SHOW SNP NAMES

The Big Tree: R-ZZ12

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12

In this block, there are two mutations and both are in the palindromic region. Z39893 is a difficult mutation to test. It does not show up well in BigY or FGC tests and the BAM file will probably need to be examined to confirm if someone is positive or not. As of today, 20160214, I don't know if all the blocks downstream of ZZ12 are positive for it. In particular, I still don't know the status of: A6387, FGC20195, ZZ41, L881, FGC23071, 19241222-T-C, DF79, Z2573 or BY3332. As well, most R-ZZ12* men have unknown status.

2016-11-20: A6387, BY3332 and ZZ41 look to be positive as well.

17624751-T-C
25271613-TTATATATATATATATATATATA-T
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[ N/A ]
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12178338-C-G
13362534-A-C
13750021-T-A
13881769-A-G
14280051-T-C
14537718-C-T
14538492-C-T
16532135-A-G
17116330-A-G
17389556-C-G
18884698-T-C
19166214-C-A
19309819-A-C
19434579-A-C
19449192-T-C
19573392-A-G
19921883-T-C
20061219-C-G
20354913-A-G
20534662-A-C
21121282-CA-C
21256986-G-C
22349549-C-T
22734940-T-A
8282873-C-G
7269925-CTTTATT-C
12834907-A-G
13313900-C-T
14918402-G-C
20350431-C-T
2976913-A-G
6957101-G-A
7683377-G-A
7956508-T-C
8010504-T-C
8466390-C-T
8615165-G-A
8883888-A-G
9326276-G-A
11504368-A-G
11704590-C-T
12178940-C-T
13539728-G-T
14156220-C-T
14891401-A-C
14916583-T-C
15178411-G-A
15271377-A-G
15376009-C-A
15384567-C-T
15511184-A-G
16461938-A-G
16667708-G-T
16996534-C-T
19731959-T-C
20156425-A-C
20311341-T-C
20440783-A-T
21137173-A-C
21374994-A-T
21403354-C-T
21681339-G-A
Pikholz
201169
Spira
394364
Schapiro
76478
Levy
F995L
Bachrach
268974
Reisch
133783
Moquist
552467 552467
Gendelev
230600
Royak
N93232
Persky
431305
Taubman
248611
Esteves
253366
Fernandes
370301
Ferrer
25139
Siciliano
230066
Soares
458968
Simoes
E2198
Melo
329413
Pool
91031
daSilva
B43396 YF09454
Lorenzo
497926
Medmoun
N257483
Vlasnik
B5473 B5473
Henninger
198670
Jorge
585612
Cardoso
444335
Cousido
N227584
Herrera
19783
Martin
50993
Avila
493996
Salvador
426291
Neves
507865
de Gois
562698
Menchaca
420909
Bandola
IN20755
Portillo
329348
Clouse
254224
Garvey
4579
Wilbanks
RUCBU
Wilbanks
321466
Andress
518709 518709
Houston
538924
Baker
526575
Baker
26358
Williams
B146826
Abbott
B14769
Abbott
595081
Biggs
482999
Watkins
271985
1k Genomes
NA12347
Belinho
N112890
Coats
136597
Sousa
559989
1k Genomes
HG01443
1k Genomes
HG01461
Moerker
B3275
Boaz
N34129 N34129
Boze
B207688
Cerros
16661
Nixon
568034
Tarr
239858
unknown
732202
Sánchez
193923
1k Genomes
HG01491
Valadez
628105
Staines
294098
1k Genomes
HG01708
unknown
B49246
Charlap
335739
Kharlap
251432
Diaz
N11798
Gravito
557136
Hemmings
289314
Alligood
204729
Roman
572540
Millet
438977
Marshall
B294548
Burnett
101853
Gomez
B74003
Pacheco
397733
Correia
584889
Martins
N33837
Hays
55051
Marques
589605 589605
Britton
349837
Corvelo
265888
Madeira
160764
Gontijo
Z2111
Lopes
666841
Dinsmore
N88896
Densmore
N107249
Dale
270191
Brock
172803
Say
456027 456027
Say
IN24353
Say
148581 148581
Say
652830 652830
Panizo
N15523
Pugh
261946 261946
Bray
207548 207548
Bell
N134387 N134387
Gray
MI20631 MI20631
Lancaster
113701
Pattinson
278732
Treece
92432 92432
Dries
365148
Lindsey
B211572 B211572
Callister
284255
Steinsbo
235301
Sharp
355581
McKeown
N41015
Kissack
398028
Marshall
686889
1k Genomes
HG01241
Pereira
168216
Damaceno
N206812 N206812
Torres
N112478
Mandeville
273775
Dick
30333
Galey
230275 230275
Smith
287200
Crinklaw
N139161 N139161
Crinklaw
442147
Crinkley
748948
Halsall
271001 271001
Halsell
42127
Sutton
H1295
Howland
26020
Johnson
544985
Johnson
494508
Colvin
492396 492396
Gibson
351631
Gray
110901
Stewart
528774 528774
Stewart
337029
Stewart
B6152
Swenson
B9693 B9693
unknown
