-C-A 15762379-C-A **
17897922-C-A 15786042-C-A **
17950763-C-A 15838883-C-A **
18017111-ATATATATATATATATATATATAT-A 15905231-ATATATATATATATATATATATAT-A **
18019229-C-A 15907349-C-A **
18218881-C-A 16107001-C-A **
18336350-G-A 16224470-G-A P6_Prx **
18633598-G-A 16521718-G-A **
18688145-C-A 16576265-C-A **
18710450-C-T 16598570-C-T **
18740840-T-A 16628960-T-A **
18768319-C-A 16656439-C-A **
18795007-C-A 16683127-C-A **
18825581-G-A 16713701-G-A **
18890880-T-G 16779000-T-G **
18913366-A-T 16801486-A-T **
19000641-G-C 16888761-G-C **
19007708-C-A 16895828-C-A **
19022401-C-A 16910521-C-A **
19106907-A-T 16995027-A-T **
19135129-G-A 17023249-G-A **
19204204-C-A 17092324-C-A Y103996 **
19254456-T-A 17142576-T-A **
19310217-C-A 17198337-C-A **
19331777-T-C 17219897-T-C **
19331780-G-A 17219900-G-A **
19337654-TTG-T 17225774-TTG-T **
19407627-A-C 17295747-A-C **
19418523-TTA-T 17306643-TTA-T **
19506855-C-A 17394975-C-A **
19597201-AT-A 17485321-AT-A P5_Prx **
19597206-TTA-T 17485326-TTA-T P5_Prx **
19678527-G-T 17566647-G-T P5_Prx **
19678536-G-T 17566656-G-T P5_Prx **
19829521-C-G 17717641-C-G P5_Prx **
20442919-T-TGCCTACTAGCAGACAGGA 18281033-T-TGCCTACTAGCAGACAGGA P5_Dst **
20640178-G-T 18478292-G-T P4_Prx **
20779664-G-GTGTC 18617778-G-GTGTC P4_Prx **
20832417-C-A 18670531-C-A P4_Gap **
21028772-A-AAGACAG 18866886-A-AAGACAG P4_Dst **
21107546-G-T 18945660-G-T **
21112126-C-A 18950240-C-A **
21134831-C-A 18972945-C-A **
21148577-C-A 18986691-C-A **
21182452-G-A 19020566-G-A **
21200701-C-A 19038815-C-A **
21253906-C-A 19092020-C-A **
21281748-G-A 19119862-G-A **
21308242-C-A 19146356-C-A **
21340179-C-A 19178293-C-A **
21373615-C-A 19211729-C-A **
21412261-C-T 19250375-C-T FT25347 36×T**
21522091-C-A 19360205-C-A **
21651820-C-A 19489934-C-A **
21681796-C-A 19519910-C-A **
21713437-C-A 19551551-C-A **
21771516-C-A 19609630-C-A **
21771708-C-A 19609822-C-A **
21807065-C-A 19645179-C-A **
21834267-C-A 19672381-C-A **
21885770-A-T 19723884-A-T **
21888372-A-G 19726486-A-G **
21935069-C-A 19773183-C-A **
21939719-T-C 19777833-T-C **
21960520-C-A 19798634-C-A **
22103663-TA-T 19941777-TA-T **
22134132-G-T 19972246-G-T **
22167296-A-C 20005410-A-C **
22173690-C-A 20011804-C-A **
22192994-C-A 20031108-C-A **
22202044-C-A 20040158-C-A **
22537697-A-T 20375811-A-T **
22542063-G-T 20380177-G-T **
22587860-A-C 20425974-A-C **
22611344-C-A 20449458-C-A **
22662514-T-A 20500628-T-A **
22730377-C-A 20568491-C-A **
22755997-C-A 20594111-C-A **
22793132-C-A 20631246-C-A **
22809826-C-A 20647940-C-A **
22833817-C-G 20671931-C-G **
22833853-A-G 20671967-A-G **
22833887-T-A 20672001-T-A **
22869016-C-A 20707130-C-A **
22994715-A-G 20832829-A-G **
23035858-A-C 20873972-A-C **
23062736-C-A 20900850-C-A **
23128091-T-A 20966205-T-A **
23255327-C-A 21093441-C-A **
23259307-G-A 21097421-G-A **
23259308-G-GA 21097422-G-GA **
23425533-C-A 21263647-C-A **
23426935-C-A 21265049-C-A **
23773542-G-C 21611656-G-C **
