McGuire

FTDNA: N109246, BigY2: N109246, BigY3: N109246

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > L513/S215/DF1 > S5668 > Z16340 > FGC9807 > FGC9795 > FGC9804 > FGC9809 > Z16334 > FGC9800 > Z16337 > FGC32562

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
N109246		BigY2
N109246		BigY3
N109246
3923867-G-A 4055826-G-A A*
17992855-T-C 15880975-T-C P7_Prx Y***A*A*
13452628-G-A 11296952-G-A A*
4544826-C-CA 4676785-C-CA 13×AA*
22286179-G-T 20124293-G-T DYZ19 A*
4096419-A-AT 4228378-A-AT 10×TA*
56827367-G-C A*
56870986-G-T A*
2791295-A-C 2923254-A-C PR101 **
7188368-C-A 7320327-C-A ****
17859336-C-T 15747456-C-T CTS8171 **
6465467-A-C 6597426-A-C **
19330394-A-T 17218514-A-T CTS10220 Z1344 ****
24046564-G-T 21900417-G-T PR4021 **
16522342-G-C 14410462-G-C **
22432190-A-T 20270304-A-T DYZ19 **
6992552-TC-T 7124511-TC-T **
13870644-G-A 11749938-G-A FGC37974 **
13889472-C-T 11768766-C-T **
22432198-A-G 20270312-A-G DYZ19 **
23062215-C-T 20900329-C-T Z13843 **
26046002-CT-C 23899855-CT-C P1_Y1 13×T**
5393294-GGAAGAA-G 5525253-GGAAGAA-G 10×GAA**
24415718-TTATATA-T 22269571-TTATATA-T 31×TA**
20692958-C-T 18531072-C-T P4_Prx **
6892288-C-A 7024247-C-A **
22432155-G-A 20270269-G-A DYZ19 **
13866184-A-G 11745478-A-G **
58891018-T-C 56699853-A-G **
58891025-C-G 56699846-G-C **
15180212-G-T 13068298-G-T **
20332015-T-A 18170129-T-A P5_Dst **
15927111-C-A 13815231-C-A **
19318178-C-T 17206298-C-T 28×T**
15890344-T-A 13778464-T-A **
10748113-C-A **
7135408-T-G 7267367-T-G **
16989967-A-G 14878087-A-G **
12450522-CTT-C 41×T**
9830601-C-A 9992992-C-A **
11017398-C-A **
11018773-TCTCCA-T **
24456023-T-G 22309876-T-G **
23048342-C-T 20886456-C-T **
59006761-A-T 56860614-A-T **
10949186-G-T **
7664291-C-A 7796250-C-A FT167463 **
16938209-C-A 14826329-C-A **
5215783-C-A 5347742-C-A **
20579347-C-T 18417461-C-T P5_Dst **
10958848-A-C **
9666614-T-A 9829005-T-A IR3_Prx **
10682690-C-A **
10950303-A-T **
10950304-T-C **
11017258-G-C **
11017263-C-T **
23047616-C-A 20885730-C-A **
25932822-T-A 23786675-T-A P1_Y1 **
14387711-C-A 12267007-C-A **
9957970-C-A 10120361-C-A **
17135824-C-A 15023944-C-A **
10975765-C-G **
10975774-T-A **
10975778-T-G **
15380060-G-T 13268180-G-T **
56839862-A-G **
24637405-T-TC 22491258-T-TC P3_t2 **
6626855-C-A 6758814-C-A **
10789062-TTCCAC-T **
14356407-C-CT 12235702-C-CT 10×T**
19415689-C-A 17303809-C-A **
18565030-C-A 16453150-C-A **
19529203-T-C 17417323-T-C **
14529206-C-A 12417407-C-A **
20570242-C-A 18408356-C-A P5_Dst **
10929122-T-A **
10929123-G-T **
10929140-C-A **
10929150-T-C **
10929153-C-CA **
10929161-C-T **
4871853-C-A 5003812-C-A **