808812
Stewart
635158
Stewart
915569
Stewart
284166
Stewart
792504 792504
Stewart
882683
Stewart
506046
Stewart
286049
Stewart
897234
Stewart
229475
Moscia
141935
Yerlitz
IN23790
Baltar
482953
Smith
115560
Whelan
172748
Ryan
B144574 B144574
Ryan
338080
Cannady
207164 207164
Kennedy
418667
Butler
155150 155150
Ryan
325245 325245
Dwyer
N88747
Ryan
B8280 B8280
Ryan
B79146
Ryan
349432
Ryan
B167367
Ryan
817129
Ryan
B513196
Ryan
N41376
Ellis
918080
O'Dwyer
489156
O'Dwyer
743776
Foley
79047 79047
Dwyer
144981
Foley
712364
1k Genomes
HG01879
O'Neil
B511191
Grant
152505
Keogh
B215769 B215769
Cahoo
169776 169776
Egan
26963
O'Dwyer
65918
Carroll
198624 198624
Sexton
828586
Lynch
446571
Kennedy
59497 D8FCK
Kennedy
342178
Condra
50661 50661
Con(d)ry
809481
Unknown
273017
Carew
305367 305367
Cosgrove
B52811
Cosgrove
556125
Cosgrove
331268
Sheehy
B100083 B100083
Kelly
182120
Wilkinson
121153 121153
Ryan
472126 472126
Naughton
145027
Hankins
275327 275327
Hoare
528445
Graham
657524
Martin
871763
Serrano
E15081
Melson
232308
Ross
507070
Brown
583672
Campbell
234361 234361
Thornton
189914 189914
Thornton
B3822 B3822
Thornton
393715 393715
Thornton
288476
Thornton
285253
1k Genomes
HG01615
Parker
308572 308572
Ishkhanyan
322930 322930
Aghayan
343322
Jarret
279620
Blundell
AM21903
Lindsay
400595
McCarthy
424174
Elers
IN39291
Ramirez
10465
Björklund
44772
Mårtensson
IN29131 IN29131
Vieweg
E17000
Jorgensen
286208
Robinson
67405
Hill
324188
Roberts
45940 45940
Tuckey
N123310
Rucker
44097 44097
Rucker
404263 404263
Rucker
144433
Rucker
57954
Rucker
46185
Rucker
49556
Rucker
156363
Rucker
127856
Swann
232152
Swann
B215254
Swann
B335481
Swann
670627
unknown
248669
Swann
645868
Bailie
144416
Critchley
234371
Richardson
B4008
McGill
788418
Clark
294795
Clark
396187
Ponder
133110 133110
Peterson
470820
Hunt
N9279
1k Genomes
NA12812
Davis
800731
Cruttenden
B281673
Clanaboy-ONeill
522487 522487
O'Neill
596116 596116
Williams
349715
O’Neill
746092
ONeill
842849
McReynolds
N50629
O'Neill
N103104 N103104
O'Neil
537966
O'Neill
139142 139142
Buckingham
486325
Mitchell
76619
Payne
55909 55909
O'Neill
N118035 N118035
O'Neill
86442 86442
O'Neill
36315 36315
O'Neill
B82361 B82361
McShane
B69385
O'Neill
291284 291284
O'Neill
B363134
O'Brien
221183
O'Brien
683082
Barry
360576
O'Neale
312665 312665
Mulholland
81152 81152
Mulholland
126058 126058
Stewart
94023 94023
O'Neill
18928
O'Neill
106082
1k Genomes
NA12814
Frappat
E11281
Kidd
N4591 L6CA8
Picart
602820
Gleason
421690
Gleason
101333
Gleason
292050
Walker
98943 98943
Turner
248573
Young
614904
Lentle
472737
Davis
99004
Davis
392437 392437
Davis
526424 526424
Davis
462991
Davis
218403
Bailey
789135
Thomas
N193195
Parker
481086
Kelsall
193567
Rice
4897
Kajnul
405948 405948
Jäkäläniemi
489993
Pätsi
N39375
Koivuranta
B433096
Pätsi
B454525
Bartlett
227828 227828
Hill
415384
Warneken
IN32976 IN32976
Engle
277935 JGJ3G
Carter
416771
Turner
263665
Turner
583122
Turner
862981
Bowker
90959 90959
Harrop
B13669
Dörrenbecher
B104120
Field
IN17793
Zaldivar
149550
Silveira
303289 YF06077
Heningham
B3153 B3153
Kilcrease
65664
unknown
345941
Drinnon
326675
1k Genomes
HG01789
Feitzinger
339787 BAZ9V
Cwiklik
558723 558723
Wright
340326 340326
Wright
226144 226144
Bode
IN48939
Courtney
293467
Farr
B1162
Garibay
N132496
Maldonado
B526380
Miller
15364
Bekirov
544842
Williamson
120428
Scholze
B278775
Salas
457130 457130
Beasley
205694
Gillispie
59598
Hintermeyer
389623
Ruelle
165089
Costa Cachinho
408946
Myklestad
B290711
King
B402690
Jewett
45214 C0YTG
Jewett
269073 JL3W2
Hall
264962
Whiteside
84538
Soard
265020
Whiteside
275500
Bedford
70453
Bedford
K4UVH
Millican
U4Z2N
Greene
686835
Langley
15945
Hancock
249693
Hebert
128757 128757
Hebert
730594
Wight
IN24327
Ramsdale
174024
Moon
182732
Kidd
252954
Morrow
774112 774112
Webb
IN13432 IN13432