23773549-A-C 21611663-A-C **
23773554-A-G 21611668-A-G **
23773554-AT-A 21611668-AT-A **
23773567-TT-A 21611681-TT-A **
23773575-A-G 21611689-A-G **
23810721-C-A 21648835-C-A **
23848484-G-T 21686598-G-T **
23991920-G-A 21845773-G-A **
24069744-A-G 21923597-A-G P3_b1 **
24342937-T-TCAG 22196790-T-TCAG P3_t1 **
24371798-G-T 22225651-G-T **
24405455-C-A 22259308-C-A **
24422070-C-A 22275923-C-A **
24424257-G-A 22278110-G-A **
24459993-G-C 22313846-G-C **
24523480-G-T 22377333-G-T **
24634204-G-T 22488057-G-T P3_t2 **
24931840-G-A 22785693-G-A g1 **
25333911-G-A 23187764-G-A P2_r1 **
25592877-TC-T 23446730-TC-T P1_gr1 **
25871027-A-G 23724880-A-G P1_Y1 **
25937806-C-A 23791659-C-A P1_Y1 **
25990620-TTG-T 23844473-TTG-T P1_Y1 **
26010268-G-GTATATATATATATATA 23864121-G-GTATATATATATATATA P1_Y1 21×TA**
26106015-C-A 23959868-C-A P1_Y1 **
26152056-CT-C 24005909-CT-C P1_Y1 **
26415676-C-CAA 24269529-C-CAA P1_Y1 20×A**
27570851-G-T 25424704-G-T P1_Y2 **
27617638-T-A 25471491-T-A P1_Y2 **
27617691-T-C 25471544-T-C P1_Y2 **
27647519-C-A 25501372-C-A P1_Y2 **
27733708-C-A 25587561-C-A P1_Y2 **
27791869-T-G 25645722-T-G P1_Y2 **
27966055-A-AACAG 25819908-A-AACAG P1_Y2 **
28361461-T-TCTG 26215314-T-TCTG P1_gr2 **
28468791-C-A 26322644-C-A **
28481210-C-A 26335063-C-A **
28484208-C-A 26338061-C-A **
28484320-C-A 26338173-C-A **
28635926-C-A 26489779-C-A **
28672996-C-A 26526849-C-A **
28708286-C-A 26562139-C-A **
28719845-C-A 26573698-C-A **
28719854-CT-C 26573707-CT-C 10×T**
28767147-C-A 26621000-C-A **
28780016-C-A 26633869-C-A **
56823194-G-T **
56831494-C-T **
56840033-G-T **
56840309-G-T **
56845496-T-G **
56846378-T-A **
56858680-G-T **
13453484-C-A 11297808-C-A **
2950288-A-G 3082247-A-G **
2950297-G-T 3082256-G-T **
2950298-C-G 3082257-C-G **
3266402-T-C 3398361-T-C **
3547944-C-T 3679903-C-T **
3562850-G-T 3694809-G-T **
4017988-C-T 4149947-C-T **
4017994-C-T 4149953-C-T **
4466859-T-A 4598818-T-A **
4949104-A-G 5081063-A-G **
13340410-C-T 11184734-C-T **
13466610-A-C 11310934-A-C **
18891130-G-T 16779250-G-T **
19691786-A-T 17579906-A-T P5_Prx **
21152221-T-C 18990335-T-C **
28564653-A-G 26418506-A-G **
22485486-C-T 20323600-C-T DYZ19 ***
8702810-GTTTT-G 8834769-GTTTT-G 21×T***
6523383-C-T 6655342-C-T PF192 ******
22303851-T-C 20141965-T-C DYZ19 ***
58973100-ATTCCATTCCATTAGT-A,ATTCCATTCCATTCGA 56826953-ATTCCATTCCATTAGT-A,ATTCCATTCCATTCGA ***
4466853-T-C 4598812-T-C FGC38205 ***
14142476-CATT-C 12021770-CATT-C 5×ATT***
14786618-C-T 12674688-C-T F19250 ***
22422138-G-T 20260252-G-T DYZ19 ***
9952390-C-A 10114781-C-A ***
2831983-C-A 2963942-C-A ***
4936897-C-A 5068856-C-A ***
5317486-A-T 5449445-A-T ***
5761157-C-A 5893116-C-A ***
6000790-C-A 6132749-C-A ***
6132394-C-A 6264353-C-A ***
6359613-C-A 6491572-C-A ***
6541089-C-A 6673048-C-A ***
7543498-C-A 7675457-C-A ***
7852666-A-G 7984625-A-G BY157469 ***
8139731-A-G 8271690-A-G ***
8349288-C-A 8481247-C-A ***
8379466-C-A 8511425-C-A ***