14538009-CA-C 12426210-CA-C 9×A**
23434314-C-A 21272428-C-A **
10678615-T-C **
20920782-C-A 18758896-C-A P4_Dst **
17675562-G-A 15563682-G-A **
14352916-C-A 12232211-C-A **
10678596-T-C **
11026065-C-G **
10032868-C-A 10195259-C-A **
15844818-C-A 13732938-C-A **
10754727-T-G **
10958818-C-T **
18858611-GAAA-G 16746731-GAAA-G 14×A**
14566598-C-A 12454798-C-A **
10843958-C-A FT433742 **
10989569-T-A **
21709191-C-T 19547305-C-T **
11001556-C-T **
5966275-C-A 6098234-C-A **
10929178-G-A **
10929181-G-C **
10929198-C-A **
13798673-G-T 11677967-G-T **
10024307-C-A 10186698-C-A **
22263870-G-T 20101984-G-T DYZ19 **
17950825-A-T 15838945-A-T FTB11909 27×AT**
18636703-C-A 16524823-C-A **
10929118-A-C **
10929168-A-T **
10929171-C-CCA **
10929185-T-A **
10929186-C-T **
10929194-C-G **
17440473-C-A 15328593-C-A **
13460971-A-T 11305295-A-T **
13461001-A-G 11305325-A-G **
11036155-C-A **
9996089-C-A 10158480-C-A **
10996092-T-A **
9852758-C-A 10015149-C-A **
18749357-C-A 16637477-C-A **
15070411-C-A 12958502-C-A FT180233 **
5274191-C-CA 5406150-C-CA 9×A**
18042773-C-A 15930893-C-A **
10828731-T-A **
10828759-C-G **
17928949-C-A 15817069-C-A **
10682696-T-C **
3592590-C-A 3724549-C-A **
6491461-C-A 6623420-C-A **
14046756-C-A 11926050-C-A **
19377142-G-A 17265262-G-A **
21379878-C-A 19217992-C-A **
20579309-TAC-T 18417423-TAC-T P5_Dst **
9732895-C-CAA 9895286-C-CAA IR3_Prx 20×A**
7422407-C-A 7554366-C-A **
19330390-A-C 17218510-A-C **
11036172-C-T **
14755770-C-A 12643839-C-A **
4580626-C-A 4712585-C-A **
13253396-GT-G 11097720-GT-G 12×T**
13866182-C-A 11745476-C-A **
18390071-C-A 16278191-C-A P6_Gap **
10939006-C-A **
16040967-A-ATT 13929087-A-ATT 14×T**
10961407-A-T **
21281622-C-A 19119736-C-A **
10796634-T-C FT431600 **
16033534-C-A 13921654-C-A **
19330404-A-G 17218524-A-G **
16829205-C-T 14717325-C-T **
13213245-C-A 11057569-C-A **
11649215-C-A **
5710027-C-A 5841986-C-A **
22880778-C-A 20718892-C-A **
10782703-C-A **
19701525-C-A 17589645-C-A P5_Prx **
17159020-A-G 15047140-A-G **
18006577-C-A 15894697-C-A P7_Gap **
18997143-C-A 16885263-C-A **
17103394-G-T 14991514-G-T **
2729648-CTTTT-C 2861607-CTTTT-C 25×T**
19155529-G-T 17043649-G-T **
15495167-C-CAA 13383287-C-CAA 14×A**
10996071-G-C **
14203430-CAAAA-C 12082724-CAAAA-C 23×A**
11651219-C-A **
17074637-G-GTT 14962757-G-GTT 34×T**
5937301-C-A 6069260-C-A **
13710031-A-G 11554355-A-G **
13234963-C-A 11079287-C-A **
14501779-C-G 12389984-C-G **
14501796-G-A 12390001-G-A FTB6843 **
14531311-C-A 12419512-C-A **
2665521-A-T 2797480-A-T **
2833348-A-AT 2965307-A-AT 9×T**
2977745-C-A 3109704-C-A **
2981493-T-C 3113452-T-C **