Westermark
416295 416295
Andersson
IN13715 IN13715
Dahlberg
IN37948
Nilsson
328628
Panna
N3285
Svensson
630251
Svensson
IN33823
Persson
330933 330933
Hedman
367358 367358
Robertshaw
273347 273347
Robertshaw
376643
Oddy
729562
Smithson
223803 223803
Falkiner
583270
Dickinson
134765 WBAFF
Cockbain
108857
Turner
N3036 GYBGZ
Wilson
92933
Moore
B76932 B76932
O'Connell
271969
White
146399
Campbell
268175 268175
Campbell
444524
Coulman
66969 66969
Dods
93587
Dodd
533969
Dodds
B37367 B37367
Brown
359501
Whan
187534
Shed
B309746
Shed
843229
Sitton
246072
Seton
429667
Seton
476439 476439
Millican
N28259
Drysdale
91628
Robertson
204779 204779
Whyte
185702 185702
Dickson
E14895
1k Genomes
HG00107
McCauley
342681 FASY9
McCauley
242251
McCauley
382774 382774
McCauley
189006 189006
McCauley
421619 6CXZ7
McCauley
848802 848802
McCauley
183723
Mize
250758
McAuley
86047
McAuley
N18197 4DTEX
McAuley
41432 41432
McCauley
115452 115452
McCauley
496137 N9F63
MacAuley
549990
McCawley
B47510 B47510
Good
220228
McCaulley
365749 365749
McCauley
464642
McCaulley
75565
McMath
185183
Dulany
82551
McAfee
309179
Hickey
66501 66501
Hickey
535659 535659
Hickey
107639 107639
Hickey
221844
Higgins
883147
Simpson
B24208
Simpson
436237
Phelps
433304
Saylor
800868
Corner
N3461
Scott
726794
Turrentine
453584
Drennan
B351108
Newton
195076 195076
King
10479 10479
Machado
389511
Serpa
487320
1k Genomes
NA19762
1k Genomes
HG01577
Palmer
370005 370005
Haynes
N129767
Howard
666368
Howard
457852
Howard
363405
Howard
B106232
Howard
473828
Howard
505056
Howard
689260
Howard
689240
Rogers
319215
Norwood
85133
Carter
B208623
Serra
N123269
Aviet
657355
Scholz
E8202
Studebaker
592960
Escobar
313425
Heleno
580362
unknown
IN18152
Unknown
571593 571593
Bourn
190403
Curson
808434
Moger
60897
Joubeaux
E13887
Andersson
487710
Moore
138221
Briggs
873766
unknown
IN49865
Peretti
272633
Gagnon
IN16133
Lindsay
16262
unknown
452863
Robey
375913
Douglas
B331682
Douglass
107453 107453
Montgomery
122627
Douglas
231313
Maertens
N91807
Bar
339624
Bare
391337
Ryder
160165
Wilson
207754
Wilson
B132043
Avitts
440138
Evetts
461811
Skiles
N1879
Horn
854082
1k Genomes
HG01518
Lefebure
481082 481082
St. John
293407
Philpott
354689
1k Genomes
HG01398
Schindler
874495
Clark
110924 110924
Clark
221362
Boryczewski
B93546 B93546
Pereira
732987 732987
Pereira
790538 790538
Vargas
338832
Enos
425286 YF06139
Soares
809894
Santos
311431
Simas
B78337
Pimental
184215
Gómez
N77666 N77666
1k Genomes
HG01170
Lopez
562850
Fialho
43381
Alexandre
520794 YF08383
Alexandre
831014
Bennasar
532031
Bennasar
688234
Ames
798175
1k Genomes
HG01389
1k Genomes
HG01709
1k Genomes
HG01694
Jones
558101
Savron
133001
Oliver
227823 227823
Griffith
300605
Austin
95673
Adkins
308717
1k Genomes
HG01350
Avila
566209
Machado
709101
Bettencourt
636032
Silveira
570365
Melo
709099
Furtado
636052
Young
386154 386154
1k Genomes
HG00731
1k Genomes
HG01048
1k Genomes
HG01176
Ocasio
462297
Rodriguez
551654
Ferreyra
487905
Ferreyra
MK34265
Pinto
164690
Alvarez
651626
1k Genomes
HG00742
Ramos
557364
unknown
585806
Crabb
493840
Steiert
365483 365483
Steiert
529519 529519
Soares Souza
MI28223
Silva
321358
Serna
325077 YF03618
Rios/Serna
262504 YF08895
Pena
314335
Arroyo
N136151
Fernandez
N143286 YF06668
Plunkett
N74404
Plunkett
202807
Perez
B316892 B316892
Gulartie
181696
Jansen
285060
Betote
B73122
unknown
AM29526
da Roza
281393
Brun
481836
Silva
536081
Neves
663776
Leal
196772
Francisco
N34675 N34675
Francisco
363987
Francisco
182832 182832
Francisco
314392
Treece
154593
Sisco
83180
Blackburn
165955
Richmond
326018
Feild
408388
1k Genomes
HG01771
Coley
334918
Cooley
B12855
Roach
202732
Noble
235308
Cambon
500711
Stockman
333436
Barnum
63407 63407
Barnum
118801
Barnum
130968
Barnum
148467
Barnum
286626
Moffett
130439
Cooley
126108
Cooley
319005
