Big Tree: Person Data

Tree Position

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)	POS-REF-ALT (hg38)	Blocks	Names	Region	McDonald BED	combBED	STR	Kane-BY3 543102
15799175-T-C	13687295-T-C				Y	Y		+
13351008-A-T	11195332-A-T							+
13726489-A-T	11570813-A-T							+
24924132-C-CT	22777985-C-CT			g1			11×T	+
58876451-A-T	56714420-T-A							+
58876479-T-C	56714392-A-G							+
22475774-A-C	20313888-A-C			DYZ19				+
13464951-A-T	11309275-A-T							+
	56756769-T-C							+
13465117-C-G	11309441-C-G							+
13351058-G-A	11195382-G-A							+
24491020-T-A	22344873-T-A							+
13464964-C-A	11309288-C-A							+
13730729-G-C	11575053-G-C							+
8644324-C-CAAA	8776283-C-CAAA						32×A	+
	10604574-A-C							+
	10756744-CAAT-C							+
	10756748-CG-C							+
13351055-T-C	11195379-T-C							+
13464946-G-A	11309270-G-A							+
13468379-G-GTTAATT	11312703-G-GTTAATT							+
15799167-CCT-C	13687287-CCT-C							+
17505050-C-G	15393170-C-G				Y			+
18088987-G-A	15977107-G-A		FTB543		Y			+
21503900-C-T	19342014-C-T		FTB1054		Y	Y		+
22287672-C-T	20125786-C-T			DYZ19				+
23672293-T-TGCCCCCCCCCCCC	21510407-T-TGCCCCCCCCCCCC							+
28369591-G-A	26223444-G-A			P1_gr2				+
28390820-GA-G	26244673-GA-G			P1_gr2			10×A	*
13483437-C-T	11327761-C-T		F18186					*
27861040-GT-G	25714893-GT-G			P1_Y2			17×T	*
24216950-G-GA	22070803-G-GA			P3_b1			9×A	*
59002952-T-C	56856805-T-C							*
2945865-C-A	3077824-C-A							*
5415500-T-C	5547459-T-C		FGC69280					*
5554844-C-T	5686803-C-T							*
5564088-A-G	5696047-A-G							*
5674390-C-T	5806349-C-T							*
9340732-AAC-A	9503123-AAC-A						15×AC	*
13322480-A-T	11166804-A-T							*
13337012-G-A	11181336-G-A							*
9345062-T-G	9507453-T-G				Y			*
3404731-GA-G	3536690-GA-G						11×A	*
13729102-T-A	11573426-T-A							*
13371180-A-G	11215504-A-G							*
13374134-C-T	11218458-C-T							*
13688492-G-A	11532816-G-A							*
13712874-G-C	11557198-G-C							*
58883734-A-T	56707137-T-A							*
9963288-T-A	10125679-T-A				Y			*
6765641-T-G	6897600-T-G				Y	Y		*
28802749-A-G	26656602-A-G							*
13488325-G-A	11332649-G-A		BY86202					*
15558431-GAGATAGATAGATAGAT-G,GAGAT	13446551-GAGATAGATAGATAGAT-G,GAGAT						17×AGAT	*
59006962-TA-T	56860815-TA-T						8×A	*
22437307-T-G	20275421-T-G	FGC23198	A14651	DYZ19				*
22437308-A-T	20275422-A-T	FGC23198	A14652	DYZ19				*
4324851-T-A	4456810-T-A							*
22490628-G-A	20328742-G-A			DYZ19				*
27482837-AT-A	25336690-AT-A			P1_Y2			16×T	*
10022394-T-C	10184785-T-C				Y			*
58883953-G-A	56706918-C-T							*
13688208-A-AATGGC	11532532-A-AATGGC							*
13257268-GATATAT-G	11101592-GATATAT-G						11×AT	*