2985978-C-A 3117937-C-A **
3091974-G-C 3223933-G-C **
3111642-T-A 3243601-T-A **
3186690-C-A 3318649-C-A **
3275309-G-T 3407268-G-T **
3275475-T-A 3407434-T-A **
3308749-G-T 3440708-G-T **
3344961-G-T 3476920-G-T **
3347642-A-T 3479601-A-T **
3347717-C-A 3479676-C-A **
3385182-T-G 3517141-T-G **
3463747-C-A 3595706-C-A **
3515774-G-T 3647733-G-T **
3515857-G-C 3647816-G-C **
3550574-CAAAAA-C 3682533-CAAAAA-C 24×A**
3560533-A-G 3692492-A-G **
3560545-C-T 3692504-C-T **
3626449-C-A 3758408-C-A **
3650624-G-T 3782583-G-T **
3732001-C-A 3863960-C-A **
3851637-C-A 3983596-C-A **
3851752-C-A 3983711-C-A **
3995201-C-A 4127160-C-A **
4063150-C-A 4195109-C-A **
4144228-T-C 4276187-T-C **
4145348-A-G 4277307-A-G **
4370772-G-T 4502731-G-T **
4372030-C-A 4503989-C-A **
4418341-C-A 4550300-C-A **
4429875-T-C 4561834-T-C **
4429878-T-C 4561837-T-C **
4429891-T-G 4561850-T-G **
4544514-C-A 4676473-C-A **
4659097-C-A 4791056-C-A **
4672308-C-A 4804267-C-A **
4685094-G-C 4817053-G-C **
4702960-C-A 4834919-C-A **
4838016-AAC-A 4969975-AAC-A **
4857978-T-C 4989937-T-C **
5021966-C-A 5153925-C-A **
5078079-G-T 5210038-G-T **
5091041-C-A 5223000-C-A **
5107982-C-A 5239941-C-A **
5126177-G-A 5258136-G-A **
5186527-G-T 5318486-G-T **
5231170-C-A 5363129-C-A **
5246329-T-C 5378288-T-C 16×AC**
5368361-C-T 5500320-C-T **
5658769-G-T 5790728-G-T **
5722965-T-G 5854924-T-G **
5723136-A-C 5855095-A-C **
5723240-C-A 5855199-C-A **
5869493-C-A 6001452-C-A **
5885994-A-T 6017953-A-T **
5980850-C-A 6112809-C-A **
6012928-C-A 6144887-C-A **
6029142-T-C 6161101-T-C FTB32227 **
6039566-C-A 6171525-C-A **
6092334-C-A 6224293-C-A **
6164230-A-T 6296189-A-T IR3_Dst **
6179512-T-A 6311471-T-A IR3_Dst **
6357950-C-T 6489909-C-T **
6523791-A-T 6655750-A-T **
6630595-C-A 6762554-C-A **
6752335-TG-T 6884294-TG-T 8×G**
6756055-C-A 6888014-C-A **
6756429-T-C 6888388-T-C **
6772328-C-A 6904287-C-A **
6776169-C-T 6908128-C-T **
6784585-A-G 6916544-A-G **
6784591-C-A 6916550-C-A **
6791031-C-T 6922990-C-T **
6816723-A-G 6948682-A-G **
6828609-C-A 6960568-C-A **
6830594-C-A 6962553-C-A **
6918580-T-A 7050539-T-A **
6977149-C-A 7109108-C-A **
6978267-G-A 7110226-G-A **
7076335-C-A 7208294-C-A **
7099312-T-G 7231271-T-G **
7111741-G-T 7243700-G-T **
7135409-GA-G 7267368-GA-G **
7135417-G-C 7267376-G-C **
7183781-T-A 7315740-T-A **
7201497-G-A 7333456-G-A **
7208193-C-A 7340152-C-A **
7235157-C-T 7367116-C-T **
7239453-C-A 7371412-C-A **
7282234-G-A 7414193-G-A **
7308200-C-A 7440159-C-A **
7313644-T-C 7445603-T-C **
7322902-T-G 7454861-T-G **
7333047-C-A 7465006-C-A **
7384827-C-A 7516786-C-A **
7656755-G-A 7788714-G-A **