Cooley
559256
Chagnon
37299
Lee
391179 391179
Banks
170727
Lees
459723
1k Genomes
HG00739
1k Genomes
NA20770
Pettus
329341
Baker
573890
Hamby
170968
Bennett
B322957
1k Genomes
HG01917
Jago
N227764 N227764
Davis
B56168
1k Genomes
HG01247
Mauldin
634105
Jones
796079
Jonsson
148259
Arger
762734
Zelikovski
379038 379038
Halperin
377846
Perry
108447 108447
Pike
B4953
Garza
434985 434985
Rivas
473524
Escamilla
90409
Falcon
489811
Garza
53663
de la Garza
590261 590261
Campos
569851 569851
Nascimento
N38191 N38191
de Matos
298465
Alves
N124498
Chamberlin
33061 33061
Chamberlin
7133
Roseberry
H1161
Roseberry
N182848 N182848
Rosborough
345114
Dawe
327041
Dawe
669868
Calazar
625837
Pereira
728518
Kalinin
153495
Plant
436455 YF05854
Plant
453216 YF05858
Plant
11830 YF04268
Plant
96105 YF04270
Plant
182593 YF04839
Plantt
235642 YF04841
Plant
230023
Gibson
B9668
Parsons
248229
Olliver
497000
Teague
118858
Westmoreland
589374
Gribben
N81812
1k Genomes
HG01606
Ortiz
N45914
unknown
YF16360 IN17524
Gata
B215431
Strydom
360987
Weitzel
271705
Martin
126873
Gilbert
B216306
Martin
582607
Martin
142650
1k Genomes
HG01121
Hindsley
737762
Sacco
N101674 N101674
Simons
532917
Van Tuyl
222095
Alford
B5857 B5857
Castellanos
N113444
van Eessen
561279 561279
Munson
872800
Desilets
710540
Vinar
MI30061 MI30061
Talbot
349890
1k Genomes
HG01395
1k Genomes
HG01506
Pardo
39078
Uriarte
259851
Lizarraga
N44991
1k Genomes
HG02002
Cabrera
N45289
1k Genomes
HG01182
Barker
343710
Gubbels
266579 266579
Horicks
IN10384
1k Genomes
HG01682
Bestel
N37242
Dauben
214921 214921
Duswalt
234583
Pereira
B118423 B118423
1k Genomes
HG01775
Shuman
170585 170585
Warbururton
IN67223
Mendonca
B64173
Draper
342445
1k Genomes
HG00264
Young
479681
Northover
IN26043
Simony
482364 482364
Gomes
333856
Squire
336150
Nelson
270702
1k Genomes
HG01063
Dolim
396854
Dinge
642564 642564
unknown
B113624
Anderson
B206081 B206081
López-Martin
174606
Arnold
513396
unknown
272038
1k Genomes
HG01085
de Medewe
125381 125381
Hawkins
440147
Grimmett
356645 356645
Grimmett
207233
Grimmett
257213 257213
Grimmett
382557
Grimmitt
406144 406144
Grimmett
IN47337
Grimmett
231966 231966
Grimmett
406529 406529
Grimmett
435467 435467
1k Genomes
HG01341
Cornejo
349527
Cornejo
451932
Cornejo
IN15259
Vierra
106164 YF06079
Marquez
257997
Pinheiro
N127213
Neto
MK39620
Rodrigues
388013
Dias
288304
Gomes
880441
1k Genomes
HG01705
Padilla
519929
Padilla
538431
DeSouza
481005
DeSilva
388672
1k Genomes
HG01413
Mejía
655864
1k Genomes
HG01353
Graber
12728
Armonde
B121275
Morris
277146 HV2Y5
Morris
B15530
Morris
364759
1k Genomes
HG01783
Garcia
342938
Harper
N115011
Harper
17505
Crump
N8921 N8921
Harris
406669 406669
Burns
394089 394089
Byrnes
394088
Burns
305674
O'Beirne
264624 264624
Jude
539100
Phillips
678932
Morris
248088 248088
Moreno
331655
Ormonde
B69645
Rodrigues
578010
Sproat
393079 393079
Sproat
258041 258041
Sproat
754756 754756
Sproat
716598 716598
Sprott
IN36551
Sproat
878289
Pratt
450229 450229
Johnston
MK35708
Welsh
638160
Williams
46619 46619
Williams
395890
Williams
63008
Williams
47395
Williams
128736
Taylor
331371 331371
Taylor
B177481
Sabaté
585978
Vignot
328554
Marmignon
469218 469218
Smith
377825
Silva
129763
Butcher
B38698
Wright
493823 493823
Mohlin
560257
Roy
569313
R1220
ERS3573862
Hall
388659 YF03957
Wix
521178 521178
Ray
529787
Aguiar
636023
Morais de Simas
519252
Coontz
N2197
Murray
812951 812951
Murray
845595
Guedry
390285 390285
Barrow
393401 393401
Azevedo
730199
Silva
14169 771343
Dapena
N224870
Carvajal
N79390
Buck
450792
Buck
651235
Sinton
107229
Sinton
106120
Thom
IN31134
Kaser
N17543
Sullivan
283800
1k Genomes
HG01785
Leppard
42069
Haynes
445554
Marshall
630701 630701
CC
YF11432 500695
Dattwyler
101567
Genest
566655
Alcalde
700731
unknown
B72306
Escobar
12319
Stewart
N139384
Nilsson
MK58161
Rox2