13489023-GGCC-G	11333347-GGCC-G							*
13485598-G-T	11329922-G-T							*
13489597-C-A	11333921-C-A							*
19513578-ATTTT-A,ATTT	17401698-ATTTT-A,ATTT						20×T	*
13485725-G-A	11330049-G-A							*
13485728-G-T	11330052-G-T							*
13487917-G-T	11332241-G-T		BY86190					*
13485743-A-T	11330067-A-T							*
13485538-A-T	11329862-A-T							*
28706244-GTTT-G	26560097-GTTT-G						13×T	*
16244792-GGTGTGTGT-G,GGTGT	14132912-GGTGTGTGT-G,GGTGT						16×GT	*
	56763547-T-C							*
24427882-G-GTT	22281735-G-GTT						14×T	*
21362542-G-GAA	19200656-G-GAA						13×A	*
23037259-A-T	20875373-A-T				Y	Y		*
13489056-C-T	11333380-C-T							*
18865902-CA-C	16754022-CA-C						8×A	*
58883562-C-G	56707309-G-C							*
5506616-T-C	5638575-T-C		FGC69297					*
3402559-A-T	3534518-A-T							*
5667346-T-G	5799305-T-G							*
2945859-T-C	3077818-T-C							*
28812293-G-A	26666146-G-A							*
13483389-A-G	11327713-A-G							*
	56756959-G-C							*
21167076-G-GAA	19005190-G-GAA						14×A	*
24343525-T-G	22197378-T-G			P3_t1				*
7338358-C-A	7470317-C-A				Y			*
13468289-C-A	11312613-C-A							*
6074688-ATGTGTG-A	6206647-ATGTGTG-A						22×TG	*
3512413-G-A	3644372-G-A							*
5268356-A-G	5400315-A-G							*
58905297-A-T	56685574-T-A							*
23431379-CA-C	21269493-CA-C						8×A	*
15631570-G-T	13519690-G-T				Y			*
13733981-G-T	11578305-G-T							*
13620448-TAA-T	11464772-TAA-T						14×A	*
13477305-C-T	11321629-C-T							*
22065899-GTT-G	19904013-GTT-G						12×T	*
18679925-CAA-C,CAAA	16568045-CAA-C,CAAA						25×A	*
13472514-C-A	11316838-C-A							*
13462140-C-T	11306464-C-T							*
24472421-GT-G,GTTT	22326274-GT-G,GTTT						25×T	*
2758842-CA-C,CAA	2890801-CA-C,CAA						19×A	*
4158596-CTTTT-C	4290555-CTTTT-C						17×T	*
13489105-C-T	11333429-C-T							*
13489067-C-A	11333391-C-A							*
13483407-T-G	11327731-T-G							*
13489685-C-CTT	11334009-C-CTT							*
3394337-CTT-C,CTTT	3526296-CTT-C,CTTT						21×T	*
5665577-T-A	5797536-T-A		FGC69286					*
10022375-G-A	10184766-G-A				Y			*
13374144-T-C	11218468-T-C							*
13374158-C-A	11218482-C-A							*
13688939-T-A	11533263-T-A	FT128116	FT448504					*
13487328-C-T	11331652-C-T							*
10022398-T-C	10184789-T-C				Y			*
9940532-TC-T	10102923-TC-T							*
13347531-T-C	11191855-T-C							*
13476570-C-A	11320894-C-A							*
	56878290-C-A							*
17592345-CTTT-C,CTT	15480465-CTTT-C,CTT						24×T	*
13476602-C-T	11320926-C-T							*
20835454-A-C	18673568-A-C			P4_Gap				*
13470007-G-T	11314331-G-T							*
13489630-CA-C	11333954-CA-C							*
13470035-C-T	11314359-C-T							*
13479233-T-A	11323557-T-A							*