7756294-C-A 7888253-C-A **
8345189-G-A 8477148-G-A **
8679325-A-G 8811284-A-G **
8735325-C-A 8867284-C-A **
8983017-C-T 9145408-C-T **
8988567-C-T 9150958-C-T **
9040411-A-G 9202802-A-G **
9040418-C-A 9202809-C-A **
9040420-G-C 9202811-G-C **
9499200-A-T 9661591-A-T **
9583299-G-T 9745690-G-T IR3_Prx **
9639099-T-TG 9801490-T-TG IR3_Prx **
9639107-T-TCTGTG 9801498-T-TCTGTG IR3_Prx **
9666614-T-TTA 9829005-T-TTA IR3_Prx **
9983110-C-A 10145501-C-A **
9996338-T-C 10158729-T-C **
10032363-C-A 10194754-C-A **
10652777-G-T **
10657471-C-A **
10659250-C-A **
10659518-A-T **
10666949-C-T **
10678020-T-C **
10682682-T-C **
10682701-T-C **
10682707-T-C **
10690779-C-A **
10690829-A-T **
10692129-C-A **
10692383-A-G **
10745028-C-A **
10745158-T-A **
10752676-A-G **
10770447-C-T **
10775837-C-A **
10776278-C-A **
10776297-G-T **
10780882-C-A **
10781343-C-A **
10786230-C-T **
10794460-A-G **
10799582-C-A **
10816582-G-C **
10821621-C-A **
10825229-C-CCTCTG **
10828766-C-G **
10839553-TTTCCATTCCATTCCATTCCATTCCATTCCA-T **
10845713-T-A **
10851886-T-C **
10867849-C-A **
10867909-C-A **
10870284-C-A **
10870842-C-A **
10876222-A-T **
10878409-C-A **
10880867-C-A **
10884749-C-A **
10896359-ATTCCATTCCC-A **
10916023-G-T **
10927344-G-T **
10929089-A-G **
10929174-C-CAAT **
10935660-G-T **
10946866-C-A **
10946892-C-A **
10949218-T-C **
10949232-T-C **
10958801-C-A **
10958811-C-T **
10958827-ATTC-A **
10958832-A-ACAT **
10958853-T-G **
10961397-ACTC-A **
10967935-C-T **
10969259-T-C **
10977003-C-A **
10981046-C-A **
10981877-T-C **
10983065-C-A **
10983894-TAATTC-T **
10983920-CACTGCACTCT-C **
10984001-A-C **
10985287-T-C **
10986969-C-A **
10996022-TCTTTA-T **
10996033-A-C **
10996038-C-T **
10996050-A-T **
10996051-C-G **
10996054-T-C **
10996055-CGATAAG-C **
10996086-C-G **
10996093-G-C **
10997277-C-A **
11001352-C-A **
11001563-C-CCAGTG **
11001574-A-T **
11001591-C-T **
11001596-A-T **
11007904-G-T **
11017256-T-G **
11017343-C-T **
11017351-TTCCATTAAAC-T **
11022367-T-C **
11031773-C-A **
11033069-G-T **
11033107-G-T **
11033303-C-A **
11035544-C-A **
11036149-C-G **
11036159-C-A **
11036206-A-C **
11036212-C-T **
11036214-C-G **
11036215-C-A **
11036222-T-C **
11036242-T-C **
13218583-C-A 11062907-C-A **
13226592-A-G 11070916-A-G **
13298204-C-A 11142528-C-A **
13307228-C-A 11151552-C-A **
13307674-C-A 11151998-C-A **
13323302-C-A 11167626-C-A **
13460989-C-A 11305313-C-A **
13469457-T-C 11313781-T-C **
13570751-C-A 11415075-C-A **
13587616-C-T 11431940-C-T **
13587617-C-T 11431941-C-T **
13587618-A-G 11431942-A-G **
13587624-CT-C 11431948-CT-C **
13593270-C-A 11437594-C-A **