Overlay STR Data for an STR:


Porter
N28007
Oakes
H2290
Williamson
196041
A red background is used for men whose data has not yet been fully analyzed. His position on the tree is not yet final, and will in general be downstream of the current position. He may not be positive for all the SNPs/INDELs in the block he descends from.

Men whose NGS data have been fully analyzed are indicated with a grey background color.

Those men with a grey background and a pink bar to their left have been finalized, but haven't gone through as much scrutinity as earlier kits have. In particular, no search has been made for recurrent SNPs or other unusual mutations. For the vast majority of kits, this has no effect at all, but I will review them as necessary in the future.

Hinxton
HI2
Ancient DNA (aDNA). Coverage is not always the best, so position may only be approximate.

19503820-T-C
FGC5577?
A green SNP name with a '?' indicates that the SNP's status for the block is uncertain, but assumed to be positive. The same SNP probably occurs in an upstream block. It will be necessary to check BAM files or perhaps Sanger sequence some men to prove the result.

CTS4296
22233413-G-A
Mutations written with a red background fall within a region of the Y chromosome, such as the palindromic region, which has left the position of the mutation ambiguous. The true mutation may be at the indicated position, or at any one of a number of alternate positions.

Z18068
SNP names which are bold grey indicates that their exact position on the tree is uncertain. This SNP may belong further upstream or all downstream branches may not be positive for it. This is often the case for SNPs found in FGC kits or 1kG kits in regions not covered by BigY tests.