8810101-C-A 8942060-C-A ***
8897115-C-A 9029074-C-A ***
8913482-G-T 9045441-G-T ***
9348079-C-T 9510470-C-T ***
9789340-G-GAT 9951731-G-GAT ***
9952395-C-A 10114786-C-A ***
9991303-G-T 10153694-G-T ***
10034224-G-A 10196615-G-A ***
10669545-G-C ***
10688045-C-A,CGG ***
10880316-C-A ***
10909813-C-A ***
10987811-T-A ***
13477728-C-A 11322052-C-A ***
13478098-G-T 11322422-G-T ***
13710943-C-A 11555267-C-A DYZ17 ***
14175981-C-A 12055275-C-A FT116516 ***
14180694-A-G 12059988-A-G ***
14696893-A-T 12584959-A-T ***
14880219-C-A 12768289-C-A ***
15257562-T-C 13145646-T-C ***
15921663-C-A 13809783-C-A ***
16045240-C-A 13933360-C-A ***
16627458-C-G 14515578-C-G ***
16957758-T-C 14845878-T-C FT102195 ***
17375530-C-A 15263650-C-A ***
17502864-G-T 15390984-G-T ***
17859440-C-T 15747560-C-T ***
17944308-A-ACAG 15832428-A-ACAG ***
18712700-C-A 16600820-C-A ***
18895245-C-A 16783365-C-A ***
19259733-C-A 17147853-C-A ***
19378196-C-A 17266316-C-A ***
20707670-C-A 18545784-C-A P4_Prx ***
21139710-C-A 18977824-C-A ***
21244958-C-A 19083072-C-A ***
21477148-C-A 19315262-C-A ***
22103241-A-G 19941355-A-G FT182347 ***
22556686-C-A 20394800-C-A ***
23189415-C-A 21027529-C-A ***
23491149-C-A 21329263-C-A ***
23572587-C-A 21410701-C-A ***
23625824-C-A 21463938-C-A ***
27756185-C-A 25610038-C-A P1_Y2 ***
28485239-A-G 26339092-A-G ***
28598602-C-A 26452455-C-A ***
56707242-T-C ***
56835083-C-CCATTCCACTA ***
8314146-CTT-C,CT 8446105-CTT-C,CT 24×T***
9028893-TA-T,TAA 9191284-TA-T,TAA 18×A***
22028710-C-A 19866824-C-A ***
2950358-A-G 3082317-A-G ***
3112668-A-G 3244627-A-G ***
5007689-CAAAAA-C 5139648-CAAAAA-C 22×A***
8750902-T-A 8882861-T-A ***
9942043-ATTTT-A,ATT 10104434-ATTTT-A,ATT 28×T***
13217467-C-T 11061791-C-T ***
13349484-T-A 11193808-T-A ***
14626242-TTA-T 12514310-TTA-T ***
18951761-A-G 16839881-A-G ***
21814098-T-G 19652212-T-G ***
23397462-T-C 21235576-T-C ***
23414044-T-C 21252158-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual8379144-CTTCT-C8511103-CTTCT-C9 reads total. 7 are positive, 2 look as though they should be aligned elsewhere.
Manual14611351-AG-A12499557-AG-A60 reads show the deletion, one does not.
Manual24108129-C-T21961982-C-T143 reads total - 118C and 25T.
Manual23488835-A-T21326949-A-T7 good reads and 5 are T. To the immediate right is a long A homopolymer. The ends of the reads at the opposite side of the poly A don't look like they belong there.
Manual26722140-A-C24575993-A-C36 reads total - 8 show A, 28 show C.
Manual24947074-C-T22800927-C-T48 reads total. 36C, 11T and one misaligned G.
Manual5188687-C-G5320646-C-GJust one read, a G.
Manual19798357-T-C17686477-T-C16 reads total - 9C, 7T.
Manual22323215-T-A20161329-T-A14 reads - 13 with A, 1 with T. The one with the T comes with a couple extra mutations as well.
Manual7449269-T-C7581228-T-C4A 70C 11G 326T. The A and G reads are misaligned.
Manual18382652-T-A16270772-T-AJust two reads, but both are A.