13602251-A-G 11446575-A-G **
13602255-C-A 11446579-C-A **
13637753-C-A 11482077-C-A **
11643554-G-A FT449691 **
11662272-A-G **
11663483-C-A **
13804112-T-C 11683406-T-C **
13821543-C-A 11700837-C-A **
13866154-C-G 11745448-C-G **
13866156-A-C 11745450-A-C **
13866167-ATTAAT-A 11745461-ATTAAT-A **
13878712-T-C 11758006-T-C **
13884230-T-C 11763524-T-C **
13896808-C-A 11776102-C-A **
13927544-C-A 11806838-C-A FT346050 **
13936323-C-A 11815617-C-A **
13937933-T-C 11817227-T-C **
13968750-C-A 11848044-C-A **
13987226-C-A 11866520-C-A **
13993607-C-A 11872901-C-A **
13994883-G-T 11874177-G-T **
14017642-C-A 11896936-C-A **
14041234-C-A 11920528-C-A **
14055617-AC-A 11934911-AC-A **
14080007-G-T 11959301-G-T **
14085921-A-T 11965215-A-T **
14099880-C-G 11979174-C-G **
14118405-C-T 11997699-C-T **
14163713-T-C 12043007-T-C **
14174700-C-A 12053994-C-A **
14179394-A-G 12058688-A-G **
14204433-A-G 12083727-A-G **
14270057-C-A 12149351-C-A **
14284072-C-A 12163366-C-A **
14284178-C-A 12163472-C-A **
14301988-T-A 12181282-T-A **
14427380-C-A 12306655-C-A FT420509 **
14468359-C-A 12347628-C-A **
14468399-A-G 12347668-A-G **
14471770-C-A 12351039-C-A **
14483484-C-A 12362753-C-A **
14485299-C-T 12364568-C-T **
14501768-T-C 12389973-T-C **
14501792-G-A 12389997-G-A **
14505784-A-C 12393989-A-C **
14539556-C-A 12427757-C-A **
14566588-C-A 12454788-C-A **
14567189-C-A 12455389-C-A **
14635154-G-A 12523223-G-A FT70912 **
14649405-C-A 12537470-C-A **
14717933-A-T 12606001-A-T **
14722494-C-A 12610562-C-A **
14722537-C-A 12610605-C-A **
14726379-G-T 12614447-G-T **
14785044-T-C 12673114-T-C **
14960177-C-A 12848252-C-A **
15049377-G-A 12937468-G-A **
15084585-C-A 12972675-C-A FT121879 **
15092592-C-A 12980681-C-A **
15129820-G-T 13017907-G-T **
15142194-C-A 13030281-C-A **
15157735-G-A 13045822-G-A **
15202237-G-T 13090323-G-T **
15210890-T-C 13098976-T-C **
15210893-A-C 13098979-A-C **
15391289-C-A 13279409-C-A **
15394855-C-A 13282975-C-A **
15399374-C-A 13287494-C-A **
15429602-C-A 13317722-C-A **
15442522-C-A 13330642-C-A **
15452315-C-A 13340435-C-A **
15468361-C-T 13356481-C-T FT416045 **
15574850-C-A 13462970-C-A **
15682927-C-A 13571047-C-A **
15698628-C-T 13586748-C-T **
15699896-C-A 13588016-C-A **
15728803-A-G 13616923-A-G **
15803466-A-G 13691586-A-G **
15823982-T-C 13712102-T-C Y51188 **
15890319-T-G 13778439-T-G **
15890341-A-G 13778461-A-G **
15928648-G-A 13816768-G-A **
15962754-T-G 13850874-T-G **
16001644-G-T 13889764-G-T **
16002265-G-A 13890385-G-A **
16022663-G-T 13910783-G-T **
16059747-T-G 13947867-T-G **
16059845-G-T 13947965-G-T **
16060490-C-A 13948610-C-A **