15733879-CAA-C,CA	13621999-CAA-C,CA						25×A	*
13583827-T-A	11428151-T-A							*
13965269-CAA-C,CA	11844563-CAA-C,CA						21×A	*
14493084-C-G	12381281-C-G				Y			*
4402320-G-C	4534279-G-C							*
6885421-A-C	7017380-A-C				Y	Y		*
19604809-CAAAAA-C	17492929-CAAAAA-C			P5_Prx			19×A	*
5486876-CA-C,CAA	5618835-CA-C,CAA						21×A	*
59007432-CT-C,CTT	56861285-CT-C,CTT						18×T	*
9303220-A-C	9465611-A-C				Y			*
13472027-CAT-C	11316351-CAT-C							*
13472033-G-GAA	11316357-G-GAA							*
28813084-G-T	26666937-G-T		BY55623					*
	56876124-CAAAAAAAAAAAAAAAAAAAAAAA-C						50×A	*
13351944-A-T	11196268-A-T							*
13404483-C-T	11248807-C-T							*
13404503-T-A	11248827-T-A							*
13462111-G-C	11306435-G-C							*
13479027-C-T	11323351-C-T							*
13462123-G-C	11306447-G-C		FT443916					*
13462128-A-C	11306452-A-C							*
13462129-G-T	11306453-G-T							*
13465071-G-A	11309395-G-A							*
13472470-C-CCG	11316794-C-CCG							*
13472475-CCT-C	11316799-CCT-C							*
13489566-GC-G	11333890-GC-G							*
13497585-T-C	11341909-T-C							*
13497593-C-G	11341917-C-G							*
13269588-CAAAA-C	11113912-CAAAA-C							*
13275143-T-C	11119467-T-C							*
13476613-G-T	11320937-G-T							*
13469985-G-T	11314309-G-T							*
	56833351-C-CACTGCACTGTACTCCATTCCATTCCATTCT							*
19206934-TTATATA-T	17095054-TTATATA-T						10×TA	*
28799813-GCA-G	26653666-GCA-G							*
28799816-TGCAGTGGAGTGGAGTGGA-T	26653669-TGCAGTGGAGTGGAGTGGA-T							*
13705519-TGGAA-T	11549843-TGGAA-T							*
22220565-G-A	20058679-G-A			DYZ19				*
13461914-G-C	11306238-G-C							*
13583816-G-T	11428140-G-T							*
13470030-G-A	11314354-G-A							*
	11333967-C-							*
	56822441-G-A							*
27633662-T-G	25487515-T-G			P1_Y2				*
3730894-CT-C	3862853-CT-C						8×T	*
9476421-TA-T	9638812-TA-T						9×A	*
22220555-C-A	20058669-C-A			DYZ19				*
8776547-CTTTTT-C,CTTTT	8908506-CTTTTT-C,CTTTT						24×T	*
13483366-C-A	11327690-C-A							*
	11306156-A-							*
13470470-G-A	11314794-G-A							*
13470482-G-C	11314806-G-C							*
13489027-T-A	11333351-T-A							*
7485256-CTT-C,CT	7617215-CTT-C,CT			IR1_L			23×T	*
28818288-A-G	26672141-A-G							*
	10989152-C-CATTCAACTCCACACCATTCCACTCCATTCCTCTCA,CATTCAACTCCACACCATTCCACTCCATTCCTCTCA							*
13699187-C-G	11543511-C-G							*
13692959-G-C	11537283-G-C							*
13348795-CT-C	11193119-CT-C						9×T	*
13470026-A-G	11314350-A-G							*
	56833363-C-CTCCACACCATTCCAT,T							*
3271453-T-G	3403412-T-G							*
	3715009-ACAC-							*
3758500-A-G	3890459-A-G							*
4385368-T-G	4517327-T-G							*
4402321-G-C	4534280-G-C							*
4471225-C-T	4603184-C-T							*
