Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > S1051 > ~19996272-C-T > FGC14899 > 7004990-C-T

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
MK65060
21744453-A-T A+
3231813-T-G 3363772-T-G A*
13449226-C-T 11293550-C-T A*
56834379-A-ATTCTG A*
13448094-C-G 11292418-C-G A*
56834018-C-A A*
56834293-C-T A*
56831274-C-T A*
56836973-C-G A*
56831255-A-T A*
56831079-C-G A*
56833733-C-A A*
56833525-T-G A*
56834298-C-G A*
13450704-A-T 11295028-A-T A*
10925507-T-C A*
56842512-C-G A*
56832704-C-T A*
56836401-C-A A*
28817884-T-G 26671737-T-G A*
19834702-G-A 17722822-G-A P5_Prx A*
13450559-C-T 11294883-C-T A*
56834081-G-A A*
58979606-A-T 56833459-A-T A*
19669580-G-A 17557700-G-A P5_Prx A*
56831560-C-T A*
56831248-C-T A*
26026685-A-G 23880538-A-G P1_Y1 A*
25882430-A-G 23736283-A-G P1_Y1 A*
22313674-T-C 20151788-T-C DYZ19 A*
22265352-G-T 20103466-G-T DYZ19 A*
19844083-A-G 17732203-A-G P5_Prx A*
19685562-G-A 17573682-G-A P5_Prx A*
19651824-C-T 17539944-C-T P5_Prx A*
56833510-T-C A*
19632805-A-AT 17520925-A-AT P5_Prx 8×TA*
13451284-C-T 11295608-C-T A*
13450920-C-T 11295244-C-T A*
13450543-C-G 11294867-C-G A*
13450382-T-C 11294706-T-C A*
13450019-A-G 11294343-A-G A*
3681955-T-C 3813914-T-C A*
56831948-C-T A*
58980414-C-A 56834267-C-A A*
56836848-C-G A*
58982465-C-A 56836318-C-A A*
58989690-A-G 56843543-A-G A*
58983321-A-G 56837174-A-G A*
13450922-A-T 11295246-A-T A*
5240155-G-A 5372114-G-A A*
59020414-T-G 56874267-T-G A*
59019015-G-C 56872868-G-C A*
3682248-T-A 3814207-T-A A3180 A*
5353158-A-G 5485117-A-G A*
58977400-C-A 56831253-C-A A*
59009217-A-T 56863070-A-T A*
22512855-G-A 20350969-G-A DYZ19 +
23039518-A-G 20877632-A-G FT247124 YY+
13817205-C-A 11696499-C-A BY46526 +
5111539-A-G 5243498-A-G FT245057 12×T+
5033066-T-C 5165025-T-C FT62597 +
23263914-G-A 21102028-G-A FT247162 YY+
3652245-C-G 3784204-C-G FT244748 +
3447135-T-C 3579094-T-C FT27626 +
3279986-G-C 3411945-G-C FT244689 +
3099291-T-C 3231250-T-C FT244658 +
23073499-C-T 20911613-C-T FT247134 YY+
6603811-A-T 6735770-A-T FT245286 +
18097106-C-A 15985226-C-A FT246553 YY+
22460443-C-G 20298557-C-G BY220530 DYZ19 +
14242711-A-C 12122005-A-C FT245894 YY+
8505354-C-A 8637313-C-A FT245615 YY+
22199958-G-T 20038072-G-T FT247041 YY+
8795109-G-A 8927068-G-A FT245676 YY+
20962225-C-G 18800339-C-G P4_Dst +
9523914-T-C 9686305-T-C FT245751 +
16051841-A-T 13939961-A-T FT246215 YY+
10844840-TTCCATTATATTCCAC-T +
13397726-T-C 11242050-T-C +
15925447-T-C 13813567-T-C YY+
11648502-A-G +
23426163-G-A 21264277-G-A FT247196 YY+
18615719-T-G 16503839-T-G FT246615 YY+
19021452-C-A 16909572-C-A FT246677 YY+
19123852-ACCTTT-A 17011972-ACCTTT-A +
17730899-T-A 15619019-T-A Y+
18737523-T-C 16625643-T-C FT246637 YY+
59027545-G-A 56881398-G-A +
18676443-T-C 16564563-T-C FT246629 YY+
5246368-G-A 5378327-G-A FT245083 +
4210605-GC-G 4342564-GC-G *
6608008-G-A 6739967-G-A *
5262500-C-CA 5394459-C-CA *
13262949-C-T 11107273-C-T *
3422377-T-C 3554336-T-C *
4450211-G-C 4582170-G-C *
13842646-CGGAATGGAATGGAAT-C 11721940-CGGAATGGAATGGAAT-C 12×GGAAT*
28808104-T-G 26661957-T-G *
5408510-G-A 5540469-G-A *