16062314-C-A 13950434-C-A FTA5990 **
16096085-C-A 13984205-C-A **
16102023-GTTTTGTTTT-G 13990143-GTTTTGTTTT-G P8_Prx **
16274146-C-A 14162266-C-A FT346907 **
16467817-G-T 14355937-G-T **
16479924-C-A 14368044-C-A **
16705520-T-C 14593640-T-C **
16705529-C-A 14593649-C-A **
16705531-T-A 14593651-T-A **
16745255-C-A 14633375-C-A **
16941710-C-A 14829830-C-A **
17043007-C-A 14931127-C-A **
17379809-C-A 15267929-C-A **
17402542-C-A 15290662-C-A **
17449276-T-A 15337396-T-A **
17481273-T-C 15369393-T-C **
17502503-G-T 15390623-G-T **
17545496-G-A 15433616-G-A **
17597760-C-A 15485880-C-A **
17639313-G-T 15527433-G-T FTB17771 **
17641050-T-C 15529170-T-C **
17775148-T-G 15663268-T-G **
17812047-C-A 15700167-C-A **
17859741-A-G 15747861-A-G **
18006615-C-A 15894735-C-A P7_Gap **
18071969-C-A 15960089-C-A FTA19603 **
18089296-C-A 15977416-C-A **
18152884-G-A 16041004-G-A **
18191356-T-C 16079476-T-C **
18194247-T-C 16082367-T-C **
18212427-G-C 16100547-G-C **
18544829-A-C 16432949-A-C **
18580266-C-A 16468386-C-A **
18659896-T-C 16548016-T-C **
18687461-C-G 16575581-C-G **
18756264-C-A 16644384-C-A **
18789739-G-A 16677859-G-A **
18859180-C-A 16747300-C-A **
18925488-T-G 16813608-T-G **
18928692-C-A 16816812-C-A **
18974606-C-A 16862726-C-A **
18976384-C-A 16864504-C-A **
19062482-C-A 16950602-C-A **
19067998-T-A 16956118-T-A **
19075090-C-A 16963210-C-A **
19138772-C-A 17026892-C-A **
19246994-C-A 17135114-C-A **
19248307-C-A 17136427-C-A **
19299514-A-G 17187634-A-G **
19330376-G-A 17218496-G-A **
19330400-T-G 17218520-T-G **
19330420-T-C 17218540-T-C **
19330430-G-C 17218550-G-C **
19330435-A-C 17218555-A-C **
19465611-G-A 17353731-G-A **
19537984-C-A 17426104-C-A **
19547631-G-T 17435751-G-T **
19609493-T-A 17497613-T-A P5_Prx **
19753875-C-A 17641995-C-A P5_Prx **
20350302-CT-C 18188416-CT-C P5_Dst **
20470424-T-C 18308538-T-C P5_Dst **
20570275-G-A 18408389-G-A P5_Dst **
20579337-A-G 18417451-A-G P5_Dst **
20603856-G-T 18441970-G-T P5_Dst **
20637682-G-T 18475796-G-T P4_Prx **
21042142-C-A 18880256-C-A **
21042997-C-A 18881111-C-A **
21115825-A-G 18953939-A-G **
21162728-C-A 19000842-C-A **
21162970-A-T 19001084-A-T **
21163135-A-G 19001249-A-G **
21201328-C-A 19039442-C-A **
21418695-G-T 19256809-G-T **
21418788-A-G 19256902-A-G **
21526934-C-A 19365048-C-A **
21543204-A-T 19381318-A-T **
21582296-G-T 19420410-G-T **
21624566-C-A 19462680-C-A **
21708242-G-A 19546356-G-A **
21708247-T-C 19546361-T-C **
21770023-A-G 19608137-A-G **
21795500-G-C 19633614-G-C **
21824781-C-G 19662895-C-G **
21920654-C-A 19758768-C-A **
21991439-G-A 19829553-G-A FGC58182 **