4471229-G-T	4603188-G-T							*
4471259-A-G	4603218-A-G							*
5706360-G-C	5838319-G-C							*
5776576-GA-G,GAA	5908535-GA-G,GAA						13×A	*
5869992-T-TTTTTTTTTTTTG	6001951-T-TTTTTTTTTTTTG							*
6020688-G-GTTTTTTTT	6152647-G-GTTTTTTTT						23×T	*
6105263-C-CTA	6237222-C-CTA							*
6213805-A-G	6345764-A-G			IR3_Dst				*
	8158880-T-							*
8723874-A-C	8855833-A-C				Y	Y		*
8907671-A-G	9039630-A-G							*
9297652-GTCT-G	9460043-GTCT-G							*
9303244-T-A	9465635-T-A				Y			*
9508531-C-CT,CT	9670922-C-CT,CT						25×T	*
9942076-A-T	10104467-A-T				Y			*
10019770-G-A	10182161-G-A				Y			*
10019772-G-A	10182163-G-A				Y			*
10019774-TTC-T	10182165-TTC-T							*
10019778-T-TGC	10182169-T-TGC							*
10019788-C-T	10182179-C-T				Y			*
10022452-C-G	10184843-C-G				Y			*
	10679708-T-TCAGAAGATCTCACTCTGTCAC							*
	10679712-G-GGTTGGAGTGCAGTCGCATAATCTCAGCTCAC							*
	10748004-GCCATTCCATT-G,G							*
	11007796-T-C							*
	11034818-C-T							*
13223265-AGG-A	11067589-AGG-A							*
13239513-CTTT-C	11083837-CTTT-C						17×T	*
13242241-CT-C,CTTTT	11086565-CT-C,CTTTT						21×T	*
13261133-G-A	11105457-G-A							*
13275871-CT-C	11120195-CT-C							*
13398218-C-G	11242542-C-G							*
13411533-G-A	11255857-G-A							*
13449956-C-CCATA	11294280-C-CCATA							*
13449960-T-TTCCATTCCATTGCATTCCACTCCATTCCACTCCACTCCAATCAACTCCACTCCACTCCACTTCACTCCAATCCACTCCAC	11294284-T-TTCCATTCCATTGCATTCCACTCCATTCCACTCCACTCCAATCAACTCCACTCCACTCCACTTCACTCCAATCCACTCCAC							*
	11306154-G-							*
	11306581-C-							*
13463296-C-A	11307620-C-A							*
13464984-G-A	11309308-G-A							*
13465094-C-T	11309418-C-T							*
13468281-TG-T	11312605-TG-T							*
13468288-T-C	11312612-T-C							*
13470048-G-C	11314372-G-C							*
13470428-G-C	11314752-G-C							*
13470429-G-A	11314753-G-A							*
13470437-C-G	11314761-C-G							*
13470464-C-A	11314788-C-A							*
	11316801-T-							*
13472515-C-A	11316839-C-A							*
13472523-T-TC	11316847-T-TC							*
13476877-G-T	11321201-G-T							*
13479003-G-C	11323327-G-C							*
13479017-A-C	11323341-A-C							*
13483313-C-G	11327637-C-G							*
13483393-T-C	11327717-T-C							*
13483435-C-T	11327759-C-T							*
13485745-G-T	11330069-G-T							*
13487304-T-C	11331628-T-C							*
13487325-C-G	11331649-C-G							*
13487930-C-A	11332254-C-A							*
13488772-G-A,T	11333096-G-A,T							*
13488948-G-A	11333272-G-A							*
	11333349-C-							*
	11333963-C-							*
	11333964-C-							*
	11333965-C-							*
	11333968-G-							*
13489736-CTCGCCTCCTCT-C	11334060-CTCGCCTCCTCT-C							*
13489925-C-G	11334249-C-G							*