3903486-G-A 4035445-G-A *
59018438-T-C 56872291-T-C *
18022155-C-CTA 15910275-C-CTA *
56839214-G-A *
4210811-G-T 4342770-G-T *
4030025-C-A 4161984-C-A *
3720006-G-A 3851965-G-A FT132538 *
3713595-C-A 3845554-C-A *
7307494-T-TAG 7439453-T-TAG 11×AG*
6408303-A-G 6540262-A-G *
10781037-T-TATTCCATTCC *
5631575-C-T 5763534-C-T *
4454972-A-G 4586931-A-G *
4012933-T-A 4144892-T-A *
4154334-AG-A 4286293-AG-A *
4159065-T-C 4291024-T-C FT191592 *
4453585-G-T 4585544-G-T *
4453554-GA-G 4585513-GA-G *
4452776-G-A 4584735-G-A *
4012941-C-A 4144900-C-A *
4379645-T-C 4511604-T-C *
6024536-TTG-T,TTGTGTG 6156495-TTG-T,TTGTGTG 15×TG*
3425715-A-G 3557674-A-G *
4159579-G-A 4291538-G-A *
3701384-T-C 3833343-T-C *
5567334-A-G 5699293-A-G *
3921897-T-C 4053856-T-C *
4450308-G-A 4582267-G-A *
3580280-T-C 3712239-T-C *
3697450-G-T 3829409-G-T *
3697548-A-G 3829507-A-G *
3697862-T-C 3829821-T-C *
5364221-A-C 5496180-A-C *
3705860-T-C 3837819-T-C *
3737701-G-GT 3869660-G-GT *
18901898-A-C 16790018-A-C **
16026195-A-G 13914315-A-G **
18618186-G-A 16506306-G-A **
15150544-A-G 13038631-A-G **
18429212-A-G 16317332-A-G P6_Dst **
16503026-G-T 14391146-G-T **
17847-T-A **
23113686-TG-T 20951800-TG-T **
27699880-TTA-T 25553733-TTA-T P1_Y2 **
20043688-A-T 17931808-A-T P5_Prx **
9909493-T-G 10071884-T-G **
9909489-G-A 10071880-G-A **
8814866-T-C 8946825-T-C **
6133051-C-A 6265010-C-A **
5435769-T-C 5567728-T-C **
13473625-CT-C 11317949-CT-C **
24387249-CTATATATATCCCA-C 22241102-CTATATATATCCCA-C **
26400795-G-T 24254648-G-T P1_Y1 **
27319116-G-A 25172969-G-A P1_g3 **
56853332-G-A ***
5246022-C-T 5377981-C-T ***
28792110-C-T 26645963-C-T ***
24446844-A-ATTC 22300697-A-ATTC ***
23379045-T-A 21217159-T-A ***
24673173-G-GCACA 22527026-G-GCACA P3_b2 16×CA***
3583723-T-C 3715682-T-C ***
4415417-A-G 4547376-A-G ***
3755401-A-ATT 3887360-A-ATT 14×T***
13866589-G-A 11745883-G-A ***
56841273-C-A ***
10669496-CTCCAT-C ***
14178743-A-G 12058037-A-G ***
13347921-T-A 11192245-T-A ***
13459283-TTCCAT-T,TTCCAC 11303607-TTCCAT-T,TTCCAC ***
58987334-G-T 56841187-G-T ***
15557033-C-CAAA 13445153-C-CAAA 18×A***
5151045-C-A 5283004-C-A ***
17128535-CTTT-C,CTT 15016655-CTTT-C,CTT 25×T***
4452922-C-G 4584881-C-G ***
5797108-A-AT 5929067-A-AT 9×T***
4450435-T-C 4582394-T-C ***
17155431-T-C 15043551-T-C ***
3696507-CAAG-C 3828466-CAAG-C ***
3701875-T-C 3833834-T-C ***
3928319-A-G 4060278-A-G ***
4406984-T-C 4538943-T-C FT254185 ***
5262279-T-A 5394238-T-A ***
5344610-T-C 5476569-T-C ***
3952340-TGAGAGA-T 4084299-TGAGAGA-T 20×GA***
6434939-AAAC-A,AAA 6566898-AAAC-A,AAA ***
7076612-CAAAAAAAA-C,CAAAAAA 7208571-CAAAAAAAA-C,CAAAAAA 29×A***
8648172-GATATATATAT-G,GATATATAT 8780131-GATATATATAT-G,GATATATAT 14×AT***
9340745-A-ACACG 9503136-A-ACACG ***
3738186-T-C 3870145-T-C ***
14795331-T-C 12683402-T-C ***
6114314-G-A 6246273-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: MK650601498259393924548304533
Used in age calculations1498259393924548304533
Counts of SNPs1615
Variant counts last updated 2020-06-27 02:46:57.



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