22170233-G-T 20008347-G-T **
22173498-G-T 20011612-G-T **
22432189-T-G 20270303-T-G DYZ19 **
22436810-G-T 20274924-G-T DYZ19 **
22779210-G-T 20617324-G-T **
22857769-C-A 20695883-C-A **
22864422-G-C 20702536-G-C **
22864425-C-T 20702539-C-T **
22880588-G-A 20718702-G-A **
22951166-C-A 20789280-C-A **
23005599-C-A 20843713-C-A **
23007159-C-T 20845273-C-T **
23007160-A-T 20845274-A-T **
23184898-G-T 21023012-G-T **
23185425-G-A 21023539-G-A FT414596 **
23185980-CTTT-C 21024094-CTTT-C 13×T**
23198383-T-G 21036497-T-G **
23206933-C-T 21045047-C-T **
23435826-C-A 21273940-C-A **
23449260-T-C 21287374-T-C **
23516597-A-G 21354711-A-G **
23818450-G-T 21656564-G-T **
23818485-C-G 21656599-C-G **
24071345-C-A 21925198-C-A P3_b1 **
24074201-A-G 21928054-A-G P3_b1 **
25556083-C-T 23409936-C-T P1_gr1 **
26133076-A-G 23986929-A-G P1_Y1 **
26167731-T-TATAC 24021584-T-TATAC P1_Y1 **
26224235-T-A 24078088-T-A P1_Y1 **
26325354-C-A 24179207-C-A P1_Y1 **
26427164-T-C 24281017-T-C P1_Y1 **
27466675-G-A 25320528-G-A P1_Y2 **
27762780-C-CATATATATAT 25616633-C-CATATATATAT P1_Y2 **
27873091-C-A 25726944-C-A P1_Y2 **
27902215-T-A 25756068-T-A P1_Y2 **
28465939-C-A 26319792-C-A **
28483773-A-G 26337626-A-G **
28492879-C-A 26346732-C-A **
28533761-G-C 26387614-G-C **
28589283-T-C 26443136-T-C **
28589301-G-C 26443154-G-C **
28600353-C-A 26454206-C-A **
28612023-TA-T 26465876-TA-T **
28650752-C-A 26504605-C-A **
28655316-T-C 26509169-T-C **
28656822-C-G 26510675-C-G **
28656855-C-A 26510708-C-A **
28659972-C-A 26513825-C-A **
28688954-C-A 26542807-C-A **
28697985-C-A 26551838-C-A **
28700740-T-C 26554593-T-C **
28728386-C-A 26582239-C-A **
28768575-C-A 26622428-C-A **
56828146-C-A **
56838727-G-A **
56838732-A-G **
56875428-A-G **
16097574-T-G 13985694-T-G P8_Prx **
3790921-T-C 3922880-T-C **
3999856-T-TAC 4131815-T-TAC **
19599295-C-A 17487415-C-A P5_Prx **
23484325-T-A 21322439-T-A **
23721615-G-A 21559729-G-A **
18577-C-A **
8466194-A-AAAAT 8598153-A-AAAAT 11×AAAT***
13469755-A-C 11314079-A-C ***
13647474-T-A 11491798-T-A ***
9654405-G-A 9816796-G-A BY30119 IR3_Prx ***
13469730-C-T 11314054-C-T ***
13647495-C-T 11491819-C-T ***
14486432-CTG-C 12365701-CTG-C ***
9371480-A-G 9533871-A-G ***
58979335-TTCCACTCTACTTCTC-T 56833188-TTCCACTCTACTTCTC-T ***
18390083-C-A 16278203-C-A P6_Gap 19×A***
13476120-G-A 11320444-G-A ***
15882074-C-CA 13770194-C-CA 25×A***
7167274-C-A 7299233-C-A Y9593 Z8758 ***
58979428-C-T 56833281-C-T ***
9654352-T-TAGAAAGAA 9816743-T-TAGAAAGAA IR3_Prx 10×AGAA***
16251740-C-A 14139860-C-A ***
8565786-AT-A 8697745-AT-A 10×T***