13688284-C-CTCAAATAAAAGGGACTCAAGCAGAA	11532608-C-CTCAAATAAAAGGGACTCAAGCAGAA							*
	11556892-A-							*
	11567235-T-							*
13733970-T-C	11578294-T-C							*
	11649618-A-AAATGGAATGG,AAATGGAATGGAATGG							*
14200742-TTAGATAGA-T,T	12080036-TTAGATAGA-T,T						15×TAGA	*
14203430-CA-C,CAA	12082724-CA-C,CAA						23×A	*
14331157-GC-G	12210451-GC-G							*
14493083-A-G	12381280-A-G				Y			*
	12736980-T-							*
15566817-GA-G,GAA	13454937-GA-G,GAA						22×A	*
16002201-A-G	13890321-A-G				Y			*
16002652-G-A	13890772-G-A				Y			*
16336897-G-GTTTTTTTTTTTTTT	14225017-G-GTTTTTTTTTTTTTT						23×T	*
	14544779-T-							*
16710246-T-C	14598366-T-C				Y	Y		*
16727341-T-G	14615461-T-G				Y			*
16779007-G-GA,GA	14667127-G-GA,GA						10×A	*
17170490-C-T	15058610-C-T				Y	Y		*
17951299-ATTTTTTT-A,ATTTTTT	15839419-ATTTTTTT-A,ATTTTTT						25×T	*
18874586-A-T	16762706-A-T				Y			*
19398000-A-C	17286120-A-C				Y	Y		*
19753954-ATTT-A	17642074-ATTT-A			P5_Prx			15×T	*
20028012-GTATATATATATA-G	17916132-GTATATATATATA-G			P5_Prx			16×TA	*
20105742-TTATC-T,T	17993862-TTATC-T,T			P5_Dst			14×TATC	*
20835451-A-AC	18673565-A-AC			P4_Gap				*
20835458-T-G	18673572-T-G			P4_Gap				*
21580356-C-T	19418470-C-T				Y			*
21961672-T-C	19799786-T-C				Y	Y		*
21964539-T-C	19802653-T-C				Y			*
21980001-CAAAA-C,CAAA	19818115-CAAAA-C,CAAA						27×A	*
22238326-AACTCACCACTAAGGTCTGCAGCTTCATTCTTGAAGTGAGCAAGACCATGAACCTGCCAGAAGGAAGAAACTCTGAACACATCTGAAGGAACAAACTCTGGACATAACACCTTTAAGTGCTATGAC-A	20076440-AACTCACCACTAAGGTCTGCAGCTTCATTCTTGAAGTGAGCAAGACCATGAACCTGCCAGAAGGAAGAAACTCTGAACACATCTGAAGGAACAAACTCTGGACATAACACCTTTAAGTGCTATGAC-A			DYZ19				*
22288258-A-G	20126372-A-G			DYZ19				*
22448556-T-A	20286670-T-A			DYZ19				*
22463964-A-T	20302078-A-T			DYZ19				*
22509201-G-A	20347315-G-A			DYZ19				*
22509253-C-G	20347367-C-G			DYZ19				*
22512471-C-A	20350585-C-A			DYZ19				*
22914674-CAAAAAA-C,CAAAA	20752788-CAAAAAA-C,CAAAA						27×A	*
23540216-C-T	21378330-C-T				Y	Y		*
23540295-AG-A	21378409-AG-A							*
23759113-TAAAAA-T,TAAA	21597227-TAAAAA-T,TAAA						24×A	*
24107663-CAAA-C	21961516-CAAA-C			P3_b1			18×A	*
24491649-A-T	22345502-A-T							*
26314532-A-C	24168385-A-C			P1_Y1				*
	24179061-G-			P1_Y1				*
	56685560-G-A							*
	56685591-G-C							*
	56706962-TG-T							*
	56706965-AATGG-A							*
	56706989-G-C							*
	56756806-C-G							*
	56756956-A-C							*
	56827544-TTCCTTTCCATTCCATTCCATGCGAG-							*
	56827755-A-							*
	56831904-A-							*
	56834380-T-TTCCATTCAATTCCTC							*
	56850261-G-C							*

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

McClendon

Tree Position

Unique Mutations