13450104-CTCCACTCCACCCCATCCCATCCCATTCTATTCCAT-C,CTCCACTCCATTCCATTCCAT 11294428-CTCCACTCCACCCCATCCCATCCCATTCTATTCCAT-C,CTCCACTCCATTCCATTCCAT ******
20105742-TTATCTATCTATCTATC-T,TTATCTATCTATC 17993862-TTATCTATCTATCTATC-T,TTATCTATCTATC P5_Dst 14×TATC***
14867083-G-T 12755153-G-T ***
9654401-A-G 9816792-A-G IR3_Prx ***
14887781-G-GT 12775847-G-GT 9×T***
19172799-G-GTT 17060919-G-GTT 17×T***
13446531-ATTC-A 11290855-ATTC-A ***
13838447-G-A 11717741-G-A ***
15572586-GA-G 13460706-GA-G 9×A***
58976434-C-G 56830287-C-G ***
16327271-ATT-A 14215391-ATT-A 14×T***
10677357-ACTCCT-A,ACTCCACTACT ***
14970258-C-CT 12858333-C-CT 10×T***
10824197-CA-C ***
10824214-C-T ***
10824220-TCA-T ***
56734787-C-T ***
14316186-CTTT-C 12195480-CTTT-C 14×T***
56734788-T-A ***
10841911-C-A ***
10824224-T-TTG ***
10658430-C-T ***
4540459-C-A 4672418-C-A ***
17321158-A-G 15209278-A-G ***
10992285-C-A ***
10992318-T-G ***
14771649-CTTTT-C,CTTT 12659718-CTTTT-C,CTTT 17×T***
10746941-T-TCCGTA ***
9798081-C-T 9960472-C-T ***
10662169-C-A,T ***
11677416-C-A ***
10992286-C-G ***
10992303-T-G ***
16620125-T-C 14508245-T-C ***
4241562-G-T 4373521-G-T ***
5186823-A-G 5318782-A-G ***
6664063-G-T 6796022-G-T ***
6768885-CTTTTT-C,CTTT 6900844-CTTTTT-C,CTTT 17×T***
6903032-C-T 7034991-C-T ***
7141784-TC-T 7273743-TC-T ***
8326498-C-G 8458457-C-G ***
9079298-T-A 9241689-T-A ***
10057454-C-A 10219845-C-A ***
10658428-C-A ***
10658433-C-T ***
10748020-C-G ***
10754782-TTTTAC-T,TTCCTCTTTAC ***
10796747-C-A ***
10896360-T-A ***
10954686-C-A ***
10969837-T-C ***
11022962-A-C,T ***
13236439-TACAC-T,TACACAC 11080763-TACAC-T,TACACAC 11×AC***
13474760-G-C 11319084-G-C ***
14517362-C-A 12405563-C-A ***
15676830-G-T 13564950-G-T ***
16179695-C-A 14067815-C-A ***
16719794-C-A 14607914-C-A ***
17246709-C-A 15134829-C-A ***
17321154-A-G 15209274-A-G ***
18017142-TATATATATATACAC-T 15905262-TATATATATATACAC-T ***
18185236-C-T 16073356-C-T ***
18838757-C-A 16726877-C-A ***
19054352-T-C 16942472-T-C ***
19329468-C-T 17217588-C-T ***
19505351-T-G 17393471-T-G ***
21853412-C-A 19691526-C-A ***
22962187-ATT-A,AT 20800301-ATT-A,AT 14×T***
23097048-T-C 20935162-T-C ***
23205057-A-T 21043171-A-T ***
24660559-G-A 22514412-G-A P3_b2 ***
26526566-G-GTT 24380419-G-GTT P1_Y1 16×T***
56827751-G-C ***
56835525-CCATTA-C ***
13478975-T-C 11323299-T-C ***
56837272-C-T ***
13488450-G-A 11332774-G-A ***
28534940-CTTT-C,CTT 26388793-CTTT-C,CTT 18×T***
13606942-T-A 11451266-T-A ***
13478976-G-T 11323300-G-T ***
13478990-C-G 11323314-C-G ***
3967557-A-T 4099516-A-T ***
8690208-ATTTTT-A,ATT 8822167-ATTTTT-A,ATT 29×T***
14764914-ATT-A,ATTTTT 12652983-ATT-A,ATTTTT 